NO11G02730.1, NO11G02730.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02730.1
Unique NameNO11G02730.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2174
Alignment locationchr11:860534..862707 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:860534..862707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02730.1 vs.
Match: EWM24957.1 (Protein of unknown function DUF1415 [Nannochloropsis gaditana])

HSP 1 Score: 785.8 bits (2028), Expect = 1.100e-223
Identity = 436/660 (66.06%), Postives = 498/660 (75.45%), Query Frame = 0 
Query:   10 LPLLAAAATASTSIPRLAS-AFQAPVSSASKRTHPFSAAAAARRQQRQQRQSSPELKHTPLQATATSSGSSSSKLSDLQAWTAKWQAEQHQGAGPTPKATEYYHASLAEVLAEVFDQVLKAEKAEKGVPPPQHLLLFPDAESLYDGNLMRQFGDHLDLCKECCEIMGMSQNTIVMHPSTTIPALQCPVPAVLIKGIVQTSEEFPDDDPYWDDDDDSAFDFSALYNDDNGSPSAAAARELEKLYQVPEEDGPIMEGMKGWVDAIIADLGVCPFTVNAAKAGLPQGAIRYFIDRSVSPEEIYSKYWKEVALISKDSKETQDERSLSTTLLITPNFGLRNREFFETFSNTLTQPLEALGLEDEIQLVFFHPEWVFRDGADRMGQDDAANYARRSPWPMINILRTPQVKKAQKAIPTGLVYRQNEVTLDKIGSGRLRRWLVERDWGEVKDNFRVDRKTVPILSTAQDLLLGLTPEALSEDAVAVAP-PMRDATEKA-ATTKEMVEKKQQEQFQKMMADEGVDEDKDEKGNIDIGEKESVASASAAAYSAAAAAKAAAANRRFFGGGFENEFGEAGEAAAAAAAAAAAAIGEDDDEDDWDKPLPQSQIYFMTENDPTRVKRPMGEIIQDSKAVLALLRKRLAQNVPLSPAEVHDFEERASRMRKD 667
            LP L      ST +P L S AFQ P  S S+  +        +         +  L+H+ LQA+  +  SS     DL+ W  +W+ ++ Q  G   KAT + H SLAEVLAEV+DQVLKAEKAEKG PPP+HLLLFP AE LYDG +MRQFGDHLDLCKECCE+MG+SQNTI MHPSTT PALQ PVPA+LIKGI    +EF +DDP+WDDDD+  FDFSALY +++G   A   RE EKLY+VPE DGP+M GM+ WVDA+IADLGVCPFTVNA KAGLPQGAIRY I+RS+SPEEIY KYW+EVALIS DS + QDERSLSTTLLITPNFGLRNREFFETFSNTLTQPLEALGLEDE+QLVFFHPEWVFRDGADRMGQDDAAN+ARRSPWPMINILRTPQV+KAQKAIPTGLVYRQNEVTLDKIGSGRLRRWLV RDWGEVKDNFRVDRKTVPILSTAQDLL GLTPEAL E+ V + P P   A E A A   +++E  Q  +  +    E +         +D+ E E  ASASA AYSAAAA++AAAANR+FFGGGFE+EF         AA   A   GE+DD DDWD+PL +S    + E  P R +RPMGEII+DSKAVLA+LRKRL Q +PLSPAEVH FEERA RM+ D
