NO11G03560.2, NO11G03560.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03560.2
Unique NameNO11G03560.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2087
Alignment locationchr11:1142781..1145359 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1142781..1145359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03560.2 vs.
Match: EWM24834.1 (adp-ribosylation factor 1 [Nannochloropsis gaditana])

HSP 1 Score: 277.7 bits (709), Expect = 2.200e-71
Identity = 140/150 (93.33%), Postives = 145/150 (96.67%), Query Frame = 0 
Query:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVSYKNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFEEAKNELLSLLSEQQLTESAILVFANKADLPTAIPVVQIAQMLQLDR 151
            MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETV+YKNI FTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRF+EAK ELLSLLSE QL+ S ILVFANKADLPTAIPVV+IAQ+LQLDR
Sbjct:    1 MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIPTIGFNVETVNYKNICFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADRDRFDEAKTELLSLLSEHQLSHSTILVFANKADLPTAIPVVEIAQLLQLDR 150
The following BLAST results are available for this feature:
BLAST of NO11G03560.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24834.12.200e-7193.33adp-ribosylation factor 1 [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03560NO11G03560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03560.2NO11G03560.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03560.2.cds1NO11G03560.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03560.2.cds2NO11G03560.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03560.2.cds3NO11G03560.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03560.2 ID=NO11G03560.2|Name=NO11G03560.2|organism=Nannochloropsis oceanica|type=mRNA|length=2087bp
GTTTGCTCGTAGAACAAACCATCCATAGCGGCAGGTGGCTGATGATGCAC
GTGTCAAGGAAACGCAGAGCGAGATCTTGCATCACCAATCATCCAGGGCG
ACCCCATATCCAAGACGCCTTACACTAACCAAGGCGCCTCACTTTAAGAC
ATGTGACAACAGTGGTTATGAGGTGGGGCGAGAGAGAATATATCTAACAA
AACGCGAAGGCTGTGCCTTGCTTCCTCGAACGCTCATATACCCGAGAGGT
CGCTCGATTTTGATTTTCAGCAACTGCTCGCCAGGGCCGGACGCAAGACG
TTGGAGTTGGAAGTTTTCTGTCCGTGTCCCCACTGCATTCCTCGCCCGAC
ACTCCCACGCAGCCCTCTGTACGACAGGCAAAGACAGCGTCCGCGTCAGC
TTTCGAGTCCGACCGCAGCCAGCCGAGGTCCGAAAGACCAGGCAAGGCCG
CGCTCGTTTCGTTGGCTCGCCCCCTCACGACCCCAGTCATATAGTTGCCA
CCGGACTCCACACCCTTACACGTCAACAACACGTCACCAATCCTCTCCAA
CATAACATCCACGTACACAGCACTCAGAGAACACGCGTGACAAGGTCTCG
GAGCGCCCGCAGGAAAAGGCGCATCCCCGCCTTTTTGTCGGGTCGCGCCC
CGCGTCATAATCCTCTCGTCCCCTCCCCCTTCCCTTCACAAGCTCCAGCT
AGCGAGGGCGACCTCCAGCAGCACGCCAAGCCCCTGAGCCCTTCATAGTA
GAGTTAGCGGTATACGTCATCGTCGTCATGGGAGGTTTACTATCGCGCGT
CCTCGACACTCTCTCGGCCCTGGGTGGCAAGCAAGAGAAGCGCATTTTGA
TGCTCGGCCTGGACGCAGCAGGCAAGACAACCATCCTGTACCGTTTGCAG
