NO11G02910.1, NO11G02910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02910.1
Unique NameNO11G02910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length762
Alignment locationchr11:916260..917021 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:916260..917021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G02910.1 vs.
Match: EWM24910.1 (ribulose-phosphate 3-epimerase [Nannochloropsis gaditana])

HSP 1 Score: 479.9 bits (1234), Expect = 4.700e-132
Identity = 234/251 (93.23%), Postives = 245/251 (97.61%), Query Frame = 0 
Query:    1 MATVTHGFVVPAPRTYSRGRIAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKAGLVFNPATPLTMAKHVLDKIDIILLMSVNPGFGGQSFIPETLVKLREARKMIDESGYDIRLEVDGGVGVANIKEIAEAGADFFVAGSAILKNPRTQDAYKGTIDQMRAELAKV 252
            +ATV HGFV P PR+Y+RGR+AMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCK+GLVFNPATPL++A+HVLDK+DIILLMSVNPGFGGQSFIPETL KL+EARKMIDESGYDIRLEVDGGVGVANIK+IAEAGADFFVAGSAILKNPRTQDAYK TID MRAELAKV
Sbjct:   15 LATVAHGFVPPVPRSYTRGRMAMAAKKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSGLVFNPATPLSLAQHVLDKVDIILLMSVNPGFGGQSFIPETLKKLKEARKMIDESGYDIRLEVDGGVGVANIKDIAEAGADFFVAGSAILKNPRTQDAYKATIDAMRAELAKV 265
The following BLAST results are available for this feature:
BLAST of NO11G02910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24910.14.700e-13293.23ribulose-phosphate 3-epimerase [Nannochloropsis ga... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02910NO11G02910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02910.1NO11G02910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02910.1.cds1NO11G02910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02910.1 ID=NO11G02910.1|Name=NO11G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=762bp
ATGGCCACGGTCACTCACGGCTTTGTTGTCCCGGCTCCCCGCACTTACTC
CCGCGGCCGCATCGCCATGGCTGCCAAGAAGGACTTCTGGATTGCGCCCT
CCATCCTCTCTGCTGACTTTGCCAAGCTTGGGCAAGAAGTGGACAACGTC
CTGGCCGCTGGTGCTGACATCGTGCACTTCGATGTGATGGACAACCACTA
CGTCCCCAACTTGACGATCGGCCCCATGGTCTGCAAGGCCCTGCGCGACC
ACGGCGTCACCGCCCCCATTGACGTGCACTTGATGGTTTCCCCCGTTGAC
CGTATCATCCCTGATTTTGCTGATGCCGGCGCTTCCTTCATCACCTTCCA
CCCGGAAGCTACCAACCACATTGACCGAACCCTGCAACTTATCAAGAGCA
AAGGGTGCAAGGCTGGCTTGGTCTTCAACCCCGCTACCCCCCTCACCATG
GCCAAGCACGTCCTGGACAAAATCGACATCATTCTTCTCATGTCTGTGAA
CCCCGGTTTTGGTGGGCAATCCTTCATTCCCGAAACCCTGGTCAAGCTGC
GTGAGGCCCGTAAAATGATCGACGAGTCCGGGTATGATATCCGCCTGGAG
GTCGATGGTGGGGTTGGCGTGGCCAACATCAAGGAGATTGCCGAAGCTGG
CGCTGATTTCTTTGTGGCGGGGAGTGCTATCTTGAAGAACCCCCGCACCC
AGGATGCCTACAAGGGGACGATTGACCAGATGCGTGCCGAGCTGGCGAAG
GTGAGCAAGTAG
back to top

protein sequence of NO11G02910.1

>NO11G02910.1-protein ID=NO11G02910.1-protein|Name=NO11G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MATVTHGFVVPAPRTYSRGRIAMAAKKDFWIAPSILSADFAKLGQEVDNV
LAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVD
RIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKAGLVFNPATPLTM
AKHVLDKIDIILLMSVNPGFGGQSFIPETLVKLREARKMIDESGYDIRLE
VDGGVGVANIKEIAEAGADFFVAGSAILKNPRTQDAYKGTIDQMRAELAK
VSK*
back to top

