NO11G03400.1, NO11G03400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03400.1
Unique NameNO11G03400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2274
Alignment locationchr11:1089004..1092335 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1089004..1092335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03400.1 vs.
Match: CCI47414.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 67.8 bits (164), Expect = 9.100e-8
Identity = 58/222 (26.13%), Postives = 103/222 (46.40%), Query Frame = 0 
Query:  177 NCIRWRFQRDENGKVKTDPFTGRPLMESNARLVCWPDGSRQLLLGRQRLECQATAIGERRLLVD---------QGLREGGTEGGPKRYLEPVAMIQEKMILQRESVGGKGGGRAGRRRSGLAGREIEKKATIKKFESVMDPEREKEMKRRQRDEEDRLERKQK----------RKAAAFGGRLTKGFLEDEEEIDPSSNVKRIKADVMAG-GRRGEVGRGGG 379
            N +RWR++R+E G +  DP T RP+ E+N+++V W DG+  L +GR+ L      I    L V+         Q  +      G K  LE    + EK+ ++  +   K              + ++K   +K++ S +D  RE+E + +  ++  RL+ ++K          R A      L +GF E+E++ + + +V  IK    +G  R+G   + GG
Sbjct:  162 NYVRWRYRRNEKGNLLMDPITHRPMKETNSKVVQWEDGTLTLFVGREALYLARQKIANSFLFVNEVSLDERAFQSNKVEDNATGQKTVLECHGRLDEKLTIRPMTTSSKSHKSLTMSMRAKHNKGVQK---LKEYVSELDASREQEQRAKINEDRLRLQHRKKARQTFEYDRGRAARMDASFLEEGFEEEEDDEEEADHVGSIKEQFGSGKSRKGSTRKTGG 380
The following BLAST results are available for this feature:
BLAST of NO11G03400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CCI47414.19.100e-826.13unnamed protein product [Albugo candida][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03400NO11G03400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03400.1NO11G03400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03400.1.cds1NO11G03400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03400.1.cds2NO11G03400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03400.1.cds3NO11G03400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03400.1.cds4NO11G03400.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03400.1.cds5NO11G03400.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03400.1.cds6NO11G03400.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03400.1.cds7NO11G03400.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03400.1 ID=NO11G03400.1|Name=NO11G03400.1|organism=Nannochloropsis oceanica|type=mRNA|length=2274bp
AGACCACAGGAGCCAGTCTGTACGGCTTCAAGGATCTTACTCGAGCTATG
GCCTCTAACAAGAAGGAGCTGGATGAGCTGGGCCTAGGGAGCGACTCGGA
GGAGGATGAGCAAGAGGAGGAGCAAGCGGTCCCTCCTCCGCCCGCAGACG
AGACGTCGCCATCAGCAGCAGCAGCCACAGAGGCTAAAGGAGGGTTAGAA
GCAGCAATTGAGGCCTCAATTCCAGAGCCTCCCCTGCCCGCGCGAAGCAT
GATGAGTGCCCGCATCGACACGTTAGGCCTGGGCTCGTCATCAGAAGAAG
AGGAGGAGGAGGAGGAGGAGGATGGAGACGGAGGAGAGCGAAATGTTTTG
CCTTCCAGTGCAACGGACCTTGGGCGACAGACAAGATCCGAGGCCCGCAT
CGCTGCTGCCGAGCCCGTGGTGGTCACCGTACCACTGGTGCCGCGCCTTC
CTCCCAAGACGCAGGCCATCCATGTGTCGCTGAACCCCCTGTTTGTGGGA
GTGCAGTTTAAGGAGAGCAGTGACAAGGGTCTGGCCGTAGAGTGGGCTCA
GGGGCCCAAGGGTCGAAGGGGCAGCAATTGCATCCGTTGGCGGTTTCAGA
GGGACGAAAATGGGAAGGTCAAGACGGATCCATTCACCGGTCGGCCTTTG
ATGGAGAGTAATGCCCGCCTTGTCTGCTGGCCGGACGGGAGCCGACAGCT
GCTGCTAGGACGACAGCGGTTGGAGTGTCAGGCGACGGCGATAGGGGAGA
GGCGCCTGCTCGTGGACCAGGGCCTGAGGGAGGGAGGGACCGAGGGAGGG
CCCAAACGCTACCTGGAACCTGTAGCCATGATCCAAGAGAAGATGATTCT
GCAGCGAGAAAGCGTGGGGGGGAAGGGGGGAGGGAGGGCGGGCCGACGCC
GGTCGGGGCTGGCGGGGAGGGAGATTGAAAAGAAGGCGACGATCAAGAAG
TTCGAGTCGGTGATGGACCCCGAGAGGGAGAAGGAGATGAAGAGGCGGCA
ACGTGACGAGGAAGATCGTTTGGAGCGAAAGCAGAAACGCAAAGCTGCCG
CGTTCGGGGGCCGGCTAACGAAAGGTTTTCTGGAGGACGAGGAGGAGATT
GATCCCAGTAGTAATGTGAAGAGAATCAAGGCGGATGTGATGGCGGGGGG
GAGGAGGGGGGAGGTAGGAAGGGGGGGAGGAGGGGGGGCAGGGGGGGCGA
TGACGATGAGGATGATGATGACGAGGAGGAGAGTAGTGACGAGGACGGAA
GGGGCATGCAGGCACAGAGGAAGAGCTTGAGGAAGAGGCGGCAGGCGCTG
GTAAGGGGAAGGGATGAGGGGGAGAGTGAAGAGGAGGATGAAGAGGAGGT
GGAGGATGAGAAGGAGGAGGACGATGACGACGACGACGACGAGGACGAGG
ACGAGGAGCAGCAGGTGGTGCGACGGCGAAGGGGAGGAGGGGGAGGGGAA
GGGGAGGGGGTGGGGGAGGAAGAGGAAGAGGGAGAGTCGAAGAAGCCGGG
AGTGGAGCTGCTGCAGGAGGAGAGCAGTGACGAGGATGATGACGATGACA
GCGATGATGGCGATGACAGCGACTAGGCCGTACGTGGAAGGAGGGAGGGA
ATGAGGGAGGGAGGATGTGGATCCCGAGAGGGAGAAGAAGGAAGATATAA
GGCGACAGGCGCGCTGGGCCCCTCTCCATCAAATGGATGGAGCAGGCAAA
CGATCGGGCTACGGTGAGAGGGAAAAAAAGGGAGAAGATGAAGGAGGAGA
AGGTGGGGAAGAAATGGAGAAGTAAAACGAAATTCTTTCCGGTTTCGCGC
GCTTTTGCTTGACAGGAAGACAAAGCAATAGGTAAAGAAAGGTAAAGAAA
GAGGAAAATGGAGAAGCAAAACAGAGAGGGGCCATTGGATCGTCATCTTT
ATCTTTATGTTGTAGCTACCGTTGAGTGCCACCACGGACCGCAAACCTCC
AAAATTCAAAAATTCAAAACTCAAAATATTTTTTTCCGCCTTCAATCAGT
ATGATTTGAATCTCGGACCGCCTCCCTGTCTCCCTCCCTCCCTCCCGTGG
GGATTGCTGCGTGGTCGTAGGTCTTCTCAGACGTACACACGCGCATCCCC
CCCACACCCGCACGCCCACGCCCACCCTGCTTGTTTCAATGATACAAATT
ATGTCCACACACTCTTCATCGTCATTTTACTTTCGTCGGCCTCTTTTTTA
CCGACCTCTACCTCCCTCATCCCAAGGGAAGGTCCCTGCTATGATTGCTT
CTGTCTTCCTCCCCCCCTCCCTCC
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protein sequence of NO11G03400.1

>NO11G03400.1-protein ID=NO11G03400.1-protein|Name=NO11G03400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MASNKKELDELGLGSDSEEDEQEEEQAVPPPPADETSPSAAAATEAKGGL
EAAIEASIPEPPLPARSMMSARIDTLGLGSSSEEEEEEEEEDGDGGERNV
LPSSATDLGRQTRSEARIAAAEPVVVTVPLVPRLPPKTQAIHVSLNPLFV
GVQFKESSDKGLAVEWAQGPKGRRGSNCIRWRFQRDENGKVKTDPFTGRP
LMESNARLVCWPDGSRQLLLGRQRLECQATAIGERRLLVDQGLREGGTEG
GPKRYLEPVAMIQEKMILQRESVGGKGGGRAGRRRSGLAGREIEKKATIK
KFESVMDPEREKEMKRRQRDEEDRLERKQKRKAAAFGGRLTKGFLEDEEE
IDPSSNVKRIKADVMAGGRRGEVGRGGGGGAGGAMTMRMMMTRRRVVTRT
EGACRHRGRA*
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mRNA from alignment at chr11:1089004..1092335+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03400.1 ID=NO11G03400.1|Name=NO11G03400.1|organism=Nannochloropsis oceanica|type=mRNA|length=3332bp|location=Sequence derived from alignment at chr11:1089004..1092335+ (Nannochloropsis oceanica)
AGACCACAGGAGCCAGTCTGTACGGCTTCAAGGATCTTACTCGAGCTATG
GCCTCTAACAAGAAGGAGCTGGATGAGCTGGGCCTAGGGAGCGACTCGGA
GGAGGATGAGCAAGAGGAGGAGCAAGCGGTCCCTCCTCCGCCCGCAGACG
AGACGTCGCCATCAGCAGCAGCAGCCACAGAGGCTAAAGGAGGGTTAGAA
GCAGCAATTGAGGCCTCAATTCCAGGTATGCATCGACCTCAAGTTCGCCA
TCGCTTTCTACTTCTTACTTCCTTACTTTCTTCACTTACTCACCCCTCTA
TCGTTACCATGTTTCCTTCCCACTTCTTCACTCAGAGCCTCCCCTGCCCG
CGCGAAGCATGATGAGTGCCCGCATCGACACGTTAGGCCTGGGCTCGTCA
TCAGAAGAAGAGGAGGAGGAGGAGGAGGAGGATGGAGACGGAGGAGAGCG
AAATGTTTTGCCTTCCAGTGCAACGGACCTTGGGCGACAGACAAGAGTGG
GTCGATGGACAGAGGGGGAGGGAGGGAGGGAGAAATGGAGGGAGGATCGT
ACTCTTACACATATATTTATACATATACTCTGTGTCAATGCAATTATAGC
TCACTGTCTTCTTCTCTCTTTTTAAATCAAGTCGGAAATCTGCCTGCTAC
TACCGCCTCGCCCACCGCCCGCATGACACTCACATTTGATCCCTCTCTCC
CTCCCTCCTCCCTCCACGCTAACAGTCCGAGGCCCGCATCGCTGCTGCCG
AGCCCGTGGTGGTCACCGTACCACTGGTGCCGCGCCTTCCTCCCAAGACG
CAGGCCATCCATGTGTCGCTGAACCCCCTGTTTGTGGGAGTGCAGTTTAA
GGAGAGCAGTGACAAGGGTCTGGGTGGGTGCGGGGGGAGAGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGATGGAGGGAGGGAAGTTGATGGAGTCA
AGCTATTCATGTCTCCCTCCCTCCCTCCTTCCATCGCATTCGCTAGCCGT
AGAGTGGGCTCAGGGGCCCAAGGGTCGAAGGGGCAGCAATTGCATCCGTT
GGCGGTTTCAGAGGGACGAAAATGGGAAGGTAGGTGGAGTAGGGGGGAAG
GGAGGGGGGCAAGGGAGGGAGGGAGGAAGGGGGGGAAGGGAGGGGGTGCA
GAGGAAGAGGAGGAGACGAGAGAACGGAGTGGACTTATGGCCTCACTGAT
TGACTCGCTCACTTCTCCTTCCTCCCCGCCTACCACTAAAGATAGTTATG
ATTGCCCGACTGATTCACTTGCTTACACATCTCCTGATAGCCTGCCGAAC
TGACTCACTTTCACACTCTCCCCCTCCCACTCTCTTCTCGATTATAGGTC
AAGACGGATCCATTCACCGGTCGGCCTTTGATGGAGAGTAATGCCCGCCT
TGTCTGCTGGCCGGACGGGAGCCGACAGCTGCTGCTAGGACGACAGCGGT
TGGAGTGTCAGGCGACGGCGATAGGGGAGAGGCGCCTGCTCGTGGACCAG
GGCCTGAGGGAGGGAGGGACCGAGGGAGGGTAAGTGGCTTCTGCTTGTTG
CAGGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AAGGAGGGATTAGGGGCAGGGCTGACAAGAGGAGATAGAGGATGAAAATC
ACTCACGACAAACCTCCCTCGTTTCTTTCCTCCCTCCCTCCCTCCCTCCC
TCCGTCAGGCCCAAACGCTACCTGGAACCTGTAGCCATGATCCAAGAGAA
GATGATTCTGCAGCGAGAAAGCGTGGGGGGGAAGGGGGGAGGGAGGGCGG
GCCGACGCCGGTCGGGGCTGGCGGGGAGGGAGATTGAAAAGAAGGCGACG
ATCAAGAAGTTCGAGTCGGTGATGGACCCCGAGAGGGAGAAGGAGATGAA
GAGGCGGTAGGAGAGGGAGGGAGGGAGGGAGGGGATAAAGGAGGGAGGTG
GGGAGGGAGGGGAAAGAGAGGGGGAGGTTTCAATAAAAGTAACTATGTCA
CTCACCAACCAAGACCATTCCATTCCCCCTCCCTCCCTCCCTCACTCTGT
CGCAGGCAACGTGACGAGGAAGATCGTTTGGAGCGAAAGCAGAAACGCAA
AGCTGCCGCGTTCGGGGGCCGGCTAACGAAAGGTTTTCTGGAGGACGAGG
AGGAGATTGATCCCAGTAGTAATGTGAAGAGAATCAAGGCGGATGTGATG
GCGGGGGGGAGGAGGGGGGAGGTAGGAAGGGGGGGAGGAGGGGGGGCAGG
GGGGGCGATGACGATGAGGATGATGATGACGAGGAGGAGAGTAGTGACGA
GGACGGAAGGGGCATGCAGGCACAGAGGAAGAGCTTGAGGAAGAGGCGGC
AGGCGCTGGTAAGGGGAAGGGATGAGGGGGAGAGTGAAGAGGAGGATGAA
GAGGAGGTGGAGGATGAGAAGGAGGAGGACGATGACGACGACGACGACGA
GGACGAGGACGAGGAGCAGCAGGTGGTGCGACGGCGAAGGGGAGGAGGGG
GAGGGGAAGGGGAGGGGGTGGGGGAGGAAGAGGAAGAGGGAGAGTCGAAG
AAGCCGGGAGTGGAGCTGCTGCAGGAGGAGAGCAGTGACGAGGATGATGA
CGATGACAGCGATGATGGCGATGACAGCGACTAGGCCGTACGTGGAAGGA
GGGAGGGAATGAGGGAGGGAGGATGTGGATCCCGAGAGGGAGAAGAAGGA
AGATATAAGGCGACAGGCGCGCTGGGCCCCTCTCCATCAAATGGATGGAG
CAGGCAAACGATCGGGCTACGGTGAGAGGGAAAAAAAGGGAGAAGATGAA
GGAGGAGAAGGTGGGGAAGAAATGGAGAAGTAAAACGAAATTCTTTCCGG
TTTCGCGCGCTTTTGCTTGACAGGAAGACAAAGCAATAGGTAAAGAAAGG
TAAAGAAAGAGGAAAATGGAGAAGCAAAACAGAGAGGGGCCATTGGATCG
TCATCTTTATCTTTATGTTGTAGCTACCGTTGAGTGCCACCACGGACCGC
AAACCTCCAAAATTCAAAAATTCAAAACTCAAAATATTTTTTTCCGCCTT
CAATCAGTATGATTTGAATCTCGGACCGCCTCCCTGTCTCCCTCCCTCCC
TCCCGTGGGGATTGCTGCGTGGTCGTAGGTCTTCTCAGACGTACACACGC
GCATCCCCCCCACACCCGCACGCCCACGCCCACCCTGCTTGTTTCAATGA
TACAAATTATGTCCACACACTCTTCATCGTCATTTTACTTTCGTCGGCCT
CTTTTTTACCGACCTCTACCTCCCTCATCCCAAGGGAAGGTCCCTGCTAT
GATTGCTTCTGTCTTCCTCCCCCCCTCCCTCC
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Coding sequence (CDS) from alignment at chr11:1089004..1092335+

>NO11G03400.1 ID=NO11G03400.1|Name=NO11G03400.1|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at chr11:1089004..1092335+ (Nannochloropsis oceanica)
ATGGCCTCTAACAAGAAGGAGCTGGATGAGCTGGGCCTAGGGAGCGACTC
GGAGGAGGATGAGCAAGAGGAGGAGCAAGCGGTCCCTCCTCCGCCCGCAG
ACGAGACGTCGCCATCAGCAGCAGCAGCCACAGAGGCTAAAGGAGGGTTA
GAAGCAGCAATTGAGGCCTCAATTCCAGAGCCTCCCCTGCCCGCGCGAAG
CATGATGAGTGCCCGCATCGACACGTTAGGCCTGGGCTCGTCATCAGAAG
AAGAGGAGGAGGAGGAGGAGGAGGATGGAGACGGAGGAGAGCGAAATGTT
TTGCCTTCCAGTGCAACGGACCTTGGGCGACAGACAAGATCCGAGGCCCG
CATCGCTGCTGCCGAGCCCGTGGTGGTCACCGTACCACTGGTGCCGCGCC
TTCCTCCCAAGACGCAGGCCATCCATGTGTCGCTGAACCCCCTGTTTGTG
GGAGTGCAGTTTAAGGAGAGCAGTGACAAGGGTCTGGCCGTAGAGTGGGC
TCAGGGGCCCAAGGGTCGAAGGGGCAGCAATTGCATCCGTTGGCGGTTTC
AGAGGGACGAAAATGGGAAGGTCAAGACGGATCCATTCACCGGTCGGCCT
TTGATGGAGAGTAATGCCCGCCTTGTCTGCTGGCCGGACGGGAGCCGACA
GCTGCTGCTAGGACGACAGCGGTTGGAGTGTCAGGCGACGGCGATAGGGG
AGAGGCGCCTGCTCGTGGACCAGGGCCTGAGGGAGGGAGGGACCGAGGGA
GGGCCCAAACGCTACCTGGAACCTGTAGCCATGATCCAAGAGAAGATGAT
TCTGCAGCGAGAAAGCGTGGGGGGGAAGGGGGGAGGGAGGGCGGGCCGAC
GCCGGTCGGGGCTGGCGGGGAGGGAGATTGAAAAGAAGGCGACGATCAAG
AAGTTCGAGTCGGTGATGGACCCCGAGAGGGAGAAGGAGATGAAGAGGCG
GCAACGTGACGAGGAAGATCGTTTGGAGCGAAAGCAGAAACGCAAAGCTG
CCGCGTTCGGGGGCCGGCTAACGAAAGGTTTTCTGGAGGACGAGGAGGAG
ATTGATCCCAGTAGTAATGTGAAGAGAATCAAGGCGGATGTGATGGCGGG
GGGGAGGAGGGGGGAGGTAGGAAGGGGGGGAGGAGGGGGGGCAGGGGGGG
CGATGACGATGAGGATGATGATGACGAGGAGGAGAGTAGTGACGAGGACG
GAAGGGGCATGCAGGCACAGAGGAAGAGCTTGA
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Synonyms
Publications