NO11G03270.2, NO11G03270.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03270.2
Unique NameNO11G03270.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1834
Alignment locationchr11:1024185..1026278 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:1024185..1026278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03270.2 vs.
Match: EWM24873.1 (hypothetical protein Naga_101100g1 [Nannochloropsis gaditana])

HSP 1 Score: 194.5 bits (493), Expect = 5.800e-46
Identity = 108/185 (58.38%), Postives = 130/185 (70.27%), Query Frame = 0 
Query:   61 SCQGFIATAFLLALLPSPSRATFGLTSRRTASPPP--PPPLPATPPTPLA-PITHASSLSRKGKDDDDDKS---PSLIEDILRRLRGDFSHPLSDSTRLVVHYDCRDYRSGLRGLGLRHVWRDVGQTFLEEEGEEEEGM--EGVGRGGRKAGWKAWVFPWEIRGGMSVKRIHGVGIPQFWRMGRL 238
            S  GFI    ++ LLP  S+A FGLTSRR   PPP  PPPLP+ PPT +  P+      S+K   ++DD S   PSL+E+ILRRLRGDFSHPL++STRLVVHYDCRDYRSGLRGLGLRHVWRDVG + L +E    +      +G    + GW+ W FPWEIRGG+SVKRI GV +PQFWRM R+
Sbjct:   16 SVMGFIL--LVVVLLPPYSQAAFGLTSRR---PPPLAPPPLPSAPPTSMGVPLARNDPSSQKWDAENDDASPPQPSLLEEILRRLRGDFSHPLTESTRLVVHYDCRDYRSGLRGLGLRHVWRDVGLSLLSDEDTATDAALPMSLGPALGEQGWRTWCFPWEIRGGVSVKRIQGVSVPQFWRMRRV 195
The following BLAST results are available for this feature:
BLAST of NO11G03270.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24873.15.800e-4658.38hypothetical protein Naga_101100g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03270NO11G03270Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03270.2NO11G03270.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03270.2.cds1NO11G03270.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03270.2.cds2NO11G03270.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03270.2.cds3NO11G03270.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03270.2 ID=NO11G03270.2|Name=NO11G03270.2|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp
ATTGTGGCTGAGAAGTGTGATCTGCGGTGGTGTAGAGGTAGAGGTGTAGG
TGGGTTTTAGAGACTGAAAGCCGTCCTGATCATCGTCATCTCCAGCAACG
TCCTGAGGCGTGTCATATTATTCTTATCTGACGAGTGGAGCACAATCCCA
TCTGTTACGAACAGAGCACCGCGGGGAGGATGTCTGTGGGTCACAGACAC
GCTGCTGATAAGCGCTTTGCGGCTTGATGTGTGGCATTCACCGTCACAGG
AGCCAAAACTCGCCAACCGGCGTCGAGCTTGGCGATGCACACAAAGCAAC
CAGCAATTGTCCCCTGCAAGCACCTTCATCCCCCTTTTTTACTTCCCTTC
ACGCTCACTTTCAGGGAATGAGACACATGTCACGAGAAAGACGAGCTGGA
GGGGTTTCCTGCCAGGGTTTTATCGCCACAGCGTTCCTCCTGGCCCTCCT
TCCATCTCCCTCTCGCGCGACGTTTGGCCTCACTTCCCGCCGCACGGCTT
CTCCCCCTCCACCCCCTCCCCTTCCTGCAACACCACCGACACCTCTTGCG
CCTATAACGCACGCCAGTTCCTTGTCCCGTAAGGGCAAAGACGACGATGA
CGACAAGTCTCCTTCCCTCATCGAAGACATTCTGCGCCGGCTCCGAGGGG
ACTTCTCCCACCCCCTGTCGGACTCAACTCGCCTGGTCGTTCACTACGAC
TGTCGAGATTACCGCTCGGGCCTCCGGGGGCTAGGACTTAGGCATGTCTG
GCGGGATGTGGGTCAGACGTTCTTGGAGGAGGAGGGGGAGGAGGAGGAAG
GGATGGAGGGGGTTGGGAGAGGAGGGAGGAAGGCCGGGTGGAAGGCGTGG
GTGTTCCCGTGGGAGATACGGGGAGGCATGTCAGTGAAGAGGATCCATGG
CGTGGGCATACCGCAATTTTGGCGGATGGGACGGCTCGACCGCCTCTTAT
GGGGATCCGTCCACGCGATCTCTCTTCCTACGTCCACCTCCGTGGGCGCC
GCATTCGACGGGGCTTCCCAACACATGCGGTTTGAAATGTCGCATGCTAC
GGCTCTCTCCCTCCCCTTCCTCGACAAGGAGGGGGAGTGGGGATTCTTGG
ACGGGCTGCCTATTCGAATGACGCTCAGCCCTTTACTGGCACGGCGGCCA
ATTAATCTGAGTGCGGCGATCCCCCGTCGTCCTGCCTTCCATCCATCCGT
GGACCTCCTGTCCCTCGGCCTGGGTTGCGAGTGGGTCGAGCCCATGGTGG
GAGGGTGGGAGGGAGGGAGGGGAGGAGGAAAGGAGGGAGAAAAAGGTGTG
GCGGCGGTGCGGTTCGGGATTTCGGCACGGTCTCTCCGGTAAGATGGCGT
ATCAAAACGGAAGGTTCCACAGTATATGCACTCTTACTCACCTTGTCTTC
CCTTAATCCTCCCTCCCTCCCCTCTATCTCCCTCCCTACCTCCCTCCTCG
TTCCAGCCCCGGTGGCACCCTGCGAATCTCATGGCAAGACTCCCGCTTGC
TGGATGGGAAGGGCCTCTCCACTGCTACCCTCTACATGCCAATAACCTCT
CTTGGCCCCTCTGAGCGTCCGTGGAGGCATGCGTCAGTGTCGCTGGAGCA
CACGTGGCAGCTCCCGTGGCTGGAGGGGGGTTGGAGGAGGTGGGGGAGGA
GGGGAGAGGGGGAGGAGTAGAGGGAGGGAATGATGTGTATAAAAGATGAA
AGGACGGGGGGGTAGATAGGAGGGTTGTGTAGAGAGGATGGAAAGAGAGG
AGGCGGAGGGTAAGGGTTGAGAAGGGAAAAGGAGTCGGCGATCAAAAGTA
TTCGGCAGGGTGCAACAACGTCTTATGAGGGCCT
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protein sequence of NO11G03270.2

>NO11G03270.2-protein ID=NO11G03270.2-protein|Name=NO11G03270.2|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MCGIHRHRSQNSPTGVELGDAHKATSNCPLQAPSSPFFTSLHAHFQGMRH
MSRERRAGGVSCQGFIATAFLLALLPSPSRATFGLTSRRTASPPPPPPLP
ATPPTPLAPITHASSLSRKGKDDDDDKSPSLIEDILRRLRGDFSHPLSDS
TRLVVHYDCRDYRSGLRGLGLRHVWRDVGQTFLEEEGEEEEGMEGVGRGG
RKAGWKAWVFPWEIRGGMSVKRIHGVGIPQFWRMGRLDRLLWGSVHAISL
PTSTSVGAAFDGASQHMRFEMSHATALSLPFLDKEGEWGFLDGLPIRMTL
SPLLARRPINLSAAIPRRPAFHPSVDLLSLGLGCEWVEPMVGGWEGGRGG
GKEGEKGVAAVRFGISARSLR*
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mRNA from alignment at chr11:1024185..1026278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03270.2 ID=NO11G03270.2|Name=NO11G03270.2|organism=Nannochloropsis oceanica|type=mRNA|length=2094bp|location=Sequence derived from alignment at chr11:1024185..1026278- (Nannochloropsis oceanica)
ATTGTGGCTGAGAAGTGTGATCTGCGGTGGTGTAGAGGTAGAGGTGTAGG
TGGGTTTTAGAGACTGAAAGCCGTCCTGATCATCGTCATCTCCAGCAACG
TCCTGAGGCGTGTCATATTATTCTTATCTGACGAGTGGAGCACAATCCCA
TCTGTTACGAACAGAGCACCGCGGGGAGGATGTCTGTGGGTCACAGACAC
GCTGCTGATAAGCGCTTTGCGGCTTGATGTGTGGCATTCACCGTCACAGG
AGCCAAAACTCGCCAACCGGCGTCGAGCTTGGCGATGCACACAAAGCAAC
CAGCAATTGTCCCCTGCAAGCACCTTCATCCCCCTTTTTTACTTCCCTTC
ACGCTCACTTTCAGGGAATGAGACACATGTCACGAGAAAGACGAGCTGGA
GGGGTTTCCTGCCAGGGTTTTATCGCCACAGCGTTCCTCCTGGCCCTCCT
TCCATCTCCCTCTCGCGCGACGTTTGGCCTCACTTCCCGCCGCACGGCTT
CTCCCCCTCCACCCCCTCCCCTTCCTGCAACACCACCGACACCTCTTGCG
CCTATAACGCACGCCAGTTCCTTGTCCCGTAAGGGCAAAGACGACGATGA
CGACAAGTCTCCTTCCCTCATCGAAGACATTCTGCGCCGGCTCCGAGGGG
ACTTCTCCCACCCCCTGTCGGACTCAACTCGCCTGGTCGTTCACTACGAC
TGTCGAGATTACCGCTCGGGCCTCCGGGGGCTAGGACTTAGGCATGTCTG
GCGGGATGTGGGTCAGACGTTCTTGGAGGAGGAGGGGGAGGAGGAGGAAG
GGATGGAGGGGGTTGGGAGAGGAGGGAGGAAGGCCGGGTGGAAGGCGTGG
GTGTTCCCGTGGGAGATACGGGGAGGCATGTCAGTGAAGAGGATCCATGG
CGTGGGCATACCGCAATTTTGGCGGATGGGACGGGTGAGTGCTCGTTCGT
TGGGTGGGTAGAGGTGGATATGGAATGCCGGCATCTCACCCGCCCTCCCC
TCCTTCCCTCCCTCCCCCCCTCCCTGCCTTTGTGTCTCGCTCCCTACACA
GCTCGACCGCCTCTTATGGGGATCCGTCCACGCGATCTCTCTTCCTACGT
CCACCTCCGTGGGCGCCGCATTCGACGGGGCTTCCCAACACATGCGGTTT
GAAATGTCGCATGCTACGGCTCTCTCCCTCCCCTTCCTCGACAAGGAGGG
GGAGTGGGGATTCTTGGACGGGCTGCCTATTCGAATGACGCTCAGCCCTT
TACTGGCACGGCGGCCAATTAATCTGAGGTAGGTAGGTTGCATGAAAGTG
AGGAGAGTGAGAGGGAGGGAGGGAGGGAGGGGAGGGTGGACAGCAAGGCA
TGACGCGTGGAATCAATTGTTGACCGACTCTTCCTTCCCTCCTTCCCTTC
CTCCTTCTCACAAAATAACAGTGCGGCGATCCCCCGTCGTCCTGCCTTCC
ATCCATCCGTGGACCTCCTGTCCCTCGGCCTGGGTTGCGAGTGGGTCGAG
CCCATGGTGGGAGGGTGGGAGGGAGGGAGGGGAGGAGGAAAGGAGGGAGA
AAAAGGTGTGGCGGCGGTGCGGTTCGGGATTTCGGCACGGTCTCTCCGGT
AAGATGGCGTATCAAAACGGAAGGTTCCACAGTATATGCACTCTTACTCA
CCTTGTCTTCCCTTAATCCTCCCTCCCTCCCCTCTATCTCCCTCCCTACC
TCCCTCCTCGTTCCAGCCCCGGTGGCACCCTGCGAATCTCATGGCAAGAC
TCCCGCTTGCTGGATGGGAAGGGCCTCTCCACTGCTACCCTCTACATGCC
AATAACCTCTCTTGGCCCCTCTGAGCGTCCGTGGAGGCATGCGTCAGTGT
CGCTGGAGCACACGTGGCAGCTCCCGTGGCTGGAGGGGGGTTGGAGGAGG
TGGGGGAGGAGGGGAGAGGGGGAGGAGTAGAGGGAGGGAATGATGTGTAT
AAAAGATGAAAGGACGGGGGGGTAGATAGGAGGGTTGTGTAGAGAGGATG
GAAAGAGAGGAGGCGGAGGGTAAGGGTTGAGAAGGGAAAAGGAGTCGGCG
ATCAAAAGTATTCGGCAGGGTGCAACAACGTCTTATGAGGGCCT
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Coding sequence (CDS) from alignment at chr11:1024185..1026278-

>NO11G03270.2 ID=NO11G03270.2|Name=NO11G03270.2|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr11:1024185..1026278- (Nannochloropsis oceanica)
ATGTGTGGCATTCACCGTCACAGGAGCCAAAACTCGCCAACCGGCGTCGA
GCTTGGCGATGCACACAAAGCAACCAGCAATTGTCCCCTGCAAGCACCTT
CATCCCCCTTTTTTACTTCCCTTCACGCTCACTTTCAGGGAATGAGACAC
ATGTCACGAGAAAGACGAGCTGGAGGGGTTTCCTGCCAGGGTTTTATCGC
CACAGCGTTCCTCCTGGCCCTCCTTCCATCTCCCTCTCGCGCGACGTTTG
GCCTCACTTCCCGCCGCACGGCTTCTCCCCCTCCACCCCCTCCCCTTCCT
GCAACACCACCGACACCTCTTGCGCCTATAACGCACGCCAGTTCCTTGTC
CCGTAAGGGCAAAGACGACGATGACGACAAGTCTCCTTCCCTCATCGAAG
ACATTCTGCGCCGGCTCCGAGGGGACTTCTCCCACCCCCTGTCGGACTCA
ACTCGCCTGGTCGTTCACTACGACTGTCGAGATTACCGCTCGGGCCTCCG
GGGGCTAGGACTTAGGCATGTCTGGCGGGATGTGGGTCAGACGTTCTTGG
AGGAGGAGGGGGAGGAGGAGGAAGGGATGGAGGGGGTTGGGAGAGGAGGG
AGGAAGGCCGGGTGGAAGGCGTGGGTGTTCCCGTGGGAGATACGGGGAGG
CATGTCAGTGAAGAGGATCCATGGCGTGGGCATACCGCAATTTTGGCGGA
TGGGACGGCTCGACCGCCTCTTATGGGGATCCGTCCACGCGATCTCTCTT
CCTACGTCCACCTCCGTGGGCGCCGCATTCGACGGGGCTTCCCAACACAT
GCGGTTTGAAATGTCGCATGCTACGGCTCTCTCCCTCCCCTTCCTCGACA
AGGAGGGGGAGTGGGGATTCTTGGACGGGCTGCCTATTCGAATGACGCTC
AGCCCTTTACTGGCACGGCGGCCAATTAATCTGAGTGCGGCGATCCCCCG
TCGTCCTGCCTTCCATCCATCCGTGGACCTCCTGTCCCTCGGCCTGGGTT
GCGAGTGGGTCGAGCCCATGGTGGGAGGGTGGGAGGGAGGGAGGGGAGGA
GGAAAGGAGGGAGAAAAAGGTGTGGCGGCGGTGCGGTTCGGGATTTCGGC
ACGGTCTCTCCGGTAA
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Synonyms
Publications