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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:920327..923363 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02930.1 vs.
Match: EWM24918.1 (ankyrin repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 324.3 bits (830), Expect = 1.200e-84 Identity = 166/259 (64.09%), Postives = 200/259 (77.22%), Query Frame = 0
Query: 639 QDKEDYPPKIMEDRDLRKLVENNPRCADCEAPHPDWVSLNLGVVICLQCSGVHRSLGVHVSKVRSLALDQMDETDLAVLAKLGNASVNRVYEHKLLDGWQKPSPDEPRLKREQFVKAKYVWKGFTPLMNGEKGALKREGEGDR--VAEG-GSGNYGQAQQVQLA-SQALVDAVLCNDLGAALAALVQGADIHWTGGNGNEKRQTALHLAAQSGDAVVEAVAFLVQNGANVSVRDGEDLTALDLATKGHHAQTVRYLLKF 894
QDKE YPPKI++D L+ L + NP CADCEAPHPDWVSLNLGVV+CLQCSGVHRSLGVHVSK+RSLALD +D DLA++++LGN VN+VYE++ DGW+KP P E R R Q++KAKYVWKGFT +++ G+ E G R +AE G G+A+ +L S LV AV+ N+L AL ALVQGAD+ WTGG NEK +T LHLAA+ GD VVEAVAFLVQNGANV +RD +DLTALDLAT+GHHA TV+YLLKF
Sbjct: 2 QDKEHYPPKILQDPALKALTQQNPLCADCEAPHPDWVSLNLGVVVCLQCSGVHRSLGVHVSKIRSLALDDVDPVDLALVSRLGNTRVNKVYEYQFPDGWRKPRPHEDRSARAQYIKAKYVWKGFTCIVSDGVGSAAGENNGGRSEIAEAIDLGVAGKAKDDKLGNSLMLVKAVMENNLEGALEALVQGADVDWTGGTENEKGRTPLHLAARQGDEVVEAVAFLVQNGANVGLRDRDDLTALDLATQGHHALTVQYLLKF 260
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02930.1 ID=NO11G02930.1|Name=NO11G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=2682bp ATGTCATCACCCTCGTCGCATTCGTGCGCCGCCTCTCCGCCGCCGGACGT GGCAGTCTACTCCTTCCTGTCTGCTTATGACGACGACGAGAAGGAGGAGG ATGATGATGATGATGAGGAGAAGGAAGGAGAGGAGGAGAGGGAGGATGAG GACGATCAGCAGCCTCAGGAGCGGGGGCGACAAGAAGCGTCGGACGCCAT GTCTGAATCTGGCGAGTGCTTCCTGGACCAGTTTGACGAACACTTACCCC AGCATCACCATCCCGCCGCGGCCGCATTGTGGGAGGAAGACTCACCATAT TTCGCAGAGCGGGCGCATAATTCGCTACGAGACGTTCAAGAATGCTCCAG CAACATCAAAGAGTTGATCAAGGGCATGAAAGACCTCTGCAAGGCATCCA CCACCATGAGCAACGCCTCCAAATCCCTGGCCAAGAGTAATAAAGAAGTC GCCACGAAAATAGCCAGCCTCGGGGGAATAGAAGTTGTCCCTCTCCTCCA CCGCTTCGCTAACACCCTGGATGAAATGGCCACCGCACACGACATGCTTG TGCACTCCCTCACTCAATCCTTCGTCGTCCCTCTGCAAACGTTCTGCAGA CACGAAGCAGACAAGGCCAGCGACTACGAAAAAAGCTACCACTACGAAAA ACATGCATTCACCGATTCCCTTGGCAAGTTGCTTCGAGGACCCCTCAGAA CCAGTAGCAAGACCCCTCCGGCCGTTGCACTCACGAACCGGGCACAGGAC GTGGGGCTGAGACGGCGAGGCATGGAGCAAGCACGACACCGACTTGCCCG TACAGTGGATTCGCTGGACGTGAGACGAACGTTGGAGTTGACGGAGGGAG TAGTTGCGGTCCTATTTGCATTTCAGGCACATCATTCGATGTTGGTGGAT TCCATGTCGACGCTCGGCCCCTCCCTAGAGGAGCTGAGGGCGTCTCAGAG CAAAGCCAGGGATGGTCTCAAGGTGGGAGACGAGCAATGGGAACGACGGG CCGAGATGTTGGACATGCTGCTGCCAACAGAGGTGGCTGAACGGAGCGTG GACACGTGCGATGAAGCGCGATTCGCCCACCTCTCGACGGTGGAAGCTGC TGCGGTTAGCCCTCTTTCTACCTCTTTGCTTGATCTGGTTGACCGGAGAT TTGGAGTGTTGGAGATTCAGGAGAGTCTTAGAAGGACTTTATTCCAGCCA CGAGCGGCGCCGGGAGTGCACCACGAGAGCTTCTTGCACATGCGAGTGCC TACAAAGGGACTAGCGGCCACGACGGCAAGCTACACTTGGGCCCGACGGT GGTTTGTTCTGGAGGGGAGTAGTCTCTACTATGTCAGGGAGAACGCGGGG GACATGCTGGGGGAGGTGGTGGAGGGATCCGAAAGGAGCTTAGTCTGTGA CGTGGTCCTATCGAGTGTGCGGGAAGTTCCGTCAGGGGATAACAGCAGCA GCAGCAGCAGCAGCCATAACAACCACGGCAGTAGTAGTAGCAGCGCTAAC GACCCGAACGCCCCCCCGGCACTACCATATTGCCTCGAAATTTTCTCCGC GAACCGCAAGTCGTTTGTATTACAAGCAGAAGGATCAACCGAATATCACG CATGGCTTCAAGCTCTCCGAAGGCGAATCGAGCGTTTATTAGTAGGAGGG GAAGGAGTGAATTTACCTTCGAGGGGAAGAAGTGCGCCCTCGTCACCGGA GAGGGTGAGGAGTTTGAGTCCGACGAACTTGTTGAGGTCCACATTGACGT TTTCACCAAGGAGGGTGGTTATGTCAGGGTTTGGGCTGAGAGAGAGTTAC TTAGGAGGAGGAGGAGGGGGAGGGGGAAGAGAGGGAGAAAGGAGTCCCAG AAGAGGATTTGGGGGGGGAGGGAGTCCTAGAGGAGAAGGAGGAGAGGGAG GAGGTTTTGCGTCTCAGGATAAAGAGGACTACCCGCCTAAGATAATGGAG GACCGAGATTTGAGGAAGCTGGTGGAAAATAACCCGCGGTGCGCGGACTG TGAGGCACCGCACCCGGATTGGGTTTCATTGAATCTGGGAGTTGTAATTT GTTTGCAATGCTCGGGGGTCCACCGCTCCCTGGGTGTGCATGTGAGTAAG GTGAGGAGTCTTGCCCTGGACCAAATGGATGAGACGGACCTGGCGGTATT GGCGAAGCTGGGAAATGCGAGTGTGAATCGTGTGTACGAACATAAGCTTT TGGACGGGTGGCAGAAGCCTTCCCCTGACGAGCCGCGGTTGAAGAGGGAG CAGTTTGTCAAGGCGAAGTATGTGTGGAAGGGCTTTACGCCTTTGATGAA TGGGGAGAAAGGAGCTTTGAAAAGAGAAGGGGAAGGAGACAGAGTTGCAG AAGGAGGAAGTGGTAATTATGGACAAGCACAGCAAGTCCAGCTAGCGTCA CAAGCGCTTGTCGATGCGGTTCTTTGCAACGACTTGGGTGCGGCCCTCGC GGCTTTAGTGCAAGGAGCGGACATTCACTGGACGGGTGGAAACGGAAATG AAAAGCGACAGACAGCTCTGCACCTGGCCGCGCAAAGCGGGGATGCCGTT GTGGAAGCTGTGGCTTTTCTCGTCCAGAACGGAGCAAATGTGTCGGTGCG AGATGGAGAGGATTTGACTGCGTTGGACTTGGCGACAAAGGGCCATCATG CGCAGACTGTACGGTACTTGCTGAAGTTTTGA back to topprotein sequence of NO11G02930.1 >NO11G02930.1-protein ID=NO11G02930.1-protein|Name=NO11G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=894bp MSSPSSHSCAASPPPDVAVYSFLSAYDDDEKEEDDDDDEEKEGEEEREDE DDQQPQERGRQEASDAMSESGECFLDQFDEHLPQHHHPAAAALWEEDSPY FAERAHNSLRDVQECSSNIKELIKGMKDLCKASTTMSNASKSLAKSNKEV ATKIASLGGIEVVPLLHRFANTLDEMATAHDMLVHSLTQSFVVPLQTFCR HEADKASDYEKSYHYEKHAFTDSLGKLLRGPLRTSSKTPPAVALTNRAQD VGLRRRGMEQARHRLARTVDSLDVRRTLELTEGVVAVLFAFQAHHSMLVD SMSTLGPSLEELRASQSKARDGLKVGDEQWERRAEMLDMLLPTEVAERSV DTCDEARFAHLSTVEAAAVSPLSTSLLDLVDRRFGVLEIQESLRRTLFQP RAAPGVHHESFLHMRVPTKGLAATTASYTWARRWFVLEGSSLYYVRENAG DMLGEVVEGSERSLVCDVVLSSVREVPSGDNSSSSSSSHNNHGSSSSSAN DPNAPPALPYCLEIFSANRKSFVLQAEGSTEYHAWLQALRRRIERLLVGG EGVNLPSRGRSAPSSPERVRSLSPTNLLRSTLTFSPRRVVMSGFGLRESY LGGGGGGGGREGERSPRRGFGGGGSPRGEGGEGGGFASQDKEDYPPKIME DRDLRKLVENNPRCADCEAPHPDWVSLNLGVVICLQCSGVHRSLGVHVSK VRSLALDQMDETDLAVLAKLGNASVNRVYEHKLLDGWQKPSPDEPRLKRE QFVKAKYVWKGFTPLMNGEKGALKREGEGDRVAEGGSGNYGQAQQVQLAS QALVDAVLCNDLGAALAALVQGADIHWTGGNGNEKRQTALHLAAQSGDAV VEAVAFLVQNGANVSVRDGEDLTALDLATKGHHAQTVRYLLKF* back to topmRNA from alignment at chr11:920327..923363- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02930.1 ID=NO11G02930.1|Name=NO11G02930.1|organism=Nannochloropsis oceanica|type=mRNA|length=3037bp|location=Sequence derived from alignment at chr11:920327..923363- (Nannochloropsis oceanica) ATGTCATCACCCTCGTCGCATTCGTGCGCCGCCTCTCCGCCGCCGGACGT
GGCAGTCTACTCCTTCCTGTCTGCTTATGACGACGACGAGAAGGAGGAGG
ATGATGATGATGATGAGGAGAAGGAAGGAGAGGAGGAGAGGGAGGATGAG
GACGATCAGCAGCCTCAGGAGCGGGGGCGACAAGAAGCGTCGGACGCCAT
GTCTGAATCTGGCGAGTGCTTCCTGGACCAGTTTGACGAACACTTACCCC
AGCATCACCATCCCGCCGCGGCCGCATTGTGGGAGGAAGACTCACCATAT
TTCGCAGAGCGGGCGCATAATTCGGTAGGTAATTCTCATCCCCCCTTTTC
