NO11G03070.1, NO11G03070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03070.1
Unique NameNO11G03070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1921
Alignment locationchr11:961814..964109 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:961814..964109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G03070.1 vs.
Match: EWM24893.1 (Transmembrane receptor, eukaryota [Nannochloropsis gaditana])

HSP 1 Score: 763.1 bits (1969), Expect = 5.700e-217
Identity = 391/496 (78.83%), Postives = 430/496 (86.69%), Query Frame = 0
Query:   22 LLLLLDLPRVADAMIQNFHYVDETNPIFQLETFGFRPGGVMELNFNHFLVKVPEGMEHETVRAGFLMHLTESETTARQDIEEAIERLERDESDCWLDHPGPYDEVIDLSSPESWVEKNAHHTVAAGEEGLYSLIFVRCRPPLSAVSFNVNAKFYNPTARGPNFLSAGEAPLPTLYFAFFSLYVVAMVAWLMLCRRRKDHVHHIHHMMMALLFFKTLSLLFEAVRFHAYQTHGLTGHADGWAVVYYIFAFIKGVMRFMVILLIGTGWSLLKPYLSDKEKKVILAVLVLQVLDNTAMVVLDELSQTSPGSASWLTWRDIFHLIDILCCCAVLFPIVWSIRHLRQAAAADGKAGDTLRKLTLFRQFYLLVVAYIYFTRIVIFLVQATLPYDLLWLQALFDEGATFLFYCVTGAKFRPADANPYLAVNTQERDAAELEEFGLDDYEDDFGEDDEKGVDEGERRDQGGIEMREG---GRRQGGGGGILRPM-GGQSTIVSV 514
            +LLL  L RVAD M+QNFHY DET+P+FQLETFGFRPGGVMELNFNHF+VKVPE  +  TVRAGFLMHLTESETTARQD+EEA+ERL  D+ DCWLDH GP DEVIDLS PESW EK   HTVA GEEGLYSLIFVRC+P  SAVSF ++AKFYNP   GPN+LSAGEAPLPTLYF FF  Y+VAM AW+ +CRRRK+HVH IH+MM+ALL FKTLSLLFEAVRF AYQ HGLTGHADGWAVVYY+FAF+KG+MRF+VILLIGTGWSLLKPYLSD+EKKV+L VL LQV+DNTAMVVLDELSQTSPGSASWLTWRDIFHLIDI+CCCA+LFPIVWSIRHLRQAAAADGK    LRKLTLFRQFYL+VVAYIYFTRIV+FLV+ATLPYDLLWLQA FDEGATFLFY VTG KF PADANPYLAV+T ERDAAELEEFGLDDYEDD GE++E   +EG  RD GGIEMREG   GR +G      +P  GG ++IVSV
Sbjct:   21 ILLLGVLARVADGMVQNFHYEDETSPMFQLETFGFRPGGVMELNFNHFVVKVPEKTKDATVRAGFLMHLTESETTARQDLEEALERLAADQEDCWLDHRGPNDEVIDLSDPESWAEKQVQHTVAPGEEGLYSLIFVRCQPAPSAVSFKIHAKFYNP---GPNYLSAGEAPLPTLYFVFFLCYLVAMAAWVAVCRRRKEHVHRIHNMMLALLVFKTLSLLFEAVRFQAYQKHGLTGHADGWAVVYYVFAFVKGIMRFVVILLIGTGWSLLKPYLSDREKKVVLVVLALQVIDNTAMVVLDELSQTSPGSASWLTWRDIFHLIDIVCCCAILFPIVWSIRHLRQAAAADGKMEHILRKLTLFRQFYLMVVAYIYFTRIVVFLVKATLPYDLLWLQAFFDEGATFLFYTVTGWKFCPADANPYLAVDTDERDAAELEEFGLDDYEDDLGEEEEDMREEG--RDVGGIEMREGPGHGRHRG------QPKPGGWNSIVSV 505          
The following BLAST results are available for this feature:
BLAST of NO11G03070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24893.15.700e-21778.83Transmembrane receptor, eukaryota [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03070NO11G03070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03070.1NO11G03070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03070.1.cds1NO11G03070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03070.1.cds2NO11G03070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G03070.1.cds3NO11G03070.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03070.1 ID=NO11G03070.1|Name=NO11G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1921bp
ACAGCCATTACTTTGCTAACGCGCAGATCGCTCCTGCCAGAGGCCGCTTG
CGACACGGGGCACAACCCACGCGGGCATTCGCATCATCATCATCATCGCG
CGCCGAGGAGCAGAAGCCAAGGTGCTGCAATGCCACCGCCACATGCGCGG
TCCCATCGTACACTCTTCTCCCGGCTTCTTCCTCTTCCTCTTCTCCTCCT
TCTCCTTGATCTGCCTCGCGTCGCGGACGCCATGATCCAGAATTTCCATT
ACGTGGATGAGACGAATCCGATTTTCCAGCTTGAGACCTTTGGTTTCCGA
CCCGGCGGAGTAATGGAGCTGAATTTCAATCATTTTCTTGTCAAGGTCCC
CGAGGGGATGGAGCATGAAACCGTCCGCGCGGGCTTTCTCATGCACTTGA
CGGAAAGCGAAACTACCGCCCGACAGGACATTGAAGAAGCTATCGAACGC
CTCGAACGCGACGAGAGTGATTGCTGGCTAGATCACCCTGGTCCTTATGA
CGAAGTCATCGACCTCTCCTCCCCCGAGTCATGGGTCGAAAAAAATGCCC
ATCACACGGTCGCCGCAGGGGAAGAGGGTCTCTACTCCCTCATCTTCGTC
CGATGTCGCCCTCCATTGTCGGCCGTTTCGTTTAACGTGAACGCTAAATT
TTACAACCCAACCGCCAGGGGACCGAATTTCTTGTCAGCGGGTGAAGCAC
CTTTGCCCACCCTTTACTTCGCATTCTTCTCGTTGTATGTCGTGGCGATG
GTGGCGTGGTTGATGCTGTGTCGGAGGAGGAAGGACCATGTGCACCATAT
CCATCATATGATGATGGCCTTATTATTCTTCAAAACCCTATCCCTATTGT
TCGAAGCGGTGCGATTTCACGCATACCAGACGCATGGGCTGACAGGGCAT
GCGGACGGATGGGCGGTGGTTTACTATATTTTTGCGTTTATCAAGGGGGT
AATGAGGTTCATGGTCATCCTTCTGATTGGGACCGGATGGAGCTTACTCA
AACCGTACCTCTCGGATAAGGAGAAGAAAGTGATTTTGGCAGTGCTGGTG
CTGCAAGTGCTCGATAACACGGCGATGGTGGTGCTGGACGAGCTGTCGCA
AACGAGCCCGGGGTCGGCATCGTGGCTGACATGGCGGGACATCTTCCACC
TCATCGACATCCTGTGTTGTTGCGCCGTGCTTTTCCCCATTGTTTGGTCG
ATCCGCCACCTTCGGCAAGCGGCCGCGGCCGACGGGAAGGCAGGCGATAC
CCTGAGGAAACTTACTTTATTCCGTCAGTTCTACCTGCTGGTGGTTGCGT
ACATCTACTTCACGCGGATCGTGATTTTCCTAGTGCAGGCCACCTTGCCG
TACGATTTGCTGTGGCTGCAGGCACTTTTCGATGAGGGGGCGACGTTCTT
ATTTTACTGTGTGACAGGAGCCAAGTTCAGGCCAGCGGATGCGAACCCTT
ATCTGGCCGTAAATACACAGGAGAGGGACGCTGCGGAGCTGGAGGAATTT
GGGCTGGATGACTATGAGGATGATTTTGGGGAGGATGACGAGAAGGGGGT
CGACGAAGGGGAGAGGAGGGATCAGGGTGGGATAGAGATGAGGGAGGGAG
GGAGGAGGCAGGGCGGGGGTGGGGGTATCTTGAGACCGATGGGGGGGCAG
AGCACAATAGTTTCTGTCTGAGGGGAGAAATGGAAGGAGAGAAGGGATGA
GGGAGAAGGGAGGGAGAGAAAAGTGTGACGAAAGTTTCTTGTTGTAAGAT
AAGTGAAAAGAAGGGAGATTGAGAGTGGGTAGACTGACAAGCTGCAGGAT
CGGGGAAGAAGAGGACCGAGAGCCATAGATTTTGACTCCGCCACAGCAGG
ACGGGATGAAACCATAAATTTTAAATTGAACAAGAGGGCCCAAATAGAAT
TGAGTTGACTAATAATAGAGG
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protein sequence of NO11G03070.1

>NO11G03070.1-protein ID=NO11G03070.1-protein|Name=NO11G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MPPPHARSHRTLFSRLLPLPLLLLLLDLPRVADAMIQNFHYVDETNPIFQ
LETFGFRPGGVMELNFNHFLVKVPEGMEHETVRAGFLMHLTESETTARQD
IEEAIERLERDESDCWLDHPGPYDEVIDLSSPESWVEKNAHHTVAAGEEG
LYSLIFVRCRPPLSAVSFNVNAKFYNPTARGPNFLSAGEAPLPTLYFAFF
SLYVVAMVAWLMLCRRRKDHVHHIHHMMMALLFFKTLSLLFEAVRFHAYQ
THGLTGHADGWAVVYYIFAFIKGVMRFMVILLIGTGWSLLKPYLSDKEKK
VILAVLVLQVLDNTAMVVLDELSQTSPGSASWLTWRDIFHLIDILCCCAV
LFPIVWSIRHLRQAAAADGKAGDTLRKLTLFRQFYLLVVAYIYFTRIVIF
LVQATLPYDLLWLQALFDEGATFLFYCVTGAKFRPADANPYLAVNTQERD
AAELEEFGLDDYEDDFGEDDEKGVDEGERRDQGGIEMREGGRRQGGGGGI
LRPMGGQSTIVSV*
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mRNA from alignment at chr11:961814..964109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03070.1 ID=NO11G03070.1|Name=NO11G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2296bp|location=Sequence derived from alignment at chr11:961814..964109- (Nannochloropsis oceanica)
ACAGCCATTACTTTGCTAACGCGCAGATCGCTCCTGCCAGAGGCCGCTTG CGACACGGGGCACAACCCACGCGGGCATTCGCATCATCATCATCATCGCG CGCCGAGGAGCAGAAGCCAAGGTGCTGCAATGCCACCGCCACATGCGCGG TCCCATCGTACACTCTTCTCCCGGCTTCTTCCTCTTCCTCTTCTCCTCCT TCTCCTTGATCTGCCTCGCGTCGCGGACGCCATGATCCAGAATTTCCATT ACGTGGATGAGACGAATCCGATTTTCCAGCTTGAGACCTTTGGTTTCCGA CCCGGCGGAGGTGAGTTAAGAGTGCAGGTGGTTCGGAGTAGTGGATGGTT GTAATGTCGACTACGATGTATGCAGAGTGTGCATCTCGCTATATGGACGC TGGCTGTGTGGCGGGGGACTGCAATGTCATCCTTGTGGAAAGCAAATGCA CAACCCGCCAAGTCTCACCCCACCCCCTCGCTTTCTTCCACCCTATCGCA ATCCCTACTCTACGAATTAGTAATGGAGCTGAATTTCAATCATTTTCTTG TCAAGGTCCCCGAGGGGATGGAGCATGAAACCGTCCGCGCGGGCTTTCTC ATGCACTTGACGGAAAGCGAAACTACCGCCCGACAGGACATTGAAGAAGC TATCGAACGCCTCGAACGCGACGAGAGTGATTGCTGGCTAGATCACCCTG GTCCTTATGACGAAGTCATCGACCTCTCCTCCCCCGAGTCATGGGTCGAA AAAAATGCCCATCACACGGTCGCCGCAGGGGAAGAGGGTCTCTACTCCCT CATCTTCGTCCGATGTCGCCCTCCATTGTCGGCCGTTTCGTTTAACGTGA ACGCTAAATTTTACAACCCAACCGCCAGGGGACCGAATTTCTTGTCAGCG GGTGAAGCACCTTTGCCCACCCTTTACTTCGCATTCTTCTCGTTGTATGT CGTGGCGATGGTGGCGTGGTTGATGCTGTGTCGGAGGAGGAAGGACCATG TGCACCATATCCATCATATGATGATGGCCTTATTATTCTTCAAAACCCTA TCCCTATTGTTCGAAGCGGTGCGATTTCACGCATACCAGACGCATGGGCT GACAGGGCATGCGGACGGATGGGCGGTGGTTTACTATATTTTTGCGTTTA TCAAGGGGGTAATGAGGTTCATGGTCATCCTTCTGATTGGGACCGGATGG AGCTTACTCAAACCGTACCTCTCGGATAAGGAGAAGAAAGTGATTTTGGC AGTGCTGGTGCTGCAAGTGCTCGATAACACGGCGATGGTGGTGCTGGACG AGCTGTCGCAAACGAGCCCGGGGTCGGCATCGTGGCTGGTGAGAAGGGAG GGAGAAAGGGAGGGAGGGGGAGGGGCATGTGCCTTGTTACCTTTCCAAAT TTTATATTTCCTTTTCCTAATCATTCCCCCTCTCCCTCCCTTCCTTCCTC CCTCCCTCTCTCCCCCTCTCCCTCCTTCCTTCCTCCCTTTTCTCCCTCTT AAGACATGGCGGGACATCTTCCACCTCATCGACATCCTGTGTTGTTGCGC CGTGCTTTTCCCCATTGTTTGGTCGATCCGCCACCTTCGGCAAGCGGCCG CGGCCGACGGGAAGGCAGGCGATACCCTGAGGAAACTTACTTTATTCCGT CAGTTCTACCTGCTGGTGGTTGCGTACATCTACTTCACGCGGATCGTGAT TTTCCTAGTGCAGGCCACCTTGCCGTACGATTTGCTGTGGCTGCAGGCAC TTTTCGATGAGGGGGCGACGTTCTTATTTTACTGTGTGACAGGAGCCAAG TTCAGGCCAGCGGATGCGAACCCTTATCTGGCCGTAAATACACAGGAGAG GGACGCTGCGGAGCTGGAGGAATTTGGGCTGGATGACTATGAGGATGATT TTGGGGAGGATGACGAGAAGGGGGTCGACGAAGGGGAGAGGAGGGATCAG GGTGGGATAGAGATGAGGGAGGGAGGGAGGAGGCAGGGCGGGGGTGGGGG TATCTTGAGACCGATGGGGGGGCAGAGCACAATAGTTTCTGTCTGAGGGG AGAAATGGAAGGAGAGAAGGGATGAGGGAGAAGGGAGGGAGAGAAAAGTG TGACGAAAGTTTCTTGTTGTAAGATAAGTGAAAAGAAGGGAGATTGAGAG TGGGTAGACTGACAAGCTGCAGGATCGGGGAAGAAGAGGACCGAGAGCCA TAGATTTTGACTCCGCCACAGCAGGACGGGATGAAACCATAAATTTTAAA TTGAACAAGAGGGCCCAAATAGAATTGAGTTGACTAATAATAGAGG
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Coding sequence (CDS) from alignment at chr11:961814..964109-

>NO11G03070.1 ID=NO11G03070.1|Name=NO11G03070.1|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr11:961814..964109- (Nannochloropsis oceanica)
ATGCCACCGCCACATGCGCGGTCCCATCGTACACTCTTCTCCCGGCTTCT
TCCTCTTCCTCTTCTCCTCCTTCTCCTTGATCTGCCTCGCGTCGCGGACG
CCATGATCCAGAATTTCCATTACGTGGATGAGACGAATCCGATTTTCCAG
CTTGAGACCTTTGGTTTCCGACCCGGCGGAGTAATGGAGCTGAATTTCAA
TCATTTTCTTGTCAAGGTCCCCGAGGGGATGGAGCATGAAACCGTCCGCG
CGGGCTTTCTCATGCACTTGACGGAAAGCGAAACTACCGCCCGACAGGAC
ATTGAAGAAGCTATCGAACGCCTCGAACGCGACGAGAGTGATTGCTGGCT
AGATCACCCTGGTCCTTATGACGAAGTCATCGACCTCTCCTCCCCCGAGT
CATGGGTCGAAAAAAATGCCCATCACACGGTCGCCGCAGGGGAAGAGGGT
CTCTACTCCCTCATCTTCGTCCGATGTCGCCCTCCATTGTCGGCCGTTTC
GTTTAACGTGAACGCTAAATTTTACAACCCAACCGCCAGGGGACCGAATT
TCTTGTCAGCGGGTGAAGCACCTTTGCCCACCCTTTACTTCGCATTCTTC
TCGTTGTATGTCGTGGCGATGGTGGCGTGGTTGATGCTGTGTCGGAGGAG
GAAGGACCATGTGCACCATATCCATCATATGATGATGGCCTTATTATTCT
TCAAAACCCTATCCCTATTGTTCGAAGCGGTGCGATTTCACGCATACCAG
ACGCATGGGCTGACAGGGCATGCGGACGGATGGGCGGTGGTTTACTATAT
TTTTGCGTTTATCAAGGGGGTAATGAGGTTCATGGTCATCCTTCTGATTG
GGACCGGATGGAGCTTACTCAAACCGTACCTCTCGGATAAGGAGAAGAAA
GTGATTTTGGCAGTGCTGGTGCTGCAAGTGCTCGATAACACGGCGATGGT
GGTGCTGGACGAGCTGTCGCAAACGAGCCCGGGGTCGGCATCGTGGCTGA
CATGGCGGGACATCTTCCACCTCATCGACATCCTGTGTTGTTGCGCCGTG
CTTTTCCCCATTGTTTGGTCGATCCGCCACCTTCGGCAAGCGGCCGCGGC
CGACGGGAAGGCAGGCGATACCCTGAGGAAACTTACTTTATTCCGTCAGT
TCTACCTGCTGGTGGTTGCGTACATCTACTTCACGCGGATCGTGATTTTC
CTAGTGCAGGCCACCTTGCCGTACGATTTGCTGTGGCTGCAGGCACTTTT
CGATGAGGGGGCGACGTTCTTATTTTACTGTGTGACAGGAGCCAAGTTCA
GGCCAGCGGATGCGAACCCTTATCTGGCCGTAAATACACAGGAGAGGGAC
GCTGCGGAGCTGGAGGAATTTGGGCTGGATGACTATGAGGATGATTTTGG
GGAGGATGACGAGAAGGGGGTCGACGAAGGGGAGAGGAGGGATCAGGGTG
GGATAGAGATGAGGGAGGGAGGGAGGAGGCAGGGCGGGGGTGGGGGTATC
TTGAGACCGATGGGGGGGCAGAGCACAATAGTTTCTGTCTGA
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Synonyms
Publications