CTGGGTGAGGACGTGCACTCCATTCCCACCATCGGGTTCAATGTGGAGAC
TGTCAGTTACAAGAATATCTCATTCACCATCTGGGACGTGGGGGGGCAGG
ACCGACTGCGGAAGTTGTGGCGGCACTACTACAAGGACAACGACGCCCTC
ATCTTCGTCATTGACTCGGCCGACCGCGACCGTTTCGAGGAGGCCAAGAA
CGAGCTCCTCTCCCTCCTATCGGAGCAGCAGCTGACCGAAAGCGCCATCC
TAGTCTTCGCGAACAAGGCCGACCTCCCAACCGCCATTCCCGTCGTCCAA
ATCGCCCAAATGCTGCAACTCGACAGGGTACGGTCGTCCGTTTTTTGATT
TCAAGCAGCCGTTGCCCTCAATCCGCTTCGTTCCTTTCCACCCGCACGCC
CTTTTATTGTCTCACACGATGTGAAATGAAGAGCCGCTGCTACCTTCTCC
CCATGCACCGTAGTCAATGCGGTGATGCGACATATCTTGCTTTCCGCCTC
TCACACTTACCACTCTCCCTCCCTGTCCTCCTCCTTCCCTCCCTCCCCCC
CTCCCTCAGGTTGCCAAGGGCCGGCACTGGTACATCCAGCCTTCCTGTGC
CACCACGGGGGACGGGCTCGTGGAGGGCCTCGACTGGCTCTCGTCTAAGC
TCAAGGAACAAGGCCCGCGCCCGCCGAGCTCAGCTTAAGAGAGAGAGAGG
AAGAGGAGGGAGCGAGGGAGGGGTCTGTACATGGAAGGGAGTAGCTGCTG
ATGAATGAGTAGGTCATTCTATGGCTTTCTTTGGTGCTGACGCTCCGACG
AGTGTCAGGAGGACAATGTGGAGAAAGAGGAGGAGGTAGAGGGGTTGTTG
GTGGTAGCAGTAGCGCGGAAGAGGTGAAATAAAGTAAATAAATCAGGGAA
AGGAAGGTAAAGCATACGGGCGACGGTGAAGGGTCAAGAGCAGGAGCGAT
GGGTGTCTTGTACGTAGAAAATCTCCCGGCAGGTCGCGCATGAGAGGAAA
ACCTACAAAAGTATAGGGTAAGATGTCAAGGGGGCAGATGGGAGAGGCTG
AAGGAAGAGAAGGAAGGTACGCCCATAGTAATGATCTTTTCGGTGACTAC
TCGCGTCGTGCAGGCAAGCTGACGGCTACACGTCGCCACAGCTGCAATCA
CGAGAAAGGGATAATTTATCACGCATACTACACTGCA
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protein sequence of NO11G03560.2

>NO11G03560.2-protein ID=NO11G03560.2-protein|Name=NO11G03560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIP
TIGFNVETVSYKNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADR
DRFEEAKNELLSLLSEQQLTESAILVFANKADLPTAIPVVQIAQMLQLDR
VRSSVF*
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mRNA from alignment at chr11:1142781..1145359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03560.2 ID=NO11G03560.2|Name=NO11G03560.2|organism=Nannochloropsis oceanica|type=mRNA|length=2579bp|location=Sequence derived from alignment at chr11:1142781..1145359+ (Nannochloropsis oceanica)
GTTTGCTCGTAGAACAAACCATCCATAGCGGCAGGTGGCTGATGATGCAC
GTGTCAAGGAAACGCAGAGCGAGATCTTGCATCACCAATCATCCAGGGCG
ACCCCATATCCAAGACGCCTTACACTAACCAAGGCGCCTCACTTTAAGAC
ATGTGACAACAGTGGTTATGAGGTGGGGCGAGAGAGAATATATCTAACAA
AACGCGAAGGCTGTGCCTTGCTTCCTCGAACGCTCATATACCCGAGAGGT
CGCTCGATTTTGATTTTCAGCAACTGCTCGCCAGGGCCGGACGCAAGACG
TTGGAGTTGGAAGTTTTCTGTCCGTGTCCCCACTGCATTCCTCGCCCGAC
ACTCCCACGCAGCCCTCTGTACGACAGGCAAAGACAGCGTCCGCGTCAGC
TTTCGAGTCCGACCGCAGCCAGCCGAGGTCCGAAAGACCAGGCAAGGCCG
CGCTCGTTTCGTTGGCTCGCCCCCTCACGACCCCAGTCATATAGTTGCCA
CCGGACTCCACACCCTTACACGTCAACAACACGTCACCAATCCTCTCCAA
CATAACATCCACGTACACAGCACTCAGAGAACACGCGTGACAAGGTCTCG
GAGCGCCCGCAGGAAAAGGCGCATCCCCGCCTTTTTGTCGGGTCGCGCCC
CGCGTCATAATCCTCTCGTCCCCTCCCCCTTCCCTTCACAAGCTCCAGCT
AGCGAGGGCGACCTCCAGCAGCACGCCAAGCCCCTGAGCCCTTCATAGTA
