NO11G02850.1, NO11G02850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02850.1
Unique NameNO11G02850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1379
Alignment locationchr11:897169..898878 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:897169..898878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02850.1 vs.
Match: EWM24961.1 (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 415.6 bits (1067), Expect = 1.600e-112
Identity = 217/307 (70.68%), Postives = 260/307 (84.69%), Query Frame = 0 
Query:   53 MGNLFSLISGPSLDTFLNGKVIWITGASSGLGRALAIEAARRGARVVLSARRVDKLEDVKKQCLAVAVPPLSSPS--------SSTTTSKRVLVQPLDMARYDDPSFAAAVAHVSAIMGGLDILINNAGVSTRSSAADTSLSVDLSVMASNFFGPVALTKLSLPLLRQSPSHAPHLIVVNSVQGKFGLGLRTSYSASKHALTGYFDSLRAELSAEAIPVTAIFPGYIKTDLSLNALTGQGEKHGQMDETTAKGLDPSDLALKIFKAAAAGKKEAVYAPVDARVAIWMRNVMPDLVFSILGSKARKAL 352
            MGNL S  SGPS+D FL+GKV+WITGASSGLG+A+AIEAARRGARV+LSAR +DKL++V+++CLAV+    S+ S        SS   S  VLV PLDM RYDD SF AA+A V + MGGLDIL+NNAGVSTRSSA +TSLSVD SVMA+NFFGPVALTK +L LLRQSPS +PH++VVNS QGK GLG+RTSY+ASKHALTGYFDSLRAELS E+IPVT +FPGYI+TDLSLNALTG+GEK+ QMDETTAKGLDP+ LA+KIF+AAAAGK+E ++AP+DAR AI++RN++P +VF IL  KA+KAL
Sbjct:    1 MGNLLSFSSGPSIDNFLDGKVVWITGASSGLGKAMAIEAARRGARVILSARSIDKLKNVEQECLAVSPLKTSNASRSARSRCSSSDAPSATVLVHPLDMLRYDDGSFDAAIALVLSTMGGLDILVNNAGVSTRSSAEETSLSVDQSVMATNFFGPVALTKAALCLLRQSPSRSPHIVVVNSAQGKLGLGMRTSYAASKHALTGYFDSLRAELSLESIPVTTVFPGYIRTDLSLNALTGRGEKYAQMDETTAKGLDPTRLAVKIFQAAAAGKQEVIFAPIDARAAIYLRNIIPHVVFRILARKAQKAL 307
The following BLAST results are available for this feature:
BLAST of NO11G02850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24961.11.600e-11270.68short-chain dehydrogenase reductase sdr [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02850NO11G02850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02850.1NO11G02850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02850.1.cds1NO11G02850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02850.1.cds2NO11G02850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02850.1 ID=NO11G02850.1|Name=NO11G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp
GCCTGAAAGGCTGATGAAAGCTTCTTTTGTACGAGCCAGAGCTCAAAAAA
GCCCCGAATGGCATGTCTTTATCAGCACCACACGCATCCAAGCATATCAA
CCCCGCCATAGCATGGGCAAGCGGTGGACTTGGTGTCGGTCAAATTTTGC
CTGCTCGCCGACGCGCCGACAGACGTTTCTTAGCGGGCGAGCACCCACGC
AGCAACGACGATCTAATCTCAAACCCACAGCCTGACAATTACAGCGCATG
GGACGCTGGGTCCGGGTTCTCGTCCACGTGCTCCTCTTCCTCATAGTCGT
TGCAATCCCTGTGTCTGGCTTTGTCGTAGGTCTGCACCAGTCAACGAGAC
CTTTCCCATCGTTGCCCGCACGCGTTGTATATAGTAAACCCCACGCCATC