Sbjct:    5 LPFLLILGATSTPLPPLYSIAFQIP--SPSRPPYTLIKVVLDQHHPGHGHGRTAFLRHSALQASTGTPSSSPPSKVDLETWMEEWKDKRQQDGGGLAKATIFQHTSLAEVLAEVYDQVLKAEKAEKGAPPPEHLLLFPQAERLYDGQMMRQFGDHLDLCKECCEVMGVSQNTIAMHPSTTSPALQTPVPALLIKGIANAEDEF-EDDPFWDDDDEG-FDFSALYANEDGETDA---REQEKLYEVPEGDGPVMAGMREWVDAVIADLGVCPFTVNAGKAGLPQGAIRYEINRSMSPEEIYRKYWQEVALISTDSAQAQDERSLSTTLLITPNFGLRNREFFETFSNTLTQPLEALGLEDEVQLVFFHPEWVFRDGADRMGQDDAANFARRSPWPMINILRTPQVRKAQKAIPTGLVYRQNEVTLDKIGSGRLRRWLVTRDWGEVKDNFRVDRKTVPILSTAQDLLSGLTPEALKEEDVVLVPSPCPKAGEGAVAQEDDVLEGGQDVRLNEQTGGEDI--------GMDLDELEDTASASAVAYSAAAASEAAAANRQFFGGGFEDEF---------AALREAVRKGEEDD-DDWDQPLSES--LELLERGPHRARRPMGEIIEDSKAVLAMLRKRLGQRLPLSPAEVHSFEERAKRMQND 637
The following BLAST results are available for this feature:
BLAST of NO11G02730.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24957.11.100e-22366.06Protein of unknown function DUF1415 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02730NO11G02730Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02730.1NO11G02730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02730.1.cds1NO11G02730.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02730.1 ID=NO11G02730.1|Name=NO11G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2174bp
ACAGGCACAAGTACGACTATTATCCACGCAGCGCCTTGGTCCAACCAAAG
TGTCACAAGGATGATCATGAGGGTTTTCCTCTGCGTTCTTCCCCTCCTCG
CTGCAGCGGCAACCGCATCAACATCAATCCCTCGCCTTGCATCCGCCTTT
CAGGCCCCCGTCTCATCTGCCAGCAAGCGTACCCACCCCTTCTCTGCCGC
TGCAGCTGCACGACGACAGCAACGTCAACAGCGACAATCATCCCCCGAGC
TCAAGCACACTCCCTTGCAAGCAACTGCCACTAGCAGCGGTAGCAGCAGC
AGCAAGCTCTCAGACCTGCAAGCATGGACAGCAAAGTGGCAAGCGGAGCA
GCATCAAGGTGCAGGCCCTACTCCCAAGGCTACCGAATATTATCACGCGT
CGCTCGCGGAAGTACTGGCCGAGGTCTTTGACCAGGTTTTGAAAGCGGAG
AAGGCCGAGAAAGGCGTCCCTCCACCACAACACTTGCTTCTCTTCCCAGA
CGCGGAAAGCTTGTACGACGGGAATTTGATGCGACAATTCGGAGACCACT
TGGACCTGTGCAAGGAATGCTGCGAGATCATGGGAATGTCTCAAAATACA
ATTGTCATGCATCCTTCCACGACCATTCCGGCGTTGCAATGCCCCGTGCC
TGCTGTCTTGATTAAGGGCATCGTCCAAACGAGCGAGGAGTTTCCGGACG
ACGACCCATATTGGGACGACGATGACGATTCAGCATTTGACTTCTCCGCG
CTGTACAACGATGACAATGGTAGCCCCAGTGCAGCGGCTGCCAGGGAGCT
GGAGAAGCTGTATCAGGTCCCGGAGGAGGATGGGCCAATAATGGAAGGGA
TGAAGGGGTGGGTCGACGCAATCATTGCCGACCTGGGCGTGTGCCCTTTC
ACGGTAAATGCGGCCAAGGCCGGGTTACCACAGGGGGCGATTCGTTATTT
CATTGATCGGAGTGTATCGCCCGAGGAGATCTATAGCAAGTACTGGAAAG
AAGTGGCGTTGATTTCTAAGGACAGTAAAGAGACGCAAGATGAACGTAGT
TTGAGTACAACTCTTCTGATCACCCCTAACTTTGGCTTGAGAAACCGGGA
