NO11G02990.2, NO11G02990.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02990.2
Unique NameNO11G02990.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3113
Alignment locationchr11:938032..941348 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:938032..941348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02990.2 vs.
Match: EWM24917.1 (fad nad -binding domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 486.1 bits (1250), Expect = 9.400e-134
Identity = 236/318 (74.21%), Postives = 274/318 (86.16%), Query Frame = 0 
Query:   15 EDRHFIIVGAGPVGLLAAILLVQEIDALQVTIYESRDGLITDLQESYPVGVNPRGARALDRARPDMAIALRKRGVMVDAWKIYAGRRMIAEVPSGLVVGTTRSMINEMLYEEVRKHFRGRIEIKWGHRLKSLDLLERRLVFDVKQPATDPDLARTYEEVTVEGGGARMLACDGVWSEVRAFAENHVEGFKSQITPWGVQFRLLFSKPGAGALAPYLKPENHYVMSGIYVSIIEGNVWVMGLGIDDGLPAQTRDLLLATESTPTRVAALRAYVTKKAPLAAPFLTEEDLSMYFKRRSFRGAMVKVNRLNLGEWGVLLGG 333
            E+  +II+GAGPVGLLAAILLVQE  A QV+IYE+RDGL TDL ESYP+GVNPRG+RALDRARPDMAIALR R  M+DAW+IYAG RM+AEVPSGLVVGTTRS INE+LYEEV KHF+ +I+I W HRLK+LD+LER L+FDVK+P  D +LA+TYEEVTV+GGGAR+LACDGVWS VR FAE HVEGF S ++PW VQFRLLFSKPGAG L P L+P  HYVM GIY+SIIE +VWV+GLGI + LP QTR+LL AT +TP R+AALRAYVTKKAPLAAPFLT EDL +YF R++F GAMVKV++LN+GEW VLLGG
Sbjct:   12 ENNRYIIIGAGPVGLLAAILLVQEKHAAQVSIYEARDGLTTDLHESYPIGVNPRGSRALDRARPDMAIALRMRSSMIDAWRIYAGSRMVAEVPSGLVVGTTRSTINEILYEEVCKHFQEQIKILWSHRLKTLDILERSLIFDVKRPRADEELAQTYEEVTVQGGGARVLACDGVWSVVRGFAEKHVEGFTSNVSPWRVQFRLLFSKPGAGKLVPELEPRYHYVMGGIYLSIIEEDVWVLGLGIGEHLPRQTRELLTATVATPERIAALRAYVTKKAPLAAPFLTAEDLELYFTRKTFGGAMVKVSQLNIGEWAVLLGG 329
The following BLAST results are available for this feature:
BLAST of NO11G02990.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24917.19.400e-13474.21fad nad -binding domain-containing protein [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02990NO11G02990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02990.2NO11G02990.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02990.2.cds1NO11G02990.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02990.2.cds2NO11G02990.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02990.2 ID=NO11G02990.2|Name=NO11G02990.2|organism=Nannochloropsis oceanica|type=mRNA|length=3113bp
TATTTGCGGGTGTATCCTGTGTCTTGTGTGCATGAGGATGTCGCCACGAT