GTCATGGGCAACCTCTTCTCCCTCATATCCGGGCCATCTCTCGATACATT
CCTTAACGGCAAAGTAATCTGGATCACTGGTGCTTCTAGTGGCTTGGGAA
GAGCCTTGGCAATCGAAGCCGCTCGTCGGGGCGCCCGCGTTGTTCTTAGC
GCGCGTCGCGTCGACAAGCTGGAGGACGTCAAGAAACAATGCCTTGCTGT
CGCAGTACCCCCATTATCCTCACCTTCATCTTCCACCACGACTTCCAAGC
GTGTGCTTGTCCAACCCCTCGACATGGCTCGGTACGACGACCCGAGCTTT
GCAGCCGCCGTCGCCCACGTTAGCGCCATCATGGGCGGACTCGATATCTT
AATCAACAACGCAGGGGTGTCTACCCGCAGCAGTGCCGCAGACACCTCCC
TCTCTGTCGACCTTTCTGTCATGGCAAGCAATTTCTTCGGCCCAGTGGCA
CTTACCAAACTTTCCCTTCCCCTCCTCCGTCAAAGCCCCTCCCATGCCCC
CCATCTCATCGTCGTCAACAGCGTGCAAGGGAAATTCGGATTAGGCCTCC
GCACGTCCTACTCGGCGTCCAAGCATGCCTTGACCGGCTACTTCGACTCC
CTCCGCGCAGAACTATCCGCTGAGGCCATCCCCGTTACGGCTATTTTCCC
CGGCTACATAAAAACGGATCTATCATTGAATGCTTTGACAGGGCAAGGAG
AAAAACACGGACAAATGGACGAAACCACCGCGAAAGGGCTTGACCCTTCC
GACTTGGCCTTGAAGATTTTCAAGGCAGCAGCCGCGGGGAAAAAGGAGGC
GGTGTATGCGCCAGTCGATGCCAGGGTGGCGATCTGGATGAGAAATGTAA
TGCCGGATTTGGTATTCAGCATATTAGGGAGTAAAGCCCGGAAGGCTCTG
GGGGTGGGAAAGATAGAGGGGAAGAAGGAGGATTGATTGATTGAAAACTA
GAAAACAACAAGAGTTGCTTATGGTGGGG
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protein sequence of NO11G02850.1

>NO11G02850.1-protein ID=NO11G02850.1-protein|Name=NO11G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MGRWVRVLVHVLLFLIVVAIPVSGFVVGLHQSTRPFPSLPARVVYSKPHA
IVMGNLFSLISGPSLDTFLNGKVIWITGASSGLGRALAIEAARRGARVVL
SARRVDKLEDVKKQCLAVAVPPLSSPSSSTTTSKRVLVQPLDMARYDDPS
FAAAVAHVSAIMGGLDILINNAGVSTRSSAADTSLSVDLSVMASNFFGPV
ALTKLSLPLLRQSPSHAPHLIVVNSVQGKFGLGLRTSYSASKHALTGYFD
SLRAELSAEAIPVTAIFPGYIKTDLSLNALTGQGEKHGQMDETTAKGLDP
SDLALKIFKAAAAGKKEAVYAPVDARVAIWMRNVMPDLVFSILGSKARKA
LGVGKIEGKKED*
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mRNA from alignment at chr11:897169..898878+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02850.1 ID=NO11G02850.1|Name=NO11G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1710bp|location=Sequence derived from alignment at chr11:897169..898878+ (Nannochloropsis oceanica)
GCCTGAAAGGCTGATGAAAGCTTCTTTTGTACGAGCCAGAGCTCAAAAAA
GCCCCGAATGGCATGTCTTTATCAGCACCACACGCATCCAAGCATATCAA
CCCCGCCATAGCATGGGCAAGCGGTGGACTTGGTGTCGGTCAAATTTTGC
CTGCTCGCCGACGCGCCGACAGACGTTTCTTAGCGGGCGAGCACCCACGC
AGCAACGACGATCTAATCTCAAACCCACAGCCTGACAATTACAGCGCATG
GGACGCTGGGTCCGGGTTCTCGTCCACGTGCTCCTCTTCCTCATAGTCGT
TGCAATCCCTGTGTCTGGCTTTGTCGTAGGTCTGCACCAGTCAACGAGGT
GAGTCTATCATGATCGTTATCGCATTCCCTCAGCCTCCCAGCCTTTTCAT
AATATATATGGTGTCTCAACGAAGAGAAGTGATATAAAATAAGGACGTCA
GAGCTCTTCTCTTTATGGCGCGATCGCATGTCTTTTTATTTACGCACATC
TTGATCCCAAGGTCTAGTGGCAGGAGGTTGAATTGGATGCGTCTGTAAAC
CCGGAAAAGCCAACGTAATTTAGTAAGACGCGTCAAGTCAAGTCGTGTAG
TGCACCAGCATGCTGCGAAGAATGTTGTTCGTCATACCCTGAGCTTGTCT