mRNA from alignment at chr11:916260..917021+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02910.1 ID=NO11G02910.1|Name=NO11G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=762bp|location=Sequence derived from alignment at chr11:916260..917021+ (Nannochloropsis oceanica)
ATGGCCACGGTCACTCACGGCTTTGTTGTCCCGGCTCCCCGCACTTACTC
CCGCGGCCGCATCGCCATGGCTGCCAAGAAGGACTTCTGGATTGCGCCCT
CCATCCTCTCTGCTGACTTTGCCAAGCTTGGGCAAGAAGTGGACAACGTC
CTGGCCGCTGGTGCTGACATCGTGCACTTCGATGTGATGGACAACCACTA
CGTCCCCAACTTGACGATCGGCCCCATGGTCTGCAAGGCCCTGCGCGACC
ACGGCGTCACCGCCCCCATTGACGTGCACTTGATGGTTTCCCCCGTTGAC
CGTATCATCCCTGATTTTGCTGATGCCGGCGCTTCCTTCATCACCTTCCA
CCCGGAAGCTACCAACCACATTGACCGAACCCTGCAACTTATCAAGAGCA
AAGGGTGCAAGGCTGGCTTGGTCTTCAACCCCGCTACCCCCCTCACCATG
GCCAAGCACGTCCTGGACAAAATCGACATCATTCTTCTCATGTCTGTGAA
CCCCGGTTTTGGTGGGCAATCCTTCATTCCCGAAACCCTGGTCAAGCTGC
GTGAGGCCCGTAAAATGATCGACGAGTCCGGGTATGATATCCGCCTGGAG
GTCGATGGTGGGGTTGGCGTGGCCAACATCAAGGAGATTGCCGAAGCTGG
CGCTGATTTCTTTGTGGCGGGGAGTGCTATCTTGAAGAACCCCCGCACCC
AGGATGCCTACAAGGGGACGATTGACCAGATGCGTGCCGAGCTGGCGAAG
GTGAGCAAGTAG
back to top

Coding sequence (CDS) from alignment at chr11:916260..917021+

>NO11G02910.1 ID=NO11G02910.1|Name=NO11G02910.1|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at chr11:916260..917021+ (Nannochloropsis oceanica)
ATGGCCACGGTCACTCACGGCTTTGTTGTCCCGGCTCCCCGCACTTACTC
CCGCGGCCGCATCGCCATGGCTGCCAAGAAGGACTTCTGGATTGCGCCCT
CCATCCTCTCTGCTGACTTTGCCAAGCTTGGGCAAGAAGTGGACAACGTC
CTGGCCGCTGGTGCTGACATCGTGCACTTCGATGTGATGGACAACCACTA
CGTCCCCAACTTGACGATCGGCCCCATGGTCTGCAAGGCCCTGCGCGACC
ACGGCGTCACCGCCCCCATTGACGTGCACTTGATGGTTTCCCCCGTTGAC
CGTATCATCCCTGATTTTGCTGATGCCGGCGCTTCCTTCATCACCTTCCA
CCCGGAAGCTACCAACCACATTGACCGAACCCTGCAACTTATCAAGAGCA
AAGGGTGCAAGGCTGGCTTGGTCTTCAACCCCGCTACCCCCCTCACCATG
GCCAAGCACGTCCTGGACAAAATCGACATCATTCTTCTCATGTCTGTGAA
CCCCGGTTTTGGTGGGCAATCCTTCATTCCCGAAACCCTGGTCAAGCTGC
GTGAGGCCCGTAAAATGATCGACGAGTCCGGGTATGATATCCGCCTGGAG
GTCGATGGTGGGGTTGGCGTGGCCAACATCAAGGAGATTGCCGAAGCTGG
CGCTGATTTCTTTGTGGCGGGGAGTGCTATCTTGAAGAACCCCCGCACCC
AGGATGCCTACAAGGGGACGATTGACCAGATGCGTGCCGAGCTGGCGAAG
GTGAGCAAGTAG
back to top
Synonyms
Publications