GAGTTAGCGGTATACGTCATCGTCGTCATGGGAGGTTTACTATCGCGCGT
CCTCGACACTCTCTCGGCCCTGGGTGGCAAGCAAGAGAAGCGCATTTTGT
GAGTTTGGACAGGAAAGGGAGGGAGGCAGGCAGGCAGGGAGGGAGGTAGA
GATGATCGAAGGGATGGGTGCGTGGACGGGTGGAATGACAACCATTATGT
GGTGTCTCGCGGGGCGGCTTACTGCAAGGGCGTTTATTGGGGAGGGTTGT
GAGGATGTGCAGAACAGGACAACGGACGTCGGGGGAAGAGAGAGCGTAGC
ACAGCGCACGGCACTGCAGGACTTTCGCTATAAAAGTCTACACTTGGAGC
ATGGCTTTCTCTCACCCACGGGTCACTTATTTCCTCCGCCTCTTCCTCAT
AACTCAACACAGGATGCTCGGCCTGGACGCAGCAGGCAAGACAACCATCC
TGTACCGTTTGCAGCTGGGTGAGGACGTGCACTCCATTCCCACCATCGGG
TTCAATGTGGAGACTGTCAGTTACAAGAATATCTCATTCACCATCTGGGA
CGTGGGGGGGCAGGACCGACTGCGGAAGTTGTGGCGGCACTACTACAAGG
ACAACGACGCCCTCATCTTCGTCATTGACTCGGCCGACCGCGACGTACGT
AATATGACTAGGATTCATTCCTCTTGGTCGCCCTCCTCCTCGCCCCCTCT
TTCTCCTCACTCCATCCTTAGCGTAGCCTTATGTCCCTTCTCCCTTCATT
TTTCTTCGTTTCTATTAATTTTAAAACCGCTTCCCTCCCTCCTCCATTCC
TTCCCTCCTTTCCTCTCCTCAGCGTTTCGAGGAGGCCAAGAACGAGCTCC
TCTCCCTCCTATCGGAGCAGCAGCTGACCGAAAGCGCCATCCTAGTCTTC
GCGAACAAGGCCGACCTCCCAACCGCCATTCCCGTCGTCCAAATCGCCCA
AATGCTGCAACTCGACAGGGTACGGTCGTCCGTTTTTTGATTTCAAGCAG
CCGTTGCCCTCAATCCGCTTCGTTCCTTTCCACCCGCACGCCCTTTTATT
GTCTCACACGATGTGAAATGAAGAGCCGCTGCTACCTTCTCCCCATGCAC
CGTAGTCAATGCGGTGATGCGACATATCTTGCTTTCCGCCTCTCACACTT
ACCACTCTCCCTCCCTGTCCTCCTCCTTCCCTCCCTCCCCCCCTCCCTCA
GGTTGCCAAGGGCCGGCACTGGTACATCCAGCCTTCCTGTGCCACCACGG
GGGACGGGCTCGTGGAGGGCCTCGACTGGCTCTCGTCTAAGCTCAAGGAA
CAAGGCCCGCGCCCGCCGAGCTCAGCTTAAGAGAGAGAGAGGAAGAGGAG
GGAGCGAGGGAGGGGTCTGTACATGGAAGGGAGTAGCTGCTGATGAATGA
GTAGGTCATTCTATGGCTTTCTTTGGTGCTGACGCTCCGACGAGTGTCAG
GAGGACAATGTGGAGAAAGAGGAGGAGGTAGAGGGGTTGTTGGTGGTAGC
AGTAGCGCGGAAGAGGTGAAATAAAGTAAATAAATCAGGGAAAGGAAGGT
AAAGCATACGGGCGACGGTGAAGGGTCAAGAGCAGGAGCGATGGGTGTCT
TGTACGTAGAAAATCTCCCGGCAGGTCGCGCATGAGAGGAAAACCTACAA
AAGTATAGGGTAAGATGTCAAGGGGGCAGATGGGAGAGGCTGAAGGAAGA
GAAGGAAGGTACGCCCATAGTAATGATCTTTTCGGTGACTACTCGCGTCG
TGCAGGCAAGCTGACGGCTACACGTCGCCACAGCTGCAATCACGAGAAAG
GGATAATTTATCACGCATACTACACTGCA
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Coding sequence (CDS) from alignment at chr11:1142781..1145359+

>NO11G03560.2 ID=NO11G03560.2|Name=NO11G03560.2|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at chr11:1142781..1145359+ (Nannochloropsis oceanica)
ATGGGAGGTTTACTATCGCGCGTCCTCGACACTCTCTCGGCCCTGGGTGG
CAAGCAAGAGAAGCGCATTTTGATGCTCGGCCTGGACGCAGCAGGCAAGA
CAACCATCCTGTACCGTTTGCAGCTGGGTGAGGACGTGCACTCCATTCCC
ACCATCGGGTTCAATGTGGAGACTGTCAGTTACAAGAATATCTCATTCAC
CATCTGGGACGTGGGGGGGCAGGACCGACTGCGGAAGTTGTGGCGGCACT
ACTACAAGGACAACGACGCCCTCATCTTCGTCATTGACTCGGCCGACCGC
GACCGTTTCGAGGAGGCCAAGAACGAGCTCCTCTCCCTCCTATCGGAGCA
GCAGCTGACCGAAAGCGCCATCCTAGTCTTCGCGAACAAGGCCGACCTCC
CAACCGCCATTCCCGTCGTCCAAATCGCCCAAATGCTGCAACTCGACAGG
GTACGGTCGTCCGTTTTTTGA
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Synonyms
Publications