TTGTGAGCTCAAGAGCCGGTTTGGACACCACCAGCCTGCAAGCCCCTTCT
CACAAATCAGCAGTAAGCTTCCTGCAAGTCCATTCATTGAGCTTCTCACG
CTCTTCATCCCGTCTCCGCTCGTCCATACCCGGCACACACATCCATAGAG
GCCCGGTGCAAACACACAAACGCACGCCATGACGACGTCGGGCGAGACAA
CAGGCCAGAAGTTGCATCCCGAAGACCGGCACTTCATTATTGTGGGGGCG
GGCCCCGTGGGTCTCCTGGCCGCAATCCTTCTGGTCCAAGAGATCGACGC
CCTTCAGGTGACAATATACGAATCTCGTGATGGCCTCATTACGGATCTGC
AAGAGAGCTATCCCGTTGGCGTCAACCCTCGAGGGGCCAGGGCGTTGGAT
CGGGCTAGGCCCGACATGGCCATTGCCCTGCGCAAACGGGGCGTCATGGT
TGATGCCTGGAAGATTTATGCTGGCAGACGGATGATCGCTGAGGTACCAT
CGGGCTTGGTGGTGGGTACTACGCGGAGCATGATTAACGAGATGTTGTAT
GAGGAGGTCCGGAAGCATTTTCGAGGACGGATTGAAATCAAGTGGGGGCA
TCGCCTCAAGTCCTTGGACTTGCTCGAACGCCGCTTGGTCTTTGACGTAA
AACAGCCAGCGACGGATCCTGACCTGGCACGGACATATGAGGAAGTGACG
GTGGAGGGAGGGGGGGCAAGAATGTTGGCATGCGATGGGGTCTGGAGCGA
GGTGCGTGCGTTTGCAGAGAACCACGTGGAGGGCTTCAAGAGTCAAATCA
CTCCCTGGGGGGTTCAATTTCGACTGCTCTTTTCTAAACCTGGTGCGGGA
GCCTTGGCGCCGTACCTGAAGCCTGAGAATCACTATGTAATGAGCGGGAT
CTACGTGTCAATCATTGAGGGCAACGTGTGGGTCATGGGCTTAGGGATAG
ATGATGGTCTTCCTGCCCAAACCCGAGATCTCCTTCTCGCCACGGAATCG
ACGCCTACACGTGTGGCGGCCTTGCGGGCATATGTCACGAAGAAGGCACC
CTTGGCGGCCCCATTCTTGACGGAGGAGGATTTGAGTATGTATTTTAAGA
GGAGGAGCTTTCGCGGAGCGATGGTGAAGGTTAACCGACTTAATCTTGGG
GAGTGGGGCGTGTTGCTGGGTGGTACGTACAGAGGCGTGGGAGAACAAGA
AGGGGAAATGATGAAGAGGGGGAGGGGCAATGGATTTGATTCCATGTTTT
TTGCGTCGAGTACATGAGTAAATGTGACGTGTTTAAAAAAGGTCAGATAT
TATTTTTGTTATTTTGACTTATCCCTCTTTTGGTCGGGGCTCCTCTGTCC
CCTGATGCGGCTCATTCCATCAATACTCTTTCAGTGAAGGATTTAGGGCC
GAGGCGTCACAGACGATTCTGCACAGTGACCTTAAGAACCACTCCATCCC
CCTTGCTGACGTACTCTCCTCCGCCCTTCCCACACAACCATACGCAGACG
CCGCACACTGCGTCATTCCTCCCATCGGCGAAGGATTTAATTCCGGGGCG
GAGGATGTGGAAGTCCTCATGGATGCCATGCACCACGACCTCGACAACCC
CTTCAGCAAATACAACGAGTGGCGTCTCCCCGATTTGCACGCCCTGCATG
AACTGGCTTTCGATGTCAATCAATCGAATTTTGGAAATTTAGGCCCGGAA
AAGATAAGTCGGTTGATAACTTCGATGATGGTAGGGCTTGCCAAGAGCTG
CGGGGTGTTCAGGACAACGTGGGAAGACATGAGTTTTGGCGCGGATGCCT
TCCCGCCCAAATCGTACCTGGAAATCGGGAGTGTGTGGCGGTGGCAGCGC
TTGTTTCTTCTACCGCTGGCAAGGATAATTGTGTGGCCTATGTATTTATT
GGTTTGGGTGGTGATGCGGCCGGTACAATTGATGTGGACGGTGATGACGG
GCCCTAATCGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAG
AGAGGAAGAGGAGGAGACGGGACTCAGAAGTCGAAGCGGGCGTGACGATA
ACGACAAAGCACAGCGGAATTTAACGGCAAGAATTTATACAAGTAACAAT
GGCGCTGCAAAAATTGAAATATTATCGACAACACGACCCATGCACGCGCA