GTTGTTCTGGACGCTGTCAAAGACGTTGCTGAGCCCAGTACCTTTCCATC
CCTCCCTTCCCACATTGCAACCCTCCTTCTCCCTTCCACACCATCCAATT
CAATCACACCTCAACCCCAAAATCTATCCAGCTACGAGACGTTCAAGAAT
GCTCCAGCAACATCAAAGAGTTGATCAAGGGCATGAAAGACCTCTGCAAG
GCATCCACCACCATGAGCAACGCCTCCAAATCCCTGGCCAAGAGTAATAA
AGAAGTCGCCACGAAAATAGCCAGCCTCGGGGGAATAGAAGTTGTCCCTC
TCCTCCACCGCTTCGCTAACACCCTGGATGAAATGGCCACCGCACACGAC
ATGCTTGTGCACTCCCTCACTCAATCCTTCGTCGTCCCTCTGCAAACGTT
CTGCAGACACGAAGCAGACAAGGCCAGCGACTACGAAAAAAGCTACCACT
ACGAAAAACATGCATTCACCGATTCCCTTGGCAAGTTGCTTCGAGGACCC
CTCAGAACCAGTAGCAAGACCCCTCCGGCCGTTGCACTCACGAACCGGGC
ACAGGACGTGGGGCTGAGACGGCGAGGCATGGAGCAAGCACGACACCGAC
TTGCCCGTACAGTGGATTCGCTGGACGTGAGACGAACGTTGGAGTTGACG
GAGGGAGTAGTTGCGGTCCTATTTGCATTTCAGGCACATCATTCGATGTT
GGTGGATTCCATGTCGACGCTCGGCCCCTCCCTAGAGGAGCTGAGGGCGT
CTCAGAGCAAAGCCAGGGATGGTCTCAAGGTGGGAGACGAGCAATGGGAA
CGACGGGCCGAGATGTTGGACATGCTGCTGCCAACAGAGGTGGCTGAACG
GAGCGTGGACACGTGCGATGAAGCGCGATTCGCCCACCTCTCGACGGTGG
AAGCTGCTGCGGTTAGCCCTCTTTCTACCTCTTTGCTTGATCTGGTTGAC
CGGAGATTTGGAGTGTTGGAGATTCAGGAGAGTCTTAGAAGGACTTTATT
CCAGCCACGAGCGGCGCCGGGAGTGCACCACGAGAGCTTCTTGCACATGC
GAGTGCCTACAAAGGGACTAGGTGGGTGAGAGGGAGGGATGGGGGGAGGG
AGGGGAGGTGGGAGGGCGAAAGGGGGGGATGGAGGGTAGCGAAGAGGGGG
GGACAGGGGGGGACAGAGGAATAGTCCACATATGATTCATAAATTCTTCA
AACCTGCCCTTTCCATCCACCTCTCTCTCTCCTTGCCCTCCTTTCTCCCT
CTTCTCTCCTCTCAATCAGCGGCCACGACGGCAAGCTACACTTGGGCCCG
ACGGTGGTTTGTTCTGGAGGGGAGTAGTCTCTACTATGTCAGGGAGAACG
CGGGGGACATGCTGGGGGAGGTGGTGGAGGGATCCGAAAGGAGCTTAGTC
TGTGACGTGGTCCTATCGAGTGTGCGGGAAGTTCCGTCAGGGGATAACAG
CAGCAGCAGCAGCAGCAGCCATAACAACCACGGCAGTAGTAGTAGCAGCG
CTAACGACCCGAACGCCCCCCCGGCACTACCATATTGCCTCGAAATTTTC
TCCGCGAACCGCAAGTCGTTTGTATTACAAGCAGAAGGATCAACCGAATA
TCACGCATGGCTTCAAGCTCTCCGAAGGCGAATCGAGCGTTTATTAGTAG
GAGGGGAAGGAGTGAATTTACCTTCGAGGGGAAGAAGTGCGCCCTCGTCA
CCGGAGAGGGTGAGGAGTTTGAGTCCGACGAACTTGTTGAGGTCCACATT
GACGTTTTCACCAAGGAGGGTGGTTATGTCAGGGTTTGGGCTGAGAGAGA
GTTACTTAGGAGGAGGAGGAGGGGGAGGGGGAAGAGAGGGAGAAAGGAGT
CCCAGAAGAGGATTTGGGGGGGGAGGGAGTCCTAGAGGAGAAGGAGGAGA
GGGAGGAGGTTTTGCGTCTCAGGATAAAGAGGACTACCCGCCTAAGATAA
TGGAGGACCGAGATTTGAGGAAGCTGGTGGAAAATAACCCGCGGTGCGCG
GACTGTGAGGCACCGCACCCGGATTGGGTTTCATTGAATCTGGGAGTTGT
AATTTGTTTGCAATGCTCGGGGGTCCACCGCTCCCTGGGTGTGCATGTGA
GTAAGGTGAGGAGTCTTGCCCTGGACCAAATGGATGAGACGGACCTGGCG
GTATTGGCGAAGCTGGGAAATGCGAGTGTGAATCGTGTGTACGAACATAA
GCTTTTGGACGGGTGGCAGAAGCCTTCCCCTGACGAGCCGCGGTTGAAGA
GGGAGCAGTTTGTCAAGGCGAAGTATGTGTGGAAGGGCTTTACGCCTTTG
ATGAATGGGGAGAAAGGAGCTTTGAAAAGAGAAGGGGAAGGAGACAGAGT
TGCAGAAGGAGGAAGTGGTAATTATGGACAAGCACAGCAAGTCCAGCTAG
CGTCACAAGCGCTTGTCGATGCGGTTCTTTGCAACGACTTGGGTGCGGCC
CTCGCGGCTTTAGTGCAAGGAGCGGACATTCACTGGACGGGTGGAAACGG
AAATGAAAAGCGACAGACAGCTCTGCACCTGGCCGCGCAAAGCGGGGATG
CCGTTGTGGAAGCTGTGGCTTTTCTCGTCCAGAACGGAGCAAATGTGTCG
GTGCGAGATGGAGAGGATTTGACTGCGTTGGACTTGGCGACAAAGGGCCA
TCATGCGCAGACTGTACGGTACTTGCTGAAGTTTTGA back to topCoding sequence (CDS) from alignment at chr11:920327..923363- >NO11G02930.1 ID=NO11G02930.1|Name=NO11G02930.1|organism=Nannochloropsis oceanica|type=CDS|length=2682bp|location=Sequence derived from alignment at chr11:920327..923363- (Nannochloropsis oceanica) ATGTCATCACCCTCGTCGCATTCGTGCGCCGCCTCTCCGCCGCCGGACGT GGCAGTCTACTCCTTCCTGTCTGCTTATGACGACGACGAGAAGGAGGAGG ATGATGATGATGATGAGGAGAAGGAAGGAGAGGAGGAGAGGGAGGATGAG GACGATCAGCAGCCTCAGGAGCGGGGGCGACAAGAAGCGTCGGACGCCAT GTCTGAATCTGGCGAGTGCTTCCTGGACCAGTTTGACGAACACTTACCCC AGCATCACCATCCCGCCGCGGCCGCATTGTGGGAGGAAGACTCACCATAT TTCGCAGAGCGGGCGCATAATTCGCTACGAGACGTTCAAGAATGCTCCAG CAACATCAAAGAGTTGATCAAGGGCATGAAAGACCTCTGCAAGGCATCCA CCACCATGAGCAACGCCTCCAAATCCCTGGCCAAGAGTAATAAAGAAGTC GCCACGAAAATAGCCAGCCTCGGGGGAATAGAAGTTGTCCCTCTCCTCCA CCGCTTCGCTAACACCCTGGATGAAATGGCCACCGCACACGACATGCTTG TGCACTCCCTCACTCAATCCTTCGTCGTCCCTCTGCAAACGTTCTGCAGA CACGAAGCAGACAAGGCCAGCGACTACGAAAAAAGCTACCACTACGAAAA ACATGCATTCACCGATTCCCTTGGCAAGTTGCTTCGAGGACCCCTCAGAA CCAGTAGCAAGACCCCTCCGGCCGTTGCACTCACGAACCGGGCACAGGAC GTGGGGCTGAGACGGCGAGGCATGGAGCAAGCACGACACCGACTTGCCCG TACAGTGGATTCGCTGGACGTGAGACGAACGTTGGAGTTGACGGAGGGAG TAGTTGCGGTCCTATTTGCATTTCAGGCACATCATTCGATGTTGGTGGAT TCCATGTCGACGCTCGGCCCCTCCCTAGAGGAGCTGAGGGCGTCTCAGAG CAAAGCCAGGGATGGTCTCAAGGTGGGAGACGAGCAATGGGAACGACGGG CCGAGATGTTGGACATGCTGCTGCCAACAGAGGTGGCTGAACGGAGCGTG GACACGTGCGATGAAGCGCGATTCGCCCACCTCTCGACGGTGGAAGCTGC TGCGGTTAGCCCTCTTTCTACCTCTTTGCTTGATCTGGTTGACCGGAGAT TTGGAGTGTTGGAGATTCAGGAGAGTCTTAGAAGGACTTTATTCCAGCCA CGAGCGGCGCCGGGAGTGCACCACGAGAGCTTCTTGCACATGCGAGTGCC TACAAAGGGACTAGCGGCCACGACGGCAAGCTACACTTGGGCCCGACGGT GGTTTGTTCTGGAGGGGAGTAGTCTCTACTATGTCAGGGAGAACGCGGGG GACATGCTGGGGGAGGTGGTGGAGGGATCCGAAAGGAGCTTAGTCTGTGA CGTGGTCCTATCGAGTGTGCGGGAAGTTCCGTCAGGGGATAACAGCAGCA GCAGCAGCAGCAGCCATAACAACCACGGCAGTAGTAGTAGCAGCGCTAAC GACCCGAACGCCCCCCCGGCACTACCATATTGCCTCGAAATTTTCTCCGC GAACCGCAAGTCGTTTGTATTACAAGCAGAAGGATCAACCGAATATCACG CATGGCTTCAAGCTCTCCGAAGGCGAATCGAGCGTTTATTAGTAGGAGGG GAAGGAGTGAATTTACCTTCGAGGGGAAGAAGTGCGCCCTCGTCACCGGA GAGGGTGAGGAGTTTGAGTCCGACGAACTTGTTGAGGTCCACATTGACGT TTTCACCAAGGAGGGTGGTTATGTCAGGGTTTGGGCTGAGAGAGAGTTAC TTAGGAGGAGGAGGAGGGGGAGGGGGAAGAGAGGGAGAAAGGAGTCCCAG AAGAGGATTTGGGGGGGGAGGGAGTCCTAGAGGAGAAGGAGGAGAGGGAG GAGGTTTTGCGTCTCAGGATAAAGAGGACTACCCGCCTAAGATAATGGAG GACCGAGATTTGAGGAAGCTGGTGGAAAATAACCCGCGGTGCGCGGACTG TGAGGCACCGCACCCGGATTGGGTTTCATTGAATCTGGGAGTTGTAATTT GTTTGCAATGCTCGGGGGTCCACCGCTCCCTGGGTGTGCATGTGAGTAAG GTGAGGAGTCTTGCCCTGGACCAAATGGATGAGACGGACCTGGCGGTATT GGCGAAGCTGGGAAATGCGAGTGTGAATCGTGTGTACGAACATAAGCTTT TGGACGGGTGGCAGAAGCCTTCCCCTGACGAGCCGCGGTTGAAGAGGGAG CAGTTTGTCAAGGCGAAGTATGTGTGGAAGGGCTTTACGCCTTTGATGAA TGGGGAGAAAGGAGCTTTGAAAAGAGAAGGGGAAGGAGACAGAGTTGCAG AAGGAGGAAGTGGTAATTATGGACAAGCACAGCAAGTCCAGCTAGCGTCA CAAGCGCTTGTCGATGCGGTTCTTTGCAACGACTTGGGTGCGGCCCTCGC GGCTTTAGTGCAAGGAGCGGACATTCACTGGACGGGTGGAAACGGAAATG AAAAGCGACAGACAGCTCTGCACCTGGCCGCGCAAAGCGGGGATGCCGTT GTGGAAGCTGTGGCTTTTCTCGTCCAGAACGGAGCAAATGTGTCGGTGCG AGATGGAGAGGATTTGACTGCGTTGGACTTGGCGACAAAGGGCCATCATG CGCAGACTGTACGGTACTTGCTGAAGTTTTGA back to top
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