NO11G03490.1, NO11G03490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03490.1
Unique NameNO11G03490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2140
Alignment locationchr11:1122342..1125630 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1122342..1125630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G03490.1 vs.
Match: EWM29163.1 (ubiquitin conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 306.2 bits (783), Expect = 1.000e-79
Identity = 137/147 (93.20%), Postives = 144/147 (97.96%), Query Frame = 0 
Query:  131 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRGRHDATAREWTAKYAM 278
            MALKR+NKELQD+ RDPPANCSAGPVGDDLFHWQATIMGP+DSPY+G V++LNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALT+SKVLLSICSLLTDPNPDDPLVPEIAQLYRTDR RHDATAREWTAKYAM
Sbjct:    1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
The following BLAST results are available for this feature:
BLAST of NO11G03490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29163.11.000e-7993.20ubiquitin conjugating enzyme [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03490NO11G03490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03490.1NO11G03490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03490.1.cds1NO11G03490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03490.1.cds2NO11G03490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03490.1.cds3NO11G03490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03490.1.cds4NO11G03490.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03490.1.cds5NO11G03490.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03490.1.cds6NO11G03490.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03490.1 ID=NO11G03490.1|Name=NO11G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp
AGTCATCACATGGGCCTCCGGACAAAGTTAATTTCGAGTTCTCTGGCCCT
CAGGGAGGGTCAAGGAAAAGAGTCCTTCGCCCCCCCTTTCCCTAATGACG
GTGATGGTCTGATCTCTACGTCATGCCACTGTTCACCCCTTCGACCACCA
CTTAGTCCTCGTACGAACGGTTTCCCATCGGCATCCACCACCGGGGACGT
GCTAAGTGTTTGGCTGGCCGGGTGGCGTCGCTGGGGTTCTAGAGCGAGCG
AAGGGCCAACAACCGCCACCAGCAAACATCATCAATTCTCGCCTTGGCTC
CACACCCACCCACTCACTCACCCACCCGACCTACGCCCGTCCCAACCCCA
CCGTACATATGCACAGAAAGGTCACAGCAACCATTCAACTGACAACAGCA
TGGCGCTCAAGCGGATCAACAAGGAATTGCAGGACCTGGGACGAGATCCG
CCTGCAAACTGCTCGGCAGGCCCTGTGGGCGACGACCTTTTTCACTGGCA
