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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:895180..897125 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02840.1 vs.
Match: EWM24964.1 (ca2 :cation antiporter family [Nannochloropsis gaditana]) HSP 1 Score: 799.3 bits (2063), Expect = 8.500e-228 Identity = 430/615 (69.92%), Postives = 494/615 (80.33%), Query Frame = 0
Query: 1 MGSGIFIDPKTLPHDAGGAIQLFFLLAIYGKILMDASHMISEGSELLLLVPALAGVVGSVVLPVLGAVPDGAIVLFSGMGEDAQEELTIGVGALAGSTIMLLTIPWFLSVVGGRVHIDPTTGLALYKRPHGASKTWSKIPTKLNLKYNGVGILPSIRTMALILILSAGNYLIIQIPAFIYASDPSVHELANDERPWALFGLVTTVMSFTLYLLYQWKISGSDELKNDKIAEITVKNIHSGKISLLGAFGPEFEQALREHHALRQYSIEGRVGEVEGGRVGAEIDLSVSGNRAGLLSPENYGSVSDQDMQSEKHLLKAAVMERLKQICRPFFYRYDRDFTGTLDKSEVSQLFADLGEVPDGEELDGFWEKYDKDKDGNLDFIEFLELVIDHSLKVLHDGHPSGRRESCRSLDRWEEGV----EGEERRVGSTRREEDEDAEEEIPEDLKDLPWEMQQSRLKRRSLYMMAVGTMMILVFSDPLIGVLSEVGKRTGIPAFYISFVLSPLVSNGAEVLAAYAYSQRRSSKTISISLSTLMGAALMNATFVLFIFLLLIYVKRLAWTFSAETIAILVVQSVVGLMALSKSQNLWSALLILGLYPFSLGLVYVLENILGFD 612
M SG+FIDP TLP DAGGA+QL FLL +YGKILMD+S MISEGSELLLLVP+LAGVVGSVVLPVLGAVPDGAIVLFSGMG++AQEELT+GVGALAGSTIMLLTIPW LS++GGRV++DP +G ALYKRP GASK WSK+PTK ++KYNG+GILP +R ALI++ SA N+LIIQIPAF+YA+D S LA DERPWA GL TT +SF LYLLYQW+ + SDELKNDKIAEIT+KNI GK+SLLGA GPEFE+A+REHHALR+ S GR EG GA A L YGS++D + LKA+VMERL ICRPFF+RYD D TGTLD+ E+ QLFADLGE P EE WE+YD+D DG L+F EFL+LVIDH++ VLH+GH RR S R EEGV G +V + E+E+ EEEIPEDLKDLPWE QQSRL RR+ YMMA GT++ILVF+DPLIGVLSEVG RTGIPAFY+SFVLSPLVSNGAEVLAAY+Y+Q++SSKTISISL+TLMGAA+MNATFVLFIFLLLIYVKRLAWTFSAET+AIL VQ VVGL+ALSK Q+LW AL IL LYP SL LVYV+ENIL FD
Sbjct: 1 MTSGLFIDPTTLPSDAGGAVQLLFLLLVYGKILMDSSSMISEGSELLLLVPSLAGVVGSVVLPVLGAVPDGAIVLFSGMGDNAQEELTVGVGALAGSTIMLLTIPWCLSIIGGRVNLDPVSGEALYKRPSGASKYWSKVPTKWHMKYNGIGILPPVRMAALIMLWSAANFLIIQIPAFVYAADVSTAALAEDERPWAGLGLATTALSFVLYLLYQWRTANSDELKNDKIAEITLKNISRGKLSLLGALGPEFEEAIREHHALRRCSWRGRRENSEGMETGAS---------AALPLASEYGSLADD--SRDLRPLKASVMERLVFICRPFFHRYDWDMTGTLDRGEIWQLFADLGEAPGPEEFRELWEEYDRDGDGQLNFQEFLDLVIDHAMSVLHEGHHHERRSSWRG----EEGVGRKQAGPVHKVEAEAEAEEEEEEEEIPEDLKDLPWETQQSRLMRRAFYMMAEGTLLILVFADPLIGVLSEVGARTGIPAFYVSFVLSPLVSNGAEVLAAYSYAQKKSSKTISISLATLMGAAVMNATFVLFIFLLLIYVKRLAWTFSAETVAILFVQIVVGLLALSKRQSLWHALFILFLYPVSLVLVYVMENILRFD 600
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02840.1 ID=NO11G02840.1|Name=NO11G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1836bp
ATGGGCAGCGGCATCTTCATTGACCCTAAGACTCTGCCGCATGATGCGGG
TGGCGCCATCCAGCTCTTCTTTCTCTTGGCGATATACGGCAAGATTCTCA
TGGACGCCAGCCACATGATCAGTGAGGGTTCAGAACTGCTTCTGCTTGTT
CCTGCCCTTGCTGGCGTAGTGGGCTCTGTCGTCCTGCCCGTCCTGGGTGC
CGTGCCCGACGGGGCCATCGTGCTGTTCAGCGGTATGGGCGAGGATGCCC
AAGAAGAATTGACCATCGGTGTGGGTGCCTTGGCTGGCTCCACCATAATG
TTGCTGACTATACCCTGGTTCCTCTCTGTTGTTGGCGGCCGTGTTCACAT
TGACCCTACGACGGGTTTGGCCCTCTATAAACGCCCGCATGGCGCGTCCA
AGACTTGGAGCAAAATACCCACAAAGCTCAATTTGAAATACAATGGTGTT
GGAATCCTTCCTTCCATTCGCACCATGGCTTTGATCTTGATCTTGAGTGC
TGGAAACTACTTAATCATTCAGATCCCGGCTTTTATATACGCTTCCGACC
CTTCCGTCCACGAGCTGGCCAACGACGAAAGGCCGTGGGCGCTGTTTGGT
CTCGTGACAACCGTTATGTCATTCACGCTTTATCTGCTATATCAATGGAA
AATTTCGGGTTCGGATGAATTGAAAAACGACAAAATTGCCGAAATTACCG
TCAAGAACATCCACAGCGGCAAGATAAGTTTGCTCGGTGCTTTTGGACCT
GAATTTGAGCAAGCGCTGAGGGAGCACCACGCGTTGCGACAATACTCGAT
AGAGGGAAGGGTCGGCGAAGTAGAAGGGGGCAGGGTCGGGGCAGAGATTG
ACTTGAGCGTGAGTGGGAATCGGGCAGGCTTGCTATCGCCGGAGAATTAT
GGGAGTGTAAGTGATCAGGATATGCAGAGCGAGAAACACCTCCTGAAAGC
TGCAGTGATGGAACGACTTAAACAGATTTGTCGCCCGTTTTTTTACCGTT
ACGACCGAGACTTCACTGGGACATTGGATAAAAGTGAAGTGAGCCAGTTG
TTCGCTGATTTGGGGGAAGTGCCTGACGGGGAGGAGCTGGATGGGTTTTG
GGAGAAGTATGATAAGGATAAGGACGGAAATTTGGATTTCATTGAGTTTT
TGGAGTTAGTGATAGATCATTCGTTAAAGGTGCTCCATGACGGGCATCCA
TCGGGGAGGAGGGAGTCCTGTCGGAGTTTGGACAGATGGGAAGAGGGGGT
CGAGGGGGAAGAAAGGAGGGTGGGGAGCACTAGGAGGGAGGAAGATGAGG
ATGCGGAGGAGGAGATACCGGAAGATTTGAAAGATTTGCCGTGGGAGATG
CAGCAGTCGAGGTTGAAGAGACGGAGTCTATACATGATGGCAGTGGGGAC
GATGATGATTTTGGTCTTTTCAGACCCGTTGATTGGGGTGTTGTCGGAGG
TCGGGAAACGGACCGGAATACCGGCATTTTACATCTCATTTGTTTTGTCG
CCGTTAGTAAGCAATGGCGCGGAGGTGCTGGCGGCCTACGCATACAGCCA
GAGGAGGAGTAGTAAGACGATCTCGATCAGTCTGAGCACATTGATGGGTG
CTGCTTTGATGAACGCGACATTTGTCCTTTTTATTTTCTTGTTGCTGATT
TATGTGAAGCGATTGGCGTGGACCTTCAGTGCGGAGACAATTGCGATTTT
GGTCGTGCAGAGTGTTGTGGGCTTGATGGCACTGAGCAAAAGCCAGAATC
TGTGGAGTGCTTTGCTTATATTGGGGCTGTACCCTTTTTCTCTGGGGCTT
GTTTATGTGTTGGAAAATATACTAGGCTTTGATTAG back to topprotein sequence of NO11G02840.1 >NO11G02840.1-protein ID=NO11G02840.1-protein|Name=NO11G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=612bp
MGSGIFIDPKTLPHDAGGAIQLFFLLAIYGKILMDASHMISEGSELLLLV
PALAGVVGSVVLPVLGAVPDGAIVLFSGMGEDAQEELTIGVGALAGSTIM
LLTIPWFLSVVGGRVHIDPTTGLALYKRPHGASKTWSKIPTKLNLKYNGV
GILPSIRTMALILILSAGNYLIIQIPAFIYASDPSVHELANDERPWALFG
LVTTVMSFTLYLLYQWKISGSDELKNDKIAEITVKNIHSGKISLLGAFGP
EFEQALREHHALRQYSIEGRVGEVEGGRVGAEIDLSVSGNRAGLLSPENY
GSVSDQDMQSEKHLLKAAVMERLKQICRPFFYRYDRDFTGTLDKSEVSQL
FADLGEVPDGEELDGFWEKYDKDKDGNLDFIEFLELVIDHSLKVLHDGHP
SGRRESCRSLDRWEEGVEGEERRVGSTRREEDEDAEEEIPEDLKDLPWEM
QQSRLKRRSLYMMAVGTMMILVFSDPLIGVLSEVGKRTGIPAFYISFVLS
PLVSNGAEVLAAYAYSQRRSSKTISISLSTLMGAALMNATFVLFIFLLLI
YVKRLAWTFSAETIAILVVQSVVGLMALSKSQNLWSALLILGLYPFSLGL
VYVLENILGFD* back to topmRNA from alignment at chr11:895180..897125- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02840.1 ID=NO11G02840.1|Name=NO11G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1946bp|location=Sequence derived from alignment at chr11:895180..897125- (Nannochloropsis oceanica)
ATGGGCAGCGGCATCTTCATTGACCCTAAGACTCTGCCGCATGATGCGGG
TGGCGCCATCCAGCTCTTCTTTCTCTTGGCGATATACGGCAAGATTCTCA
TGGACGCCAGCCACATGATCAGTGAGGGTTCAGAACTGCTTCTGCTTGTT
CCTGCCCTTGCTGGCGTAGTGGGCTCTGTCGTCCTGCCCGTCCTGGGTGC
CGTGCCCGACGGGGCCATCGTGCTGTTCAGCGGTATGGGCGAGGATGCCC
AAGAAGAATTGACCATCGGTGTGGGTGCCTTGGCTGGCTCCACCATAATG
TTGCTGACTATACCCTGGTTCCTCTCTGTTGTTGGCGGCCGTGTTCACAT
TGACCCTACGACGGGTTTGGCCCTCTATAAACGCCCGCATGGCGCGTCCA
AGACTTGGAGCAAAATACCCACAAAGCTCAATTTGAAATACAATGGTGTT
GGAATCCTTCCTTCCATTCGCACCATGGCTTTGATCTTGATCTTGAGGTA
AGCAAGCGTTCTTTCCTACCAGCCCTCCCTCCTTCATTCCCTGTACACTC
ACATCTCCTCCCCCCCCTTTCACTATCAAACCCTCCCTTTCCTCCTTCCT
CTCTCAGTGCTGGAAACTACTTAATCATTCAGATCCCGGCTTTTATATAC
GCTTCCGACCCTTCCGTCCACGAGCTGGCCAACGACGAAAGGCCGTGGGC
GCTGTTTGGTCTCGTGACAACCGTTATGTCATTCACGCTTTATCTGCTAT
ATCAATGGAAAATTTCGGGTTCGGATGAATTGAAAAACGACAAAATTGCC
GAAATTACCGTCAAGAACATCCACAGCGGCAAGATAAGTTTGCTCGGTGC
TTTTGGACCTGAATTTGAGCAAGCGCTGAGGGAGCACCACGCGTTGCGAC
AATACTCGATAGAGGGAAGGGTCGGCGAAGTAGAAGGGGGCAGGGTCGGG
GCAGAGATTGACTTGAGCGTGAGTGGGAATCGGGCAGGCTTGCTATCGCC
GGAGAATTATGGGAGTGTAAGTGATCAGGATATGCAGAGCGAGAAACACC
TCCTGAAAGCTGCAGTGATGGAACGACTTAAACAGATTTGTCGCCCGTTT
TTTTACCGTTACGACCGAGACTTCACTGGGACATTGGATAAAAGTGAAGT
GAGCCAGTTGTTCGCTGATTTGGGGGAAGTGCCTGACGGGGAGGAGCTGG
ATGGGTTTTGGGAGAAGTATGATAAGGATAAGGACGGAAATTTGGATTTC
ATTGAGTTTTTGGAGTTAGTGATAGATCATTCGTTAAAGGTGCTCCATGA
CGGGCATCCATCGGGGAGGAGGGAGTCCTGTCGGAGTTTGGACAGATGGG
AAGAGGGGGTCGAGGGGGAAGAAAGGAGGGTGGGGAGCACTAGGAGGGAG
GAAGATGAGGATGCGGAGGAGGAGATACCGGAAGATTTGAAAGATTTGCC
GTGGGAGATGCAGCAGTCGAGGTTGAAGAGACGGAGTCTATACATGATGG
CAGTGGGGACGATGATGATTTTGGTCTTTTCAGACCCGTTGATTGGGGTG
TTGTCGGAGGTCGGGAAACGGACCGGAATACCGGCATTTTACATCTCATT
TGTTTTGTCGCCGTTAGTAAGCAATGGCGCGGAGGTGCTGGCGGCCTACG
CATACAGCCAGAGGAGGAGTAGTAAGACGATCTCGATCAGTCTGAGCACA
TTGATGGGTGCTGCTTTGATGAACGCGACATTTGTCCTTTTTATTTTCTT
GTTGCTGATTTATGTGAAGCGATTGGCGTGGACCTTCAGTGCGGAGACAA
TTGCGATTTTGGTCGTGCAGAGTGTTGTGGGCTTGATGGCACTGAGCAAA
AGCCAGAATCTGTGGAGTGCTTTGCTTATATTGGGGCTGTACCCTTTTTC
TCTGGGGCTTGTTTATGTGTTGGAAAATATACTAGGCTTTGATTAG back to topCoding sequence (CDS) from alignment at chr11:895180..897125- >NO11G02840.1 ID=NO11G02840.1|Name=NO11G02840.1|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at chr11:895180..897125- (Nannochloropsis oceanica)
ATGGGCAGCGGCATCTTCATTGACCCTAAGACTCTGCCGCATGATGCGGG
