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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:961814..964109 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G03070.1 vs.
Match: EWM24893.1 (Transmembrane receptor, eukaryota [Nannochloropsis gaditana]) HSP 1 Score: 763.1 bits (1969), Expect = 5.700e-217 Identity = 391/496 (78.83%), Postives = 430/496 (86.69%), Query Frame = 0
Query: 22 LLLLLDLPRVADAMIQNFHYVDETNPIFQLETFGFRPGGVMELNFNHFLVKVPEGMEHETVRAGFLMHLTESETTARQDIEEAIERLERDESDCWLDHPGPYDEVIDLSSPESWVEKNAHHTVAAGEEGLYSLIFVRCRPPLSAVSFNVNAKFYNPTARGPNFLSAGEAPLPTLYFAFFSLYVVAMVAWLMLCRRRKDHVHHIHHMMMALLFFKTLSLLFEAVRFHAYQTHGLTGHADGWAVVYYIFAFIKGVMRFMVILLIGTGWSLLKPYLSDKEKKVILAVLVLQVLDNTAMVVLDELSQTSPGSASWLTWRDIFHLIDILCCCAVLFPIVWSIRHLRQAAAADGKAGDTLRKLTLFRQFYLLVVAYIYFTRIVIFLVQATLPYDLLWLQALFDEGATFLFYCVTGAKFRPADANPYLAVNTQERDAAELEEFGLDDYEDDFGEDDEKGVDEGERRDQGGIEMREG---GRRQGGGGGILRPM-GGQSTIVSV 514
+LLL L RVAD M+QNFHY DET+P+FQLETFGFRPGGVMELNFNHF+VKVPE + TVRAGFLMHLTESETTARQD+EEA+ERL D+ DCWLDH GP DEVIDLS PESW EK HTVA GEEGLYSLIFVRC+P SAVSF ++AKFYNP GPN+LSAGEAPLPTLYF FF Y+VAM AW+ +CRRRK+HVH IH+MM+ALL FKTLSLLFEAVRF AYQ HGLTGHADGWAVVYY+FAF+KG+MRF+VILLIGTGWSLLKPYLSD+EKKV+L VL LQV+DNTAMVVLDELSQTSPGSASWLTWRDIFHLIDI+CCCA+LFPIVWSIRHLRQAAAADGK LRKLTLFRQFYL+VVAYIYFTRIV+FLV+ATLPYDLLWLQA FDEGATFLFY VTG KF PADANPYLAV+T ERDAAELEEFGLDDYEDD GE++E +EG RD GGIEMREG GR +G +P GG ++IVSV
Sbjct: 21 ILLLGVLARVADGMVQNFHYEDETSPMFQLETFGFRPGGVMELNFNHFVVKVPEKTKDATVRAGFLMHLTESETTARQDLEEALERLAADQEDCWLDHRGPNDEVIDLSDPESWAEKQVQHTVAPGEEGLYSLIFVRCQPAPSAVSFKIHAKFYNP---GPNYLSAGEAPLPTLYFVFFLCYLVAMAAWVAVCRRRKEHVHRIHNMMLALLVFKTLSLLFEAVRFQAYQKHGLTGHADGWAVVYYVFAFVKGIMRFVVILLIGTGWSLLKPYLSDREKKVVLVVLALQVIDNTAMVVLDELSQTSPGSASWLTWRDIFHLIDIVCCCAILFPIVWSIRHLRQAAAADGKMEHILRKLTLFRQFYLMVVAYIYFTRIVVFLVKATLPYDLLWLQAFFDEGATFLFYTVTGWKFCPADANPYLAVDTDERDAAELEEFGLDDYEDDLGEEEEDMREEG--RDVGGIEMREGPGHGRHRG------QPKPGGWNSIVSV 505
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G03070.1 ID=NO11G03070.1|Name=NO11G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1921bp ACAGCCATTACTTTGCTAACGCGCAGATCGCTCCTGCCAGAGGCCGCTTG CGACACGGGGCACAACCCACGCGGGCATTCGCATCATCATCATCATCGCG CGCCGAGGAGCAGAAGCCAAGGTGCTGCAATGCCACCGCCACATGCGCGG TCCCATCGTACACTCTTCTCCCGGCTTCTTCCTCTTCCTCTTCTCCTCCT TCTCCTTGATCTGCCTCGCGTCGCGGACGCCATGATCCAGAATTTCCATT