NO11G02830.1, NO11G02830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02830.1
Unique NameNO11G02830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1401
Alignment locationchr11:893401..894801 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:893401..894801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02830.1 vs.
Match: WP_068121101.1 (hypothetical protein [Rhodothermaceae bacterium RA]; ARA92158.1 hypothetical protein AWN76_002535 [Rhodothermaceae bacterium RA])

HSP 1 Score: 79.0 bits (193), Expect = 4.500e-11
Identity = 75/239 (31.38%), Postives = 99/239 (41.42%), Query Frame = 0 
Query:  211 SRGHLVLDFLADPDPNLLPMTYAQSLASLAGKEGGSRTPAALKACEFAGYNLLVGNVGRSAQEGGEEEEVEMAYYSNCLLPGQAQKLEDNRLYAISNRLLDVPWAKVQRGKRLFTECLTEGALAAAAVEKGGEGREDEDEVLAHLLLDRLLHDNEPC--SPATDTGYPLEFEKKLAQICIPGVALRGEEEEGKEGKDGGEKGRERSSSVFGTTASIVVLVRRDGRMLFYERGLEWDEAR 448
            SRGHLV  FL     +  P TY ++LA               +A  + G+NLLVG               EMAY SN    G  Q++    +Y +SN  LD PW KV+ GK + T+ L +   A               E LA  LLDR LHD  P       DTG  L +E+ L+ + I                          S  +GT A+ V+L+  DG++LF ER    D AR
Sbjct:   82 SRGHLVSGFLIG---SAAPQTYLEALAG--------------EAEAYNGFNLLVGT------------PAEMAYVSN--RGGGVQRIPPG-VYGLSNHRLDTPWPKVRAGKAMLTDALQQDGAA--------------PERLARSLLDR-LHDPTPAPEEALPDTGVGLAWERLLSPMHI-------------------------VSPTYGTRAASVLLIGHDGQVLFAERTYGPDGAR 248
The following BLAST results are available for this feature:
BLAST of NO11G02830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_068121101.14.500e-1131.38hypothetical protein [Rhodothermaceae bacterium RA... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02830NO11G02830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02830.1NO11G02830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02830.1.cds1NO11G02830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02830.1 ID=NO11G02830.1|Name=NO11G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp
ATGTGTATTGTCTTCTTTCAAGCCTTCTCAACACCAGCAACAGTAGGAGT
ATCTACGGAAAGAACAGCAACATCGACAGAAATAGCAGCATCAGCGACAG
AAACAACAGCAGCAGGCAGCCAGGACGTGCATGCCGCTATTGCAAGGAGT
TACAAGCTCATCCTCGCCTCCAATCGTGACGAATTTCTCGTGCGCCCGAC
CCGTCGACCGCGCTTCTGGGATGACACCGACGGCGTGAACAATACGAGCA
CCAAGAATGAGGAAAAAAAAGGGGTGATGGTCGCACAGATGGAAAAGCCT
CATGTTGACGCACGCACAAACAGCAATACTACCACCGCGTTGTCCTCGTC
TTTCTCTCCATTTTCGCGCGTGTGGGCCGGAAAAGATTTGTTGGCGGGAG
GGACCTGGATGGGAATTACAAGGACAGGACGCTTTGGAGTGTTGACAAAC
GTCAGAACACCCACAGAAGATCTCTTAGCTGCCGCAGCAGCAAAAGTAAC
AGCAACAGCAACAGCACCGACAACAAAAGCAACAAAATTATCGGAGACAA
GGGCAGTTAGTTCGATTCCTGTGCAGCAGGGGAAGGAAGAGGAGAAAGAC
AAGGCGAAGGAGACAAATTTCGGAAGAAAAAGTCGAGGGCACTTGGTCTT
AGATTTCCTCGCTGACCCGGATCCCAACCTCTTGCCGATGACGTACGCTC
AAAGCCTAGCGTCTCTGGCCGGAAAGGAGGGCGGGTCGAGGACACCAGCA
GCATTAAAGGCATGTGAGTTTGCAGGCTACAACCTTCTGGTGGGCAATGT
GGGACGATCTGCACAAGAAGGAGGGGAAGAAGAAGAAGTGGAAATGGCCT
ACTACTCTAACTGCCTCCTCCCGGGGCAAGCCCAAAAACTGGAAGACAAT
CGTTTATATGCGATCAGCAACCGCTTGCTTGACGTACCCTGGGCAAAGGT
ACAAAGGGGAAAGAGGCTCTTCACTGAGTGTCTGACCGAGGGGGCACTGG
CAGCAGCAGCCGTGGAAAAGGGCGGGGAAGGGAGGGAGGATGAGGATGAG
GTGCTTGCTCATTTGTTACTAGATCGATTGCTGCATGATAACGAGCCTTG
CAGCCCAGCGACGGACACAGGATACCCTCTAGAATTTGAGAAGAAGCTTG
CCCAGATTTGTATTCCGGGGGTGGCATTACGGGGGGAGGAGGAGGAGGGG
AAGGAGGGAAAGGATGGAGGGGAAAAGGGGAGGGAAAGGTCGTCGTCAGT
GTTTGGCACGACGGCAAGTATTGTAGTGTTGGTGAGAAGAGATGGGCGGA
TGTTGTTTTACGAAAGGGGTTTAGAATGGGATGAGGCGAGGGAGACTCAT
GTGGGTGTCTGGTCGAGTGTCAGAAGGACGGAGGTGAAGCTCGCTTCTTG
A
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protein sequence of NO11G02830.1

>NO11G02830.1-protein ID=NO11G02830.1-protein|Name=NO11G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MCIVFFQAFSTPATVGVSTERTATSTEIAASATETTAAGSQDVHAAIARS
YKLILASNRDEFLVRPTRRPRFWDDTDGVNNTSTKNEEKKGVMVAQMEKP
HVDARTNSNTTTALSSSFSPFSRVWAGKDLLAGGTWMGITRTGRFGVLTN
VRTPTEDLLAAAAAKVTATATAPTTKATKLSETRAVSSIPVQQGKEEEKD
KAKETNFGRKSRGHLVLDFLADPDPNLLPMTYAQSLASLAGKEGGSRTPA
ALKACEFAGYNLLVGNVGRSAQEGGEEEEVEMAYYSNCLLPGQAQKLEDN
RLYAISNRLLDVPWAKVQRGKRLFTECLTEGALAAAAVEKGGEGREDEDE
VLAHLLLDRLLHDNEPCSPATDTGYPLEFEKKLAQICIPGVALRGEEEEG
KEGKDGGEKGRERSSSVFGTTASIVVLVRRDGRMLFYERGLEWDEARETH
VGVWSSVRRTEVKLAS*
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mRNA from alignment at chr11:893401..894801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02830.1 ID=NO11G02830.1|Name=NO11G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp|location=Sequence derived from alignment at chr11:893401..894801- (Nannochloropsis oceanica)
ATGTGTATTGTCTTCTTTCAAGCCTTCTCAACACCAGCAACAGTAGGAGT
ATCTACGGAAAGAACAGCAACATCGACAGAAATAGCAGCATCAGCGACAG
AAACAACAGCAGCAGGCAGCCAGGACGTGCATGCCGCTATTGCAAGGAGT
TACAAGCTCATCCTCGCCTCCAATCGTGACGAATTTCTCGTGCGCCCGAC
CCGTCGACCGCGCTTCTGGGATGACACCGACGGCGTGAACAATACGAGCA
CCAAGAATGAGGAAAAAAAAGGGGTGATGGTCGCACAGATGGAAAAGCCT
CATGTTGACGCACGCACAAACAGCAATACTACCACCGCGTTGTCCTCGTC
TTTCTCTCCATTTTCGCGCGTGTGGGCCGGAAAAGATTTGTTGGCGGGAG
GGACCTGGATGGGAATTACAAGGACAGGACGCTTTGGAGTGTTGACAAAC
GTCAGAACACCCACAGAAGATCTCTTAGCTGCCGCAGCAGCAAAAGTAAC
AGCAACAGCAACAGCACCGACAACAAAAGCAACAAAATTATCGGAGACAA
GGGCAGTTAGTTCGATTCCTGTGCAGCAGGGGAAGGAAGAGGAGAAAGAC
AAGGCGAAGGAGACAAATTTCGGAAGAAAAAGTCGAGGGCACTTGGTCTT
AGATTTCCTCGCTGACCCGGATCCCAACCTCTTGCCGATGACGTACGCTC
AAAGCCTAGCGTCTCTGGCCGGAAAGGAGGGCGGGTCGAGGACACCAGCA
GCATTAAAGGCATGTGAGTTTGCAGGCTACAACCTTCTGGTGGGCAATGT
GGGACGATCTGCACAAGAAGGAGGGGAAGAAGAAGAAGTGGAAATGGCCT
ACTACTCTAACTGCCTCCTCCCGGGGCAAGCCCAAAAACTGGAAGACAAT
CGTTTATATGCGATCAGCAACCGCTTGCTTGACGTACCCTGGGCAAAGGT
ACAAAGGGGAAAGAGGCTCTTCACTGAGTGTCTGACCGAGGGGGCACTGG
CAGCAGCAGCCGTGGAAAAGGGCGGGGAAGGGAGGGAGGATGAGGATGAG
GTGCTTGCTCATTTGTTACTAGATCGATTGCTGCATGATAACGAGCCTTG
CAGCCCAGCGACGGACACAGGATACCCTCTAGAATTTGAGAAGAAGCTTG
CCCAGATTTGTATTCCGGGGGTGGCATTACGGGGGGAGGAGGAGGAGGGG
AAGGAGGGAAAGGATGGAGGGGAAAAGGGGAGGGAAAGGTCGTCGTCAGT
GTTTGGCACGACGGCAAGTATTGTAGTGTTGGTGAGAAGAGATGGGCGGA
TGTTGTTTTACGAAAGGGGTTTAGAATGGGATGAGGCGAGGGAGACTCAT
GTGGGTGTCTGGTCGAGTGTCAGAAGGACGGAGGTGAAGCTCGCTTCTTG
A
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Coding sequence (CDS) from alignment at chr11:893401..894801-

>NO11G02830.1 ID=NO11G02830.1|Name=NO11G02830.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr11:893401..894801- (Nannochloropsis oceanica)
ATGTGTATTGTCTTCTTTCAAGCCTTCTCAACACCAGCAACAGTAGGAGT
ATCTACGGAAAGAACAGCAACATCGACAGAAATAGCAGCATCAGCGACAG
AAACAACAGCAGCAGGCAGCCAGGACGTGCATGCCGCTATTGCAAGGAGT
TACAAGCTCATCCTCGCCTCCAATCGTGACGAATTTCTCGTGCGCCCGAC
CCGTCGACCGCGCTTCTGGGATGACACCGACGGCGTGAACAATACGAGCA
CCAAGAATGAGGAAAAAAAAGGGGTGATGGTCGCACAGATGGAAAAGCCT
CATGTTGACGCACGCACAAACAGCAATACTACCACCGCGTTGTCCTCGTC
TTTCTCTCCATTTTCGCGCGTGTGGGCCGGAAAAGATTTGTTGGCGGGAG
GGACCTGGATGGGAATTACAAGGACAGGACGCTTTGGAGTGTTGACAAAC
GTCAGAACACCCACAGAAGATCTCTTAGCTGCCGCAGCAGCAAAAGTAAC
AGCAACAGCAACAGCACCGACAACAAAAGCAACAAAATTATCGGAGACAA
GGGCAGTTAGTTCGATTCCTGTGCAGCAGGGGAAGGAAGAGGAGAAAGAC
AAGGCGAAGGAGACAAATTTCGGAAGAAAAAGTCGAGGGCACTTGGTCTT
AGATTTCCTCGCTGACCCGGATCCCAACCTCTTGCCGATGACGTACGCTC
AAAGCCTAGCGTCTCTGGCCGGAAAGGAGGGCGGGTCGAGGACACCAGCA
GCATTAAAGGCATGTGAGTTTGCAGGCTACAACCTTCTGGTGGGCAATGT
GGGACGATCTGCACAAGAAGGAGGGGAAGAAGAAGAAGTGGAAATGGCCT
ACTACTCTAACTGCCTCCTCCCGGGGCAAGCCCAAAAACTGGAAGACAAT
CGTTTATATGCGATCAGCAACCGCTTGCTTGACGTACCCTGGGCAAAGGT
ACAAAGGGGAAAGAGGCTCTTCACTGAGTGTCTGACCGAGGGGGCACTGG
CAGCAGCAGCCGTGGAAAAGGGCGGGGAAGGGAGGGAGGATGAGGATGAG
GTGCTTGCTCATTTGTTACTAGATCGATTGCTGCATGATAACGAGCCTTG
CAGCCCAGCGACGGACACAGGATACCCTCTAGAATTTGAGAAGAAGCTTG
CCCAGATTTGTATTCCGGGGGTGGCATTACGGGGGGAGGAGGAGGAGGGG
AAGGAGGGAAAGGATGGAGGGGAAAAGGGGAGGGAAAGGTCGTCGTCAGT
GTTTGGCACGACGGCAAGTATTGTAGTGTTGGTGAGAAGAGATGGGCGGA
TGTTGTTTTACGAAAGGGGTTTAGAATGGGATGAGGCGAGGGAGACTCAT
GTGGGTGTCTGGTCGAGTGTCAGAAGGACGGAGGTGAAGCTCGCTTCTTG
A
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Synonyms
Publications