AGACTTAAAGAAACTATATATCAAGCTGCACTTATCCACTCATTTGAACA
AATACACGGGACTATCTTCAGTTTTCTTCTTCTTTGCGTCCCATTGGCAT
ATGCCACGGGCTGCTTGTCGGTCCAGGGCTTGCTGTACACTAGCTATGTC
CTCGTCCTTCTCTTTGAATCATTAAACTCTACCTCCCCTCTTACACCCTC
CACTTACAAAATATCTTCCCAGTAATCTTCCGCTTCCTCGACCCCTCCTC
CTTCCTCTTCCTCCGCTGCCACCTTCTGCTTCCCTCCGCCCCCTCCTTTA
CCCTCCCCATCCCCCTCCACCTCTACCCTCCTAATCTGCATCCTGAACAA
CTCTGCTATCTGCGCCGCAGTCGTTGCGTCCTCCACCCCCTTATCCTCCC
TCACCTTCAAAAAGCGCGGAAACCTCAAACTCATCCCCTTCTGCTTGTCT
ACCAACCCCACCCCTGCCTTATGCACCGGGCTTATGGTCAGTTCCGCCCC
CCGTATCTCCCAAACCTGACAGGGGTCGAACCATATCGGGCACGTCTCCC
CTGTCCTGACGTAACTCTTAGGCGCGTCAATGATCCTCCCCTCACTCTGA
TAAAATTTGGTGGTGTCGGCGTACATGGCATCGGTTAATCCCGACATGCA
CCGACAGAGGGACTGGAGCTCTTCGGTCTCGGGGTTGTAGCAGGCGAGGA
GGATGGGAGAGAACCAACCGGCCTTGCGGCCGTTGCCGTACCTGTAGGAA
AGGGAGGGAGGGAGGGAGGGAAAAAGAGGATCGGACGACAAGACAAAGAA
GAAAGAAGGGCATGCGCCTAGACTGGAAGAAAAGCGCAGGGACGGGGGAA
GAGAGGGATGGAAGGAGAAATGGAGGGAGGGATGGAGGGAGGGATGGAGG
GAGGGATGGAGGG
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protein sequence of NO11G02990.2

>NO11G02990.2-protein ID=NO11G02990.2-protein|Name=NO11G02990.2|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MTTSGETTGQKLHPEDRHFIIVGAGPVGLLAAILLVQEIDALQVTIYESR
DGLITDLQESYPVGVNPRGARALDRARPDMAIALRKRGVMVDAWKIYAGR
RMIAEVPSGLVVGTTRSMINEMLYEEVRKHFRGRIEIKWGHRLKSLDLLE
RRLVFDVKQPATDPDLARTYEEVTVEGGGARMLACDGVWSEVRAFAENHV
EGFKSQITPWGVQFRLLFSKPGAGALAPYLKPENHYVMSGIYVSIIEGNV
WVMGLGIDDGLPAQTRDLLLATESTPTRVAALRAYVTKKAPLAAPFLTEE
DLSMYFKRRSFRGAMVKVNRLNLGEWGVLLGGTYRGVGEQEGEMMKRGRG
NGFDSMFFASST*
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mRNA from alignment at chr11:938032..941348+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02990.2 ID=NO11G02990.2|Name=NO11G02990.2|organism=Nannochloropsis oceanica|type=mRNA|length=3317bp|location=Sequence derived from alignment at chr11:938032..941348+ (Nannochloropsis oceanica)
TATTTGCGGGTGTATCCTGTGTCTTGTGTGCATGAGGATGTCGCCACGAT
TTGTGAGCTCAAGAGCCGGTTTGGACACCACCAGCCTGCAAGCCCCTTCT
CACAAATCAGCAGTAAGCTTCCTGCAAGTCCATTCATTGAGCTTCTCACG
CTCTTCATCCCGTCTCCGCTCGTCCATACCCGGCACACACATCCATAGAG
GCCCGGTGCAAACACACAAACGCACGCCATGACGACGTCGGGCGAGACAA
CAGGCCAGAAGTTGCATCCCGAAGACCGGCACTTCATTATTGTGGGGGCG
GGCCCCGTGGGTCTCCTGGCCGCAATCCTTCTGGTCCAAGAGATCGACGC
CCTTCAGGTAAAACACACACGCCTCAAGGATGGCATCACCGTACACTCTT
GTCCAGAAGATAGAGGTGGTATGTCGTTGTTGATGTTAAGCCTTACTCGC
CGAAGAGAGTTTGCATCAACATGGCCCGCCCTCCCGCCCTCCTTGCACCC
TCCTTCAAACCCTTCCTTACGCACATGTATTCCCGCATCACCACATCACA
CACCAAAATAGGTGACAATATACGAATCTCGTGATGGCCTCATTACGGAT
CTGCAAGAGAGCTATCCCGTTGGCGTCAACCCTCGAGGGGCCAGGGCGTT
GGATCGGGCTAGGCCCGACATGGCCATTGCCCTGCGCAAACGGGGCGTCA
TGGTTGATGCCTGGAAGATTTATGCTGGCAGACGGATGATCGCTGAGGTA
CCATCGGGCTTGGTGGTGGGTACTACGCGGAGCATGATTAACGAGATGTT
GTATGAGGAGGTCCGGAAGCATTTTCGAGGACGGATTGAAATCAAGTGGG
GGCATCGCCTCAAGTCCTTGGACTTGCTCGAACGCCGCTTGGTCTTTGAC
GTAAAACAGCCAGCGACGGATCCTGACCTGGCACGGACATATGAGGAAGT
GACGGTGGAGGGAGGGGGGGCAAGAATGTTGGCATGCGATGGGGTCTGGA
GCGAGGTGCGTGCGTTTGCAGAGAACCACGTGGAGGGCTTCAAGAGTCAA
ATCACTCCCTGGGGGGTTCAATTTCGACTGCTCTTTTCTAAACCTGGTGC
GGGAGCCTTGGCGCCGTACCTGAAGCCTGAGAATCACTATGTAATGAGCG
GGATCTACGTGTCAATCATTGAGGGCAACGTGTGGGTCATGGGCTTAGGG
ATAGATGATGGTCTTCCTGCCCAAACCCGAGATCTCCTTCTCGCCACGGA
ATCGACGCCTACACGTGTGGCGGCCTTGCGGGCATATGTCACGAAGAAGG
CACCCTTGGCGGCCCCATTCTTGACGGAGGAGGATTTGAGTATGTATTTT
AAGAGGAGGAGCTTTCGCGGAGCGATGGTGAAGGTTAACCGACTTAATCT
TGGGGAGTGGGGCGTGTTGCTGGGTGGTACGTACAGAGGCGTGGGAGAAC
AAGAAGGGGAAATGATGAAGAGGGGGAGGGGCAATGGATTTGATTCCATG
TTTTTTGCGTCGAGTACATGAGTAAATGTGACGTGTTTAAAAAAGGTCAG
ATATTATTTTTGTTATTTTGACTTATCCCTCTTTTGGTCGGGGCTCCTCT
GTCCCCTGATGCGGCTCATTCCATCAATACTCTTTCAGTGAAGGATTTAG
GGCCGAGGCGTCACAGACGATTCTGCACAGTGACCTTAAGAACCACTCCA
TCCCCCTTGCTGACGTACTCTCCTCCGCCCTTCCCACACAACCATACGCA
GACGCCGCACACTGCGTCATTCCTCCCATCGGCGAAGGATTTAATTCCGG
GGCGGAGGATGTGGAAGTCCTCATGGATGCCATGCACCACGACCTCGACA
ACCCCTTCAGCAAATACAACGAGTGGCGTCTCCCCGATTTGCACGCCCTG
CATGAACTGGCTTTCGATGTCAATCAATCGAATTTTGGAAATTTAGGCCC
GGAAAAGATAAGTCGGTTGATAACTTCGATGATGGTAGGGCTTGCCAAGA
GCTGCGGGGTGTTCAGGACAACGTGGGAAGACATGAGTTTTGGCGCGGAT
GCCTTCCCGCCCAAATCGTACCTGGAAATCGGGAGTGTGTGGCGGTGGCA
GCGCTTGTTTCTTCTACCGCTGGCAAGGATAATTGTGTGGCCTATGTATT
TATTGGTTTGGGTGGTGATGCGGCCGGTACAATTGATGTGGACGGTGATG
ACGGGCCCTAATCGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGG
AGAGAGAGGAAGAGGAGGAGACGGGACTCAGAAGTCGAAGCGGGCGTGAC
GATAACGACAAAGCACAGCGGAATTTAACGGCAAGAATTTATACAAGTAA
CAATGGCGCTGCAAAAATTGAAATATTATCGACAACACGACCCATGCACG
CGCAAGACTTAAAGAAACTATATATCAAGCTGCACTTATCCACTCATTTG
AACAAATACACGGGACTATCTTCAGTTTTCTTCTTCTTTGCGTCCCATTG
GCATATGCCACGGGCTGCTTGTCGGTCCAGGGCTTGCTGTACACTAGCTA
TGTCCTCGTCCTTCTCTTTGAATCATTAAACTCTACCTCCCCTCTTACAC
CCTCCACTTACAAAATATCTTCCCAGTAATCTTCCGCTTCCTCGACCCCT
CCTCCTTCCTCTTCCTCCGCTGCCACCTTCTGCTTCCCTCCGCCCCCTCC
TTTACCCTCCCCATCCCCCTCCACCTCTACCCTCCTAATCTGCATCCTGA
ACAACTCTGCTATCTGCGCCGCAGTCGTTGCGTCCTCCACCCCCTTATCC
TCCCTCACCTTCAAAAAGCGCGGAAACCTCAAACTCATCCCCTTCTGCTT
GTCTACCAACCCCACCCCTGCCTTATGCACCGGGCTTATGGTCAGTTCCG
CCCCCCGTATCTCCCAAACCTGACAGGGGTCGAACCATATCGGGCACGTC
TCCCCTGTCCTGACGTAACTCTTAGGCGCGTCAATGATCCTCCCCTCACT
CTGATAAAATTTGGTGGTGTCGGCGTACATGGCATCGGTTAATCCCGACA
TGCACCGACAGAGGGACTGGAGCTCTTCGGTCTCGGGGTTGTAGCAGGCG
AGGAGGATGGGAGAGAACCAACCGGCCTTGCGGCCGTTGCCGTACCTGTA
GGAAAGGGAGGGAGGGAGGGAGGGAAAAAGAGGATCGGACGACAAGACAA
AGAAGAAAGAAGGGCATGCGCCTAGACTGGAAGAAAAGCGCAGGGACGGG
GGAAGAGAGGGATGGAAGGAGAAATGGAGGGAGGGATGGAGGGAGGGATG
GAGGGAGGGATGGAGGG
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Coding sequence (CDS) from alignment at chr11:938032..941348+

>NO11G02990.2 ID=NO11G02990.2|Name=NO11G02990.2|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr11:938032..941348+ (Nannochloropsis oceanica)
ATGACGACGTCGGGCGAGACAACAGGCCAGAAGTTGCATCCCGAAGACCG
GCACTTCATTATTGTGGGGGCGGGCCCCGTGGGTCTCCTGGCCGCAATCC
TTCTGGTCCAAGAGATCGACGCCCTTCAGGTGACAATATACGAATCTCGT
GATGGCCTCATTACGGATCTGCAAGAGAGCTATCCCGTTGGCGTCAACCC
TCGAGGGGCCAGGGCGTTGGATCGGGCTAGGCCCGACATGGCCATTGCCC
TGCGCAAACGGGGCGTCATGGTTGATGCCTGGAAGATTTATGCTGGCAGA
CGGATGATCGCTGAGGTACCATCGGGCTTGGTGGTGGGTACTACGCGGAG
CATGATTAACGAGATGTTGTATGAGGAGGTCCGGAAGCATTTTCGAGGAC
GGATTGAAATCAAGTGGGGGCATCGCCTCAAGTCCTTGGACTTGCTCGAA
CGCCGCTTGGTCTTTGACGTAAAACAGCCAGCGACGGATCCTGACCTGGC
ACGGACATATGAGGAAGTGACGGTGGAGGGAGGGGGGGCAAGAATGTTGG
CATGCGATGGGGTCTGGAGCGAGGTGCGTGCGTTTGCAGAGAACCACGTG
GAGGGCTTCAAGAGTCAAATCACTCCCTGGGGGGTTCAATTTCGACTGCT
CTTTTCTAAACCTGGTGCGGGAGCCTTGGCGCCGTACCTGAAGCCTGAGA
ATCACTATGTAATGAGCGGGATCTACGTGTCAATCATTGAGGGCAACGTG
TGGGTCATGGGCTTAGGGATAGATGATGGTCTTCCTGCCCAAACCCGAGA
TCTCCTTCTCGCCACGGAATCGACGCCTACACGTGTGGCGGCCTTGCGGG
CATATGTCACGAAGAAGGCACCCTTGGCGGCCCCATTCTTGACGGAGGAG
GATTTGAGTATGTATTTTAAGAGGAGGAGCTTTCGCGGAGCGATGGTGAA
GGTTAACCGACTTAATCTTGGGGAGTGGGGCGTGTTGCTGGGTGGTACGT
ACAGAGGCGTGGGAGAACAAGAAGGGGAAATGATGAAGAGGGGGAGGGGC
AATGGATTTGATTCCATGTTTTTTGCGTCGAGTACATGA
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Synonyms
Publications