TGGCGCCATCCAGCTCTTCTTTCTCTTGGCGATATACGGCAAGATTCTCA
TGGACGCCAGCCACATGATCAGTGAGGGTTCAGAACTGCTTCTGCTTGTT
CCTGCCCTTGCTGGCGTAGTGGGCTCTGTCGTCCTGCCCGTCCTGGGTGC
CGTGCCCGACGGGGCCATCGTGCTGTTCAGCGGTATGGGCGAGGATGCCC
AAGAAGAATTGACCATCGGTGTGGGTGCCTTGGCTGGCTCCACCATAATG
TTGCTGACTATACCCTGGTTCCTCTCTGTTGTTGGCGGCCGTGTTCACAT
TGACCCTACGACGGGTTTGGCCCTCTATAAACGCCCGCATGGCGCGTCCA
AGACTTGGAGCAAAATACCCACAAAGCTCAATTTGAAATACAATGGTGTT
GGAATCCTTCCTTCCATTCGCACCATGGCTTTGATCTTGATCTTGAGTGC
TGGAAACTACTTAATCATTCAGATCCCGGCTTTTATATACGCTTCCGACC
CTTCCGTCCACGAGCTGGCCAACGACGAAAGGCCGTGGGCGCTGTTTGGT
CTCGTGACAACCGTTATGTCATTCACGCTTTATCTGCTATATCAATGGAA
AATTTCGGGTTCGGATGAATTGAAAAACGACAAAATTGCCGAAATTACCG
TCAAGAACATCCACAGCGGCAAGATAAGTTTGCTCGGTGCTTTTGGACCT
GAATTTGAGCAAGCGCTGAGGGAGCACCACGCGTTGCGACAATACTCGAT
AGAGGGAAGGGTCGGCGAAGTAGAAGGGGGCAGGGTCGGGGCAGAGATTG
ACTTGAGCGTGAGTGGGAATCGGGCAGGCTTGCTATCGCCGGAGAATTAT
GGGAGTGTAAGTGATCAGGATATGCAGAGCGAGAAACACCTCCTGAAAGC
TGCAGTGATGGAACGACTTAAACAGATTTGTCGCCCGTTTTTTTACCGTT
ACGACCGAGACTTCACTGGGACATTGGATAAAAGTGAAGTGAGCCAGTTG
TTCGCTGATTTGGGGGAAGTGCCTGACGGGGAGGAGCTGGATGGGTTTTG
GGAGAAGTATGATAAGGATAAGGACGGAAATTTGGATTTCATTGAGTTTT
TGGAGTTAGTGATAGATCATTCGTTAAAGGTGCTCCATGACGGGCATCCA
TCGGGGAGGAGGGAGTCCTGTCGGAGTTTGGACAGATGGGAAGAGGGGGT
CGAGGGGGAAGAAAGGAGGGTGGGGAGCACTAGGAGGGAGGAAGATGAGG
ATGCGGAGGAGGAGATACCGGAAGATTTGAAAGATTTGCCGTGGGAGATG
CAGCAGTCGAGGTTGAAGAGACGGAGTCTATACATGATGGCAGTGGGGAC
GATGATGATTTTGGTCTTTTCAGACCCGTTGATTGGGGTGTTGTCGGAGG
TCGGGAAACGGACCGGAATACCGGCATTTTACATCTCATTTGTTTTGTCG
CCGTTAGTAAGCAATGGCGCGGAGGTGCTGGCGGCCTACGCATACAGCCA
GAGGAGGAGTAGTAAGACGATCTCGATCAGTCTGAGCACATTGATGGGTG
CTGCTTTGATGAACGCGACATTTGTCCTTTTTATTTTCTTGTTGCTGATT
TATGTGAAGCGATTGGCGTGGACCTTCAGTGCGGAGACAATTGCGATTTT
GGTCGTGCAGAGTGTTGTGGGCTTGATGGCACTGAGCAAAAGCCAGAATC
TGTGGAGTGCTTTGCTTATATTGGGGCTGTACCCTTTTTCTCTGGGGCTT
GTTTATGTGTTGGAAAATATACTAGGCTTTGATTAG back to top
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