ACGTGGATGAGACGAATCCGATTTTCCAGCTTGAGACCTTTGGTTTCCGA CCCGGCGGAGTAATGGAGCTGAATTTCAATCATTTTCTTGTCAAGGTCCC CGAGGGGATGGAGCATGAAACCGTCCGCGCGGGCTTTCTCATGCACTTGA CGGAAAGCGAAACTACCGCCCGACAGGACATTGAAGAAGCTATCGAACGC CTCGAACGCGACGAGAGTGATTGCTGGCTAGATCACCCTGGTCCTTATGA CGAAGTCATCGACCTCTCCTCCCCCGAGTCATGGGTCGAAAAAAATGCCC ATCACACGGTCGCCGCAGGGGAAGAGGGTCTCTACTCCCTCATCTTCGTC CGATGTCGCCCTCCATTGTCGGCCGTTTCGTTTAACGTGAACGCTAAATT TTACAACCCAACCGCCAGGGGACCGAATTTCTTGTCAGCGGGTGAAGCAC CTTTGCCCACCCTTTACTTCGCATTCTTCTCGTTGTATGTCGTGGCGATG GTGGCGTGGTTGATGCTGTGTCGGAGGAGGAAGGACCATGTGCACCATAT CCATCATATGATGATGGCCTTATTATTCTTCAAAACCCTATCCCTATTGT TCGAAGCGGTGCGATTTCACGCATACCAGACGCATGGGCTGACAGGGCAT GCGGACGGATGGGCGGTGGTTTACTATATTTTTGCGTTTATCAAGGGGGT AATGAGGTTCATGGTCATCCTTCTGATTGGGACCGGATGGAGCTTACTCA AACCGTACCTCTCGGATAAGGAGAAGAAAGTGATTTTGGCAGTGCTGGTG CTGCAAGTGCTCGATAACACGGCGATGGTGGTGCTGGACGAGCTGTCGCA AACGAGCCCGGGGTCGGCATCGTGGCTGACATGGCGGGACATCTTCCACC TCATCGACATCCTGTGTTGTTGCGCCGTGCTTTTCCCCATTGTTTGGTCG ATCCGCCACCTTCGGCAAGCGGCCGCGGCCGACGGGAAGGCAGGCGATAC CCTGAGGAAACTTACTTTATTCCGTCAGTTCTACCTGCTGGTGGTTGCGT ACATCTACTTCACGCGGATCGTGATTTTCCTAGTGCAGGCCACCTTGCCG TACGATTTGCTGTGGCTGCAGGCACTTTTCGATGAGGGGGCGACGTTCTT ATTTTACTGTGTGACAGGAGCCAAGTTCAGGCCAGCGGATGCGAACCCTT ATCTGGCCGTAAATACACAGGAGAGGGACGCTGCGGAGCTGGAGGAATTT GGGCTGGATGACTATGAGGATGATTTTGGGGAGGATGACGAGAAGGGGGT CGACGAAGGGGAGAGGAGGGATCAGGGTGGGATAGAGATGAGGGAGGGAG GGAGGAGGCAGGGCGGGGGTGGGGGTATCTTGAGACCGATGGGGGGGCAG AGCACAATAGTTTCTGTCTGAGGGGAGAAATGGAAGGAGAGAAGGGATGA GGGAGAAGGGAGGGAGAGAAAAGTGTGACGAAAGTTTCTTGTTGTAAGAT AAGTGAAAAGAAGGGAGATTGAGAGTGGGTAGACTGACAAGCTGCAGGAT CGGGGAAGAAGAGGACCGAGAGCCATAGATTTTGACTCCGCCACAGCAGG ACGGGATGAAACCATAAATTTTAAATTGAACAAGAGGGCCCAAATAGAAT TGAGTTGACTAATAATAGAGG back to topprotein sequence of NO11G03070.1 >NO11G03070.1-protein ID=NO11G03070.1-protein|Name=NO11G03070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp MPPPHARSHRTLFSRLLPLPLLLLLLDLPRVADAMIQNFHYVDETNPIFQ LETFGFRPGGVMELNFNHFLVKVPEGMEHETVRAGFLMHLTESETTARQD IEEAIERLERDESDCWLDHPGPYDEVIDLSSPESWVEKNAHHTVAAGEEG LYSLIFVRCRPPLSAVSFNVNAKFYNPTARGPNFLSAGEAPLPTLYFAFF SLYVVAMVAWLMLCRRRKDHVHHIHHMMMALLFFKTLSLLFEAVRFHAYQ THGLTGHADGWAVVYYIFAFIKGVMRFMVILLIGTGWSLLKPYLSDKEKK VILAVLVLQVLDNTAMVVLDELSQTSPGSASWLTWRDIFHLIDILCCCAV LFPIVWSIRHLRQAAAADGKAGDTLRKLTLFRQFYLLVVAYIYFTRIVIF LVQATLPYDLLWLQALFDEGATFLFYCVTGAKFRPADANPYLAVNTQERD