AGCCACCATCATGGGTCCTGATGACTCGCCTTACAGCGGCGCCGTCTTCT
TCCTCAACATTCATTTCCCTGCCGACTACCCCTTTAAGCCCCCCAAGGTG
AACTTCACGACGCGTATTTACCACTGCAACATTAACGCGAACGGCGGCAT
CTGCCTGGACATCCTGAAGGACCAGTGGAGCCCTGCCCTGACAGTCTCCA
AGGTCCTACTCTCCATCTGCTCCCTCCTGACTGACCCCAACCCAGACGAT
CCCCTGGTGCCCGAGATCGCACAGCTGTACCGCACGGACCGGGGAAGGCA
CGACGCCACCGCACGCGAGTGGACCGCCAAGTATGCGATGTAGTCGGAGC
TTGGTCTCCTCCTCCCTGATGGACCCCCCCCCCCGAGCAGCACCAACAAG
TACGAAAATAATCACAAGAAGAAGAGGAAGGTGAAGAATTGAATTAAGGA
AGGAAGGAAAGGAAGGGAGATAGAATGGGAGGAAGGGAGGGAGGGAGAGA
GGGAGGAAGGGGCTTGCCCTTCTAATAAGTGTACATATCATCGTCCATAG
CGTCAGTCTCAGTGAGCAGTCTGTCATGTGGGCCACACATAGAGACAGGC
GCCCAACACGCACTCACGAGAGAGAGAACAGAGAGGGTGCGAGGAGGAGA
GAGAGAGGGTGGGGCTTGGGGAGAAGAGGGAAGGCGGGAATGAAAGGGAC
GAGGCAAGACGAAGCAGCCCATACGTCGTGTACGTCCTCGGTGCATTGAG
GATTGTGGAAGATATCGGGAGGAGTGAGAAGAAGGAGAAAGAAAAAGAGA
GAGGAAACAATGAGGAATGTGGAAGGAGTAGGGAAAAGTGAGAGGAGAAG
AAGAGAGAAAAAGAGAGAGGAAGAGAGAGGAAGGGGGTAAGGACAGGAGT
ATTGTCGGTTTTGATTCAGAGTAGTTTTGAGAGGCAGCATGTCAGTGCTC
TTTCTCTTCTTCTCCTAGTTTAATCGCTATTCCTCTTCCTTGTCCTCTTT
CTGCCTATTTCCTGCGTATCCGTCCTCGTCTCTTTTGCCGGCCTTTATCT
TTGTCTTGTGAGCACTCTGGACGTGGACGTACGGATGGTGGTGATTGGTC
TTGTGAGGATGAGGGCGGTGCAGATGGTGGTGGTTGTGGTGATGATGGTG
GTGGTAAGAAGAAATCACAAAAGAAGCAACGGACGGGCCTTGAAAACATT
AAAAATCGCTGCGACTACAACCAACGCTCTTCCTCCTCCCTCTCCCTATA
CCTATCTCCCTCCCCTGTCGACCTGGAACTATCTCCCTTCCCTGTCGACC
TACGCTGTTCCGCGACCCCGGCATTGGTGCCAGGTGAATAAATGTTTACA
CACTCATCACGAGCCTCGCCTTCTCGAGAGCGTCGTGTCTAACGAAGAAA
ACCCAAAAACACACGAACACAAACACACAACACGCACAGCGTGGGGATGC
CGTGCCATTCAATAGTTCTTCCACCGACAGGCATGGACAGGGGCAGGCAG
GCGAGGCTGCTACATTTTAAGAATGAGTTGCTTCTCTTATAATCACACGA
ATGCCTGGATTATATCATTCTTTCGTCCCTGCATGGCTTGCCCCTTTATC
AGCTATACACGTCCTATTCCCTTCACCTCGGCCCATTTCC
back to top

protein sequence of NO11G03490.1

>NO11G03490.1-protein ID=NO11G03490.1-protein|Name=NO11G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MGLRTKLISSSLALREGQGKESFAPPFPNDGDGLISTSCHCSPLRPPLSP
RTNGFPSASTTGDVLSVWLAGWRRWGSRASEGPTTATSKHHQFSPWLHTH
PLTHPPDLRPSQPHRTYAQKGHSNHSTDNSMALKRINKELQDLGRDPPAN
CSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFT
TRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPLV
PEIAQLYRTDRGRHDATAREWTAKYAM*
back to top

mRNA from alignment at chr11:1122342..1125630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03490.1 ID=NO11G03490.1|Name=NO11G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=3289bp|location=Sequence derived from alignment at chr11:1122342..1125630+ (Nannochloropsis oceanica)
AGTCATCACATGGGCCTCCGGACAAAGTTAATTTCGAGTTCTCTGGCCCT
CAGGGAGGGTCAAGGAAAAGAGTCCTTCGCCCCCCCTTTCCCTAATGACG
GTGATGGTCTGATCTCTACGTCATGCCACTGTTCACCCCTTCGACCACCA
CTTAGTCCTCGTACGAACGGTTTCCCATCGGCATCCACCACCGGGGACGT
GCTAAGTGTTTGGCTGGCCGGGTGGCGTCGCTGGGGTTCTAGAGCGAGCG
AAGGGCCAACAACCGCCACCAGCAAACATCATCAATTCTCGCCTTGGCTC
CACACCCACCCACTCACTCACCCACCCGACCTACGCCCGTCCCAACCCCA
CCGTACATATGCACAGAAAGGTCACAGCAACCATTCAACTGACAACAGCA
TGGCGCTCAAGCGGATCAACAAGGAATTGCAGGACCTGGGTGCGTCCGGG
AGGGAGGGCGGAAGGGAACGAACAAGAAGCTGGAAGGGGAGAGAGGAGAT
GGCTTCTTTGGAGGTGTACTTCGTCTGGAATGACACCAGCTACAGACCCA
CAGGGCTATATGATTTCAAGCAATTGTACATTTCTGTCGCACGCAACCCT
GGCTCCCGTTGTGTCCACTCACCGCTCTTTTTTCCCCCTGTCCCTTCTTC
CCCCTCTTCTTCTGTCTTCCTCTCCCCTTCCTTTTCGTTGTAGGACGAGA
TCCGCCTGCAAACTGCTCGGCAGGCCCTGTGGGCGACGACCTTTTTCACT
GGCAAGCCACCATCATGGGTCCTGGTACGTGCTTGTCCGGTGGCTGCTTC
TCCCGTCTTCCTTAGAATTAACCTGGCCTTTGTTTTCTTCGCTGGGCCAA
CGTATCCCCACCCTTTCATCTCTCATCTCCTCCCTACTCTATGCAGATGA
CTCGCCTTACAGCGGCGCCGTCTTCTTCCTCAACATTCATTTCCCTGCCG
ACTACCCCTTTAAGCCCCCCAAGGTACGTGGGCTAGGTCGGGAGATACGA
CGGTTTGTCGGGGGGTTTCAAAACAGCCAGCTCTGAAGCCTGAGTGTGCC
TCGGCACCCACACACTCTGTCCCCGCCCCCTCTGCCACAGGTGAACTTCA
CGACGCGTATTTACCACTGCAACATTAACGCGAACGGCGGCATCTGCCTG
GACATCCTGAAGGACCAGTGGAGCCCTGCCCTGACAGTCTCCAAGGTATT
TATGTTGCCCCCACCTACCCATCCATCTCCGTATCTACCCACCCATCCAC
CTACCTACCTATCTACCCCTTTATCTATCCATTGTATCTAGCCACATAAA
TACGTATCTATCTACTTATCTACCTACCTATCTACCTACCTACAAACCTA
ATCTATATCCATGTATCTAGCTACCTGAATACTTATCTATATATATACGG
AGGCCCATCTCTCCCTCCCTGCATGTCCCGCCTCCGTATTTTCCTTCATT
TCAGCCTACGCATATATCCCAAACGCCGCAATTTAGAAAATGACATCATC
AAATTGGCACACGCATACCCTCCCTCACCCCTCCCTCCGTCCCTCCCTCC
GTCCTTCCCTCCCTCGCCGTTTTTCAGGTCCTACTCTCCATCTGCTCCCT
CCTGACTGACCCCAACCCAGACGATCCCCTGGTGCCCGAGATCGCACAGC
TGTACCGCACGGACCGGGGAAGGCACGACGCCACCGCACGCGAGTGGACC
GCCAAGTACGTGCCGTCGAGAGGGGGTCAGGGAGGGAGGAAGGGAGGGGG
GAAGGGAGGGAGGGAGGGAGGGGGGAAGGGAGGGAGGATGCAAATGATGA
TGGGTGGGTGTGGGGGTGGTTGGTGTGTGTATGTGTGTGTCTAAAAGAGA
GGGGTGGATTGGGATAACCAGTTCAAGACAAAAGGTTTGAAAGCCCAGGA
CGACTTGACCCGCCCTTTCCGTCTGTCCTGCCTCCCTCACCTCACCTCTC
TCCCTGCCCTCCTCGCTTTCTTATGACAGGTATGCGATGTAGTCGGAGCT
TGGTCTCCTCCTCCCTGATGGACCCCCCCCCCCGAGCAGCACCAACAAGT
ACGAAAATAATCACAAGAAGAAGAGGAAGGTGAAGAATTGAATTAAGGAA
GGAAGGAAAGGAAGGGAGATAGAATGGGAGGAAGGGAGGGAGGGAGAGAG
GGAGGAAGGGGCTTGCCCTTCTAATAAGTGTACATATCATCGTCCATAGC
GTCAGTCTCAGTGAGCAGTCTGTCATGTGGGCCACACATAGAGACAGGCG
CCCAACACGCACTCACGAGAGAGAGAACAGAGAGGGTGCGAGGAGGAGAG
AGAGAGGGTGGGGCTTGGGGAGAAGAGGGAAGGCGGGAATGAAAGGGACG
AGGCAAGACGAAGCAGCCCATACGTCGTGTACGTCCTCGGTGCATTGAGG
ATTGTGGAAGATATCGGGAGGAGTGAGAAGAAGGAGAAAGAAAAAGAGAG
AGGAAACAATGAGGAATGTGGAAGGAGTAGGGAAAAGTGAGAGGAGAAGA
AGAGAGAAAAAGAGAGAGGAAGAGAGAGGAAGGGGGTAAGGACAGGAGTA
TTGTCGGTTTTGATTCAGAGTAGTTTTGAGAGGCAGCATGTCAGTGCTCT
TTCTCTTCTTCTCCTAGTTTAATCGCTATTCCTCTTCCTTGTCCTCTTTC
TGCCTATTTCCTGCGTATCCGTCCTCGTCTCTTTTGCCGGCCTTTATCTT
TGTCTTGTGAGCACTCTGGACGTGGACGTACGGATGGTGGTGATTGGTCT
TGTGAGGATGAGGGCGGTGCAGATGGTGGTGGTTGTGGTGATGATGGTGG
TGGTAAGAAGAAATCACAAAAGAAGCAACGGACGGGCCTTGAAAACATTA
AAAATCGCTGCGACTACAACCAACGCTCTTCCTCCTCCCTCTCCCTATAC
CTATCTCCCTCCCCTGTCGACCTGGAACTATCTCCCTTCCCTGTCGACCT
ACGCTGTTCCGCGACCCCGGCATTGGTGCCAGGTGAATAAATGTTTACAC
ACTCATCACGAGCCTCGCCTTCTCGAGAGCGTCGTGTCTAACGAAGAAAA
CCCAAAAACACACGAACACAAACACACAACACGCACAGCGTGGGGATGCC
GTGCCATTCAATAGTTCTTCCACCGACAGGCATGGACAGGGGCAGGCAGG
CGAGGCTGCTACATTTTAAGAATGAGTTGCTTCTCTTATAATCACACGAA
TGCCTGGATTATATCATTCTTTCGTCCCTGCATGGCTTGCCCCTTTATCA
GCTATACACGTCCTATTCCCTTCACCTCGGCCCATTTCC
back to top

Coding sequence (CDS) from alignment at chr11:1122342..1125630+

>NO11G03490.1 ID=NO11G03490.1|Name=NO11G03490.1|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at chr11:1122342..1125630+ (Nannochloropsis oceanica)
ATGGGCCTCCGGACAAAGTTAATTTCGAGTTCTCTGGCCCTCAGGGAGGG
TCAAGGAAAAGAGTCCTTCGCCCCCCCTTTCCCTAATGACGGTGATGGTC
TGATCTCTACGTCATGCCACTGTTCACCCCTTCGACCACCACTTAGTCCT
CGTACGAACGGTTTCCCATCGGCATCCACCACCGGGGACGTGCTAAGTGT
TTGGCTGGCCGGGTGGCGTCGCTGGGGTTCTAGAGCGAGCGAAGGGCCAA
CAACCGCCACCAGCAAACATCATCAATTCTCGCCTTGGCTCCACACCCAC
CCACTCACTCACCCACCCGACCTACGCCCGTCCCAACCCCACCGTACATA
TGCACAGAAAGGTCACAGCAACCATTCAACTGACAACAGCATGGCGCTCA
AGCGGATCAACAAGGAATTGCAGGACCTGGGACGAGATCCGCCTGCAAAC
TGCTCGGCAGGCCCTGTGGGCGACGACCTTTTTCACTGGCAAGCCACCAT
CATGGGTCCTGATGACTCGCCTTACAGCGGCGCCGTCTTCTTCCTCAACA
TTCATTTCCCTGCCGACTACCCCTTTAAGCCCCCCAAGGTGAACTTCACG
ACGCGTATTTACCACTGCAACATTAACGCGAACGGCGGCATCTGCCTGGA
CATCCTGAAGGACCAGTGGAGCCCTGCCCTGACAGTCTCCAAGGTCCTAC
TCTCCATCTGCTCCCTCCTGACTGACCCCAACCCAGACGATCCCCTGGTG
CCCGAGATCGCACAGCTGTACCGCACGGACCGGGGAAGGCACGACGCCAC
CGCACGCGAGTGGACCGCCAAGTATGCGATGTAG
back to top
Synonyms
Publications