GTTTTTTGAGACATTTAGTAACACTCTGACTCAGCCATTGGAAGCCTTGG
GCTTGGAGGACGAGATCCAGCTGGTGTTTTTCCACCCCGAGTGGGTCTTC
CGCGATGGGGCGGACCGAATGGGCCAAGACGACGCCGCGAACTACGCTCG
GCGCTCGCCCTGGCCGATGATCAACATCCTGCGGACGCCGCAAGTCAAAA
AGGCCCAGAAGGCGATCCCGACGGGCTTGGTGTACCGGCAAAACGAGGTG
ACCCTCGACAAGATCGGCAGTGGGCGTTTGCGGAGATGGTTGGTTGAACG
GGACTGGGGGGAGGTGAAGGACAATTTCCGTGTGGACCGGAAGACGGTGC
CTATTCTTTCGACAGCCCAGGATTTGCTACTGGGTCTGACTCCTGAGGCT
CTGAGTGAGGATGCGGTGGCCGTGGCTCCCCCAATGCGTGACGCAACGGA
AAAGGCAGCCACAACCAAGGAGATGGTGGAGAAGAAGCAGCAAGAGCAAT
TTCAGAAAATGATGGCGGATGAAGGGGTGGACGAGGACAAGGACGAGAAG
GGAAATATTGATATTGGTGAGAAGGAGAGCGTGGCATCGGCCTCGGCTGC
TGCCTATTCGGCCGCCGCCGCCGCCAAGGCCGCTGCGGCAAATCGTCGTT
TTTTTGGGGGGGGTTTTGAGAACGAGTTCGGGGAGGCCGGAGAAGCAGCG
GCGGCGGCGGCAGCAGCAGCGGCAGCAGCGATAGGGGAGGACGATGATGA
GGATGATTGGGATAAACCCCTTCCGCAGTCACAAATATATTTTATGACAG
AAAATGATCCGACGAGGGTTAAGCGACCGATGGGAGAGATCATTCAGGAC
TCTAAGGCGGTCCTGGCGTTGTTGAGGAAAAGACTAGCACAGAACGTGCC
TTTGTCTCCTGCAGAAGTGCATGACTTTGAAGAGAGGGCGTCAAGGATGA
GGAAGGATTAGAAAGAGAGAGGAAGGGAAGGGGGAAAGTTAGAGAGGGTG
TTTTAAGATGACCTCTCTCTGCTCTCGATCATTAAGTGATGAAGGAAACG
AAAGAACCGCAATTTATTAAGGAC
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protein sequence of NO11G02730.1

>NO11G02730.1-protein ID=NO11G02730.1-protein|Name=NO11G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=667bp
MIMRVFLCVLPLLAAAATASTSIPRLASAFQAPVSSASKRTHPFSAAAAA
RRQQRQQRQSSPELKHTPLQATATSSGSSSSKLSDLQAWTAKWQAEQHQG
AGPTPKATEYYHASLAEVLAEVFDQVLKAEKAEKGVPPPQHLLLFPDAES
LYDGNLMRQFGDHLDLCKECCEIMGMSQNTIVMHPSTTIPALQCPVPAVL
IKGIVQTSEEFPDDDPYWDDDDDSAFDFSALYNDDNGSPSAAAARELEKL
YQVPEEDGPIMEGMKGWVDAIIADLGVCPFTVNAAKAGLPQGAIRYFIDR
SVSPEEIYSKYWKEVALISKDSKETQDERSLSTTLLITPNFGLRNREFFE
TFSNTLTQPLEALGLEDEIQLVFFHPEWVFRDGADRMGQDDAANYARRSP
WPMINILRTPQVKKAQKAIPTGLVYRQNEVTLDKIGSGRLRRWLVERDWG
EVKDNFRVDRKTVPILSTAQDLLLGLTPEALSEDAVAVAPPMRDATEKAA
TTKEMVEKKQQEQFQKMMADEGVDEDKDEKGNIDIGEKESVASASAAAYS
AAAAAKAAAANRRFFGGGFENEFGEAGEAAAAAAAAAAAAIGEDDDEDDW
DKPLPQSQIYFMTENDPTRVKRPMGEIIQDSKAVLALLRKRLAQNVPLSP
AEVHDFEERASRMRKD*
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mRNA from alignment at chr11:860534..862707-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02730.1 ID=NO11G02730.1|Name=NO11G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2174bp|location=Sequence derived from alignment at chr11:860534..862707- (Nannochloropsis oceanica)