AAELEEFGLDDYEDDFGEDDEKGVDEGERRDQGGIEMREGGRRQGGGGGI LRPMGGQSTIVSV* back to topmRNA from alignment at chr11:961814..964109- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G03070.1 ID=NO11G03070.1|Name=NO11G03070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2296bp|location=Sequence derived from alignment at chr11:961814..964109- (Nannochloropsis oceanica) ACAGCCATTACTTTGCTAACGCGCAGATCGCTCCTGCCAGAGGCCGCTTG
CGACACGGGGCACAACCCACGCGGGCATTCGCATCATCATCATCATCGCG
CGCCGAGGAGCAGAAGCCAAGGTGCTGCAATGCCACCGCCACATGCGCGG
TCCCATCGTACACTCTTCTCCCGGCTTCTTCCTCTTCCTCTTCTCCTCCT
TCTCCTTGATCTGCCTCGCGTCGCGGACGCCATGATCCAGAATTTCCATT
ACGTGGATGAGACGAATCCGATTTTCCAGCTTGAGACCTTTGGTTTCCGA
CCCGGCGGAGGTGAGTTAAGAGTGCAGGTGGTTCGGAGTAGTGGATGGTT
GTAATGTCGACTACGATGTATGCAGAGTGTGCATCTCGCTATATGGACGC
TGGCTGTGTGGCGGGGGACTGCAATGTCATCCTTGTGGAAAGCAAATGCA
CAACCCGCCAAGTCTCACCCCACCCCCTCGCTTTCTTCCACCCTATCGCA
ATCCCTACTCTACGAATTAGTAATGGAGCTGAATTTCAATCATTTTCTTG
TCAAGGTCCCCGAGGGGATGGAGCATGAAACCGTCCGCGCGGGCTTTCTC
ATGCACTTGACGGAAAGCGAAACTACCGCCCGACAGGACATTGAAGAAGC
TATCGAACGCCTCGAACGCGACGAGAGTGATTGCTGGCTAGATCACCCTG
GTCCTTATGACGAAGTCATCGACCTCTCCTCCCCCGAGTCATGGGTCGAA
AAAAATGCCCATCACACGGTCGCCGCAGGGGAAGAGGGTCTCTACTCCCT
CATCTTCGTCCGATGTCGCCCTCCATTGTCGGCCGTTTCGTTTAACGTGA
ACGCTAAATTTTACAACCCAACCGCCAGGGGACCGAATTTCTTGTCAGCG
GGTGAAGCACCTTTGCCCACCCTTTACTTCGCATTCTTCTCGTTGTATGT
CGTGGCGATGGTGGCGTGGTTGATGCTGTGTCGGAGGAGGAAGGACCATG
TGCACCATATCCATCATATGATGATGGCCTTATTATTCTTCAAAACCCTA
TCCCTATTGTTCGAAGCGGTGCGATTTCACGCATACCAGACGCATGGGCT
GACAGGGCATGCGGACGGATGGGCGGTGGTTTACTATATTTTTGCGTTTA
TCAAGGGGGTAATGAGGTTCATGGTCATCCTTCTGATTGGGACCGGATGG
AGCTTACTCAAACCGTACCTCTCGGATAAGGAGAAGAAAGTGATTTTGGC
AGTGCTGGTGCTGCAAGTGCTCGATAACACGGCGATGGTGGTGCTGGACG
AGCTGTCGCAAACGAGCCCGGGGTCGGCATCGTGGCTGGTGAGAAGGGAG
GGAGAAAGGGAGGGAGGGGGAGGGGCATGTGCCTTGTTACCTTTCCAAAT
TTTATATTTCCTTTTCCTAATCATTCCCCCTCTCCCTCCCTTCCTTCCTC
CCTCCCTCTCTCCCCCTCTCCCTCCTTCCTTCCTCCCTTTTCTCCCTCTT
AAGACATGGCGGGACATCTTCCACCTCATCGACATCCTGTGTTGTTGCGC
CGTGCTTTTCCCCATTGTTTGGTCGATCCGCCACCTTCGGCAAGCGGCCG
CGGCCGACGGGAAGGCAGGCGATACCCTGAGGAAACTTACTTTATTCCGT
CAGTTCTACCTGCTGGTGGTTGCGTACATCTACTTCACGCGGATCGTGAT
TTTCCTAGTGCAGGCCACCTTGCCGTACGATTTGCTGTGGCTGCAGGCAC
TTTTCGATGAGGGGGCGACGTTCTTATTTTACTGTGTGACAGGAGCCAAG
TTCAGGCCAGCGGATGCGAACCCTTATCTGGCCGTAAATACACAGGAGAG
GGACGCTGCGGAGCTGGAGGAATTTGGGCTGGATGACTATGAGGATGATT
TTGGGGAGGATGACGAGAAGGGGGTCGACGAAGGGGAGAGGAGGGATCAG
GGTGGGATAGAGATGAGGGAGGGAGGGAGGAGGCAGGGCGGGGGTGGGGG
TATCTTGAGACCGATGGGGGGGCAGAGCACAATAGTTTCTGTCTGAGGGG
AGAAATGGAAGGAGAGAAGGGATGAGGGAGAAGGGAGGGAGAGAAAAGTG
TGACGAAAGTTTCTTGTTGTAAGATAAGTGAAAAGAAGGGAGATTGAGAG
TGGGTAGACTGACAAGCTGCAGGATCGGGGAAGAAGAGGACCGAGAGCCA
TAGATTTTGACTCCGCCACAGCAGGACGGGATGAAACCATAAATTTTAAA
TTGAACAAGAGGGCCCAAATAGAATTGAGTTGACTAATAATAGAGG back to topCoding sequence (CDS) from alignment at chr11:961814..964109- >NO11G03070.1 ID=NO11G03070.1|Name=NO11G03070.1|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr11:961814..964109- (Nannochloropsis oceanica) ATGCCACCGCCACATGCGCGGTCCCATCGTACACTCTTCTCCCGGCTTCT TCCTCTTCCTCTTCTCCTCCTTCTCCTTGATCTGCCTCGCGTCGCGGACG CCATGATCCAGAATTTCCATTACGTGGATGAGACGAATCCGATTTTCCAG CTTGAGACCTTTGGTTTCCGACCCGGCGGAGTAATGGAGCTGAATTTCAA TCATTTTCTTGTCAAGGTCCCCGAGGGGATGGAGCATGAAACCGTCCGCG CGGGCTTTCTCATGCACTTGACGGAAAGCGAAACTACCGCCCGACAGGAC ATTGAAGAAGCTATCGAACGCCTCGAACGCGACGAGAGTGATTGCTGGCT AGATCACCCTGGTCCTTATGACGAAGTCATCGACCTCTCCTCCCCCGAGT CATGGGTCGAAAAAAATGCCCATCACACGGTCGCCGCAGGGGAAGAGGGT CTCTACTCCCTCATCTTCGTCCGATGTCGCCCTCCATTGTCGGCCGTTTC GTTTAACGTGAACGCTAAATTTTACAACCCAACCGCCAGGGGACCGAATT TCTTGTCAGCGGGTGAAGCACCTTTGCCCACCCTTTACTTCGCATTCTTC TCGTTGTATGTCGTGGCGATGGTGGCGTGGTTGATGCTGTGTCGGAGGAG GAAGGACCATGTGCACCATATCCATCATATGATGATGGCCTTATTATTCT TCAAAACCCTATCCCTATTGTTCGAAGCGGTGCGATTTCACGCATACCAG ACGCATGGGCTGACAGGGCATGCGGACGGATGGGCGGTGGTTTACTATAT TTTTGCGTTTATCAAGGGGGTAATGAGGTTCATGGTCATCCTTCTGATTG GGACCGGATGGAGCTTACTCAAACCGTACCTCTCGGATAAGGAGAAGAAA GTGATTTTGGCAGTGCTGGTGCTGCAAGTGCTCGATAACACGGCGATGGT GGTGCTGGACGAGCTGTCGCAAACGAGCCCGGGGTCGGCATCGTGGCTGA CATGGCGGGACATCTTCCACCTCATCGACATCCTGTGTTGTTGCGCCGTG CTTTTCCCCATTGTTTGGTCGATCCGCCACCTTCGGCAAGCGGCCGCGGC CGACGGGAAGGCAGGCGATACCCTGAGGAAACTTACTTTATTCCGTCAGT TCTACCTGCTGGTGGTTGCGTACATCTACTTCACGCGGATCGTGATTTTC CTAGTGCAGGCCACCTTGCCGTACGATTTGCTGTGGCTGCAGGCACTTTT CGATGAGGGGGCGACGTTCTTATTTTACTGTGTGACAGGAGCCAAGTTCA GGCCAGCGGATGCGAACCCTTATCTGGCCGTAAATACACAGGAGAGGGAC GCTGCGGAGCTGGAGGAATTTGGGCTGGATGACTATGAGGATGATTTTGG GGAGGATGACGAGAAGGGGGTCGACGAAGGGGAGAGGAGGGATCAGGGTG GGATAGAGATGAGGGAGGGAGGGAGGAGGCAGGGCGGGGGTGGGGGTATC TTGAGACCGATGGGGGGGCAGAGCACAATAGTTTCTGTCTGA back to top
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