CTCCATAATGTTCTTCACCAAACACACAGACCTTTCCCATCGTTGCCCGC
ACGCGTTGTATATAGTAAACCCCACGCCATCGTCATGGGCAACCTCTTCT
CCCTCATATCCGGGCCATCTCTCGATACATTCCTTAACGGCAAAGTAATC
TGGATCACTGGTGCTTCTAGTGGCTTGGGAAGAGCCTTGGCAATCGAAGC
CGCTCGTCGGGGCGCCCGCGTTGTTCTTAGCGCGCGTCGCGTCGACAAGC
TGGAGGACGTCAAGAAACAATGCCTTGCTGTCGCAGTACCCCCATTATCC
TCACCTTCATCTTCCACCACGACTTCCAAGCGTGTGCTTGTCCAACCCCT
CGACATGGCTCGGTACGACGACCCGAGCTTTGCAGCCGCCGTCGCCCACG
TTAGCGCCATCATGGGCGGACTCGATATCTTAATCAACAACGCAGGGGTG
TCTACCCGCAGCAGTGCCGCAGACACCTCCCTCTCTGTCGACCTTTCTGT
CATGGCAAGCAATTTCTTCGGCCCAGTGGCACTTACCAAACTTTCCCTTC
CCCTCCTCCGTCAAAGCCCCTCCCATGCCCCCCATCTCATCGTCGTCAAC
AGCGTGCAAGGGAAATTCGGATTAGGCCTCCGCACGTCCTACTCGGCGTC
CAAGCATGCCTTGACCGGCTACTTCGACTCCCTCCGCGCAGAACTATCCG
CTGAGGCCATCCCCGTTACGGCTATTTTCCCCGGCTACATAAAAACGGAT
CTATCATTGAATGCTTTGACAGGGCAAGGAGAAAAACACGGACAAATGGA
CGAAACCACCGCGAAAGGGCTTGACCCTTCCGACTTGGCCTTGAAGATTT
TCAAGGCAGCAGCCGCGGGGAAAAAGGAGGCGGTGTATGCGCCAGTCGAT
GCCAGGGTGGCGATCTGGATGAGAAATGTAATGCCGGATTTGGTATTCAG
CATATTAGGGAGTAAAGCCCGGAAGGCTCTGGGGGTGGGAAAGATAGAGG
GGAAGAAGGAGGATTGATTGATTGAAAACTAGAAAACAACAAGAGTTGCT
TATGGTGGGG
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Coding sequence (CDS) from alignment at chr11:897169..898878+

>NO11G02850.1 ID=NO11G02850.1|Name=NO11G02850.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr11:897169..898878+ (Nannochloropsis oceanica)
ATGGGACGCTGGGTCCGGGTTCTCGTCCACGTGCTCCTCTTCCTCATAGT
CGTTGCAATCCCTGTGTCTGGCTTTGTCGTAGGTCTGCACCAGTCAACGA
GACCTTTCCCATCGTTGCCCGCACGCGTTGTATATAGTAAACCCCACGCC
ATCGTCATGGGCAACCTCTTCTCCCTCATATCCGGGCCATCTCTCGATAC
ATTCCTTAACGGCAAAGTAATCTGGATCACTGGTGCTTCTAGTGGCTTGG
GAAGAGCCTTGGCAATCGAAGCCGCTCGTCGGGGCGCCCGCGTTGTTCTT
AGCGCGCGTCGCGTCGACAAGCTGGAGGACGTCAAGAAACAATGCCTTGC
TGTCGCAGTACCCCCATTATCCTCACCTTCATCTTCCACCACGACTTCCA
AGCGTGTGCTTGTCCAACCCCTCGACATGGCTCGGTACGACGACCCGAGC
TTTGCAGCCGCCGTCGCCCACGTTAGCGCCATCATGGGCGGACTCGATAT
CTTAATCAACAACGCAGGGGTGTCTACCCGCAGCAGTGCCGCAGACACCT
CCCTCTCTGTCGACCTTTCTGTCATGGCAAGCAATTTCTTCGGCCCAGTG
GCACTTACCAAACTTTCCCTTCCCCTCCTCCGTCAAAGCCCCTCCCATGC
CCCCCATCTCATCGTCGTCAACAGCGTGCAAGGGAAATTCGGATTAGGCC
TCCGCACGTCCTACTCGGCGTCCAAGCATGCCTTGACCGGCTACTTCGAC
TCCCTCCGCGCAGAACTATCCGCTGAGGCCATCCCCGTTACGGCTATTTT
CCCCGGCTACATAAAAACGGATCTATCATTGAATGCTTTGACAGGGCAAG
GAGAAAAACACGGACAAATGGACGAAACCACCGCGAAAGGGCTTGACCCT
TCCGACTTGGCCTTGAAGATTTTCAAGGCAGCAGCCGCGGGGAAAAAGGA
GGCGGTGTATGCGCCAGTCGATGCCAGGGTGGCGATCTGGATGAGAAATG
TAATGCCGGATTTGGTATTCAGCATATTAGGGAGTAAAGCCCGGAAGGCT
CTGGGGGTGGGAAAGATAGAGGGGAAGAAGGAGGATTGA
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Synonyms
Publications