ACAGGCACAAGTACGACTATTATCCACGCAGCGCCTTGGTCCAACCAAAG
TGTCACAAGGATGATCATGAGGGTTTTCCTCTGCGTTCTTCCCCTCCTCG
CTGCAGCGGCAACCGCATCAACATCAATCCCTCGCCTTGCATCCGCCTTT
CAGGCCCCCGTCTCATCTGCCAGCAAGCGTACCCACCCCTTCTCTGCCGC
TGCAGCTGCACGACGACAGCAACGTCAACAGCGACAATCATCCCCCGAGC
TCAAGCACACTCCCTTGCAAGCAACTGCCACTAGCAGCGGTAGCAGCAGC
AGCAAGCTCTCAGACCTGCAAGCATGGACAGCAAAGTGGCAAGCGGAGCA
GCATCAAGGTGCAGGCCCTACTCCCAAGGCTACCGAATATTATCACGCGT
CGCTCGCGGAAGTACTGGCCGAGGTCTTTGACCAGGTTTTGAAAGCGGAG
AAGGCCGAGAAAGGCGTCCCTCCACCACAACACTTGCTTCTCTTCCCAGA
CGCGGAAAGCTTGTACGACGGGAATTTGATGCGACAATTCGGAGACCACT
TGGACCTGTGCAAGGAATGCTGCGAGATCATGGGAATGTCTCAAAATACA
ATTGTCATGCATCCTTCCACGACCATTCCGGCGTTGCAATGCCCCGTGCC
TGCTGTCTTGATTAAGGGCATCGTCCAAACGAGCGAGGAGTTTCCGGACG
ACGACCCATATTGGGACGACGATGACGATTCAGCATTTGACTTCTCCGCG
CTGTACAACGATGACAATGGTAGCCCCAGTGCAGCGGCTGCCAGGGAGCT
GGAGAAGCTGTATCAGGTCCCGGAGGAGGATGGGCCAATAATGGAAGGGA
TGAAGGGGTGGGTCGACGCAATCATTGCCGACCTGGGCGTGTGCCCTTTC
ACGGTAAATGCGGCCAAGGCCGGGTTACCACAGGGGGCGATTCGTTATTT
CATTGATCGGAGTGTATCGCCCGAGGAGATCTATAGCAAGTACTGGAAAG
AAGTGGCGTTGATTTCTAAGGACAGTAAAGAGACGCAAGATGAACGTAGT
TTGAGTACAACTCTTCTGATCACCCCTAACTTTGGCTTGAGAAACCGGGA
GTTTTTTGAGACATTTAGTAACACTCTGACTCAGCCATTGGAAGCCTTGG
GCTTGGAGGACGAGATCCAGCTGGTGTTTTTCCACCCCGAGTGGGTCTTC
CGCGATGGGGCGGACCGAATGGGCCAAGACGACGCCGCGAACTACGCTCG
GCGCTCGCCCTGGCCGATGATCAACATCCTGCGGACGCCGCAAGTCAAAA
AGGCCCAGAAGGCGATCCCGACGGGCTTGGTGTACCGGCAAAACGAGGTG
ACCCTCGACAAGATCGGCAGTGGGCGTTTGCGGAGATGGTTGGTTGAACG
GGACTGGGGGGAGGTGAAGGACAATTTCCGTGTGGACCGGAAGACGGTGC
CTATTCTTTCGACAGCCCAGGATTTGCTACTGGGTCTGACTCCTGAGGCT
CTGAGTGAGGATGCGGTGGCCGTGGCTCCCCCAATGCGTGACGCAACGGA
AAAGGCAGCCACAACCAAGGAGATGGTGGAGAAGAAGCAGCAAGAGCAAT
TTCAGAAAATGATGGCGGATGAAGGGGTGGACGAGGACAAGGACGAGAAG
GGAAATATTGATATTGGTGAGAAGGAGAGCGTGGCATCGGCCTCGGCTGC
TGCCTATTCGGCCGCCGCCGCCGCCAAGGCCGCTGCGGCAAATCGTCGTT
TTTTTGGGGGGGGTTTTGAGAACGAGTTCGGGGAGGCCGGAGAAGCAGCG
GCGGCGGCGGCAGCAGCAGCGGCAGCAGCGATAGGGGAGGACGATGATGA
GGATGATTGGGATAAACCCCTTCCGCAGTCACAAATATATTTTATGACAG
AAAATGATCCGACGAGGGTTAAGCGACCGATGGGAGAGATCATTