NO11G03150.1, NO11G03150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03150.1
Unique NameNO11G03150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length665
Alignment locationchr11:989321..990766 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:989321..990766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G03150.1 vs.
Match: XP_005855009.1 (thioredoxin-like protein 1 [Nannochloropsis gaditana CCMP526]; EKU21349.1 thioredoxin-like protein 1 [Nannochloropsis gaditana CCMP526]; EWM24889.1 thioredoxin-like protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 309.7 bits (792), Expect = 5.900e-81
Identity = 153/174 (87.93%), Postives = 165/174 (94.83%), Query Frame = 0
Query:    3 EGPPPPPPPPSNEIVDITDKIAKSECFVLNADPKYPWDNLFMGDDRLQLRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFDDAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYTALSKLRLFGTPLQGTDVNKIQKQGQQ 177
            EGPP PPPPPSNEIVDITDKIAK ECFVLNADPKYPW+NLFMGDDRLQLRSDTDEQL+LHLVFSE+VKVHS+NLVAPE +AAP TVKLYLNKTSFSFDDAE+IEPTQVLELTEED+K +KVTLLKFVKFQRVSSLTIF+E+N GA+YTALS LRLFGTPLQGTDV+KIQKQ  Q
Sbjct:    4 EGPPAPPPPPSNEIVDITDKIAKPECFVLNADPKYPWENLFMGDDRLQLRSDTDEQLILHLVFSEAVKVHSLNLVAPEMEAAPATVKLYLNKTSFSFDDAENIEPTQVLELTEEDYKAEKVTLLKFVKFQRVSSLTIFVENNNGADYTALSMLRLFGTPLQGTDVSKIQKQPAQ 177          
The following BLAST results are available for this feature:
BLAST of NO11G03150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855009.15.900e-8187.93thioredoxin-like protein 1 [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03150NO11G03150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03150.1NO11G03150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03150.1.cds1NO11G03150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03150.1.cds2NO11G03150.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03150.1.cds3NO11G03150.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03150.1.cds4NO11G03150.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03150.1.cds5NO11G03150.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03150.1 ID=NO11G03150.1|Name=NO11G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=665bp
ATCACAGACGAGCAAACGATGGAAGAAGGTCCACCACCCCCGCCACCCCC
GCCCTCAAACGAGATTGTGGATATAACCGACAAGATTGCCAAGTCGGAGT
GTTTTGTGTTGAACGCGGATCCCAAGTACCCGTGGGACAACCTATTTATG
GGCGATGATCGTCTTCAGCTCCGATCTGATACCGACGAGCAATTGGTGTT
GCATTTGGTGTTTTCTGAATCAGTGAAAGTGCATAGCATGAATCTTGTCG
CGCCAGAGCCAGACGCGGCCCCTACCACGGTAAAGCTGTACTTGAATAAG
ACCTCCTTCTCCTTCGATGACGCCGAGAGTATCGAGCCCACGCAGGTACT
GGAGCTGACCGAGGAGGATCACAAGCCCGACAAGGTGACGCTGCTGAAAT
TCGTCAAGTTCCAGCGCGTCTCCTCACTGACCATATTCATCGAGAGCAAC
GGGGGCGCTGAATACACAGCTCTATCCAAGCTTCGATTGTTTGGCACGCC
GCTGCAAGGCACCGACGTGAACAAGATCCAGAAGCAGGGGCAACAAAATT
AAGGCCTGCAAGGGTGAGGAAGAGGGGGAAAAGAGGTGTGTGGAGAGAGG
GAGAGAGGGCGCTTGCCCACTATCTGAGATGCTTTAAAAGAAAAAGAATT
GGACGAGAAACATCT
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protein sequence of NO11G03150.1

>NO11G03150.1-protein ID=NO11G03150.1-protein|Name=NO11G03150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MEEGPPPPPPPPSNEIVDITDKIAKSECFVLNADPKYPWDNLFMGDDRLQ
LRSDTDEQLVLHLVFSESVKVHSMNLVAPEPDAAPTTVKLYLNKTSFSFD
DAESIEPTQVLELTEEDHKPDKVTLLKFVKFQRVSSLTIFIESNGGAEYT
ALSKLRLFGTPLQGTDVNKIQKQGQQN*
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mRNA from alignment at chr11:989321..990766+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03150.1 ID=NO11G03150.1|Name=NO11G03150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp|location=Sequence derived from alignment at chr11:989321..990766+ (Nannochloropsis oceanica)
ATCACAGACGAGCAAACGATGGAAGAAGGTCCACCACCCCCGCCACCCCC GCCCTCAAACGAGATTGTGGATATAACCGACAAGATTGCCAAGTCGGAGT GTTTTGTGTTGAACGCGGTAGGTGTGAGAGAGTTCGACAGGGTGTGTCAG GAGGGCAGGATGGAGACAGAGGGGGCAGGGAGTGAGGTTCTAGGCAAGCT AGTCGGCATCGTGATGTAAAGGGAGCGGTATAACGACTATAGGACGGGTG TCTGCATTTGCTTCGGTTCCTTCCATGGTCCTTTTCCGTAAGCGCCGTTA TCCCCACATGCTATCCCTCCTTTCGTCACCCGCCCCCCCTTTCCCTCTCT CTCTTTTCCTCCTCACCCAAACAATTAGAAAGACGGCATTTCGATCACCT CTATATTCATCAGCAGTATGCCGCCGTCCTTACGCGTATGCGTCCCTTCC TCCCCTCCCTTCCTTTCCACACCCAGGATCCCAAGTACCCGTGGGACAAC CTATTTATGGGCGATGATCGTCTTCAGCTCCGATCTGATACCGACGAGCA ATTGGTGTTGCATTTGGTGTTTTCTGAATCAGTGAAAGTGCATAGCATGA ATCTTGTCGCGCCAGAGCCAGGTACATTGGATGGGTATGCGTGAGGGATT GTCGCCTCATGTATCATAACTGACCTCTTTCCTCCCTTTCTCATCACACG CCCGCCCGCCATTCCCCCCCCCCCCACCCATCCACCCCCCCAAATCCCTA CCCCCCCACCCCCCCACCCACATACATATATACACATATACATACAGACG CGGCCCCTACCACGGTAAAGCTGTACTTGAATAAGACCTCCTTCTCCTTC GATGACGCCGAGAGTATCGAGCCCACGCAGGTACTGGAGCTGACCGAGGA GGATCACAAGCCCGACAAGGTATATATATAAAGGAGGGAGGGAGGGAGGG AGGGAAGGAGGTTTAGGACTTTGGCTACTTGAACGAAAATGGATGTCCGG AATCATTTTTCATTTGAAAGAAGCGTCGTGGACTGGATGGCATTGACCCC TACCTCCCTCCCTCCCTCCCGCGAGTGCAGGTGACGCTGCTGAAATTCGT CAAGTTCCAGCGCGTCTCCTCACTGACCATATTCATCGAGAGCAACGGGG GCGCTGAATACACAGCTCTATCCAAGCTTCGATTGTTTGGCACGCCGCTG CAAGGCACCGACGTGAACAAGATCCAGAAGCAGGGGTAAGTGGGCGAGGG GGAGGGAGGGAGAGGCGTGAAATGTGGGACTGATGGGTTGCGCCTTTTTG TCTTTTTATTTTTATCACAGGCAACAAAATTAAGGCCTGCAAGGGTGAGG AAGAGGGGGAAAAGAGGTGTGTGGAGAGAGGGAGAGAGGGCGCTTGCCCA CTATCTGAGATGCTTTAAAAGAAAAAGAATTGGACGAGAAACATCT
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Coding sequence (CDS) from alignment at chr11:989321..990766+

>NO11G03150.1 ID=NO11G03150.1|Name=NO11G03150.1|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at chr11:989321..990766+ (Nannochloropsis oceanica)
ATGGAAGAAGGTCCACCACCCCCGCCACCCCCGCCCTCAAACGAGATTGT
GGATATAACCGACAAGATTGCCAAGTCGGAGTGTTTTGTGTTGAACGCGG
ATCCCAAGTACCCGTGGGACAACCTATTTATGGGCGATGATCGTCTTCAG
CTCCGATCTGATACCGACGAGCAATTGGTGTTGCATTTGGTGTTTTCTGA
ATCAGTGAAAGTGCATAGCATGAATCTTGTCGCGCCAGAGCCAGACGCGG
CCCCTACCACGGTAAAGCTGTACTTGAATAAGACCTCCTTCTCCTTCGAT
GACGCCGAGAGTATCGAGCCCACGCAGGTACTGGAGCTGACCGAGGAGGA
TCACAAGCCCGACAAGGTGACGCTGCTGAAATTCGTCAAGTTCCAGCGCG
TCTCCTCACTGACCATATTCATCGAGAGCAACGGGGGCGCTGAATACACA
GCTCTATCCAAGCTTCGATTGTTTGGCACGCCGCTGCAAGGCACCGACGT
GAACAAGATCCAGAAGCAGGGGCAACAAAATTAA
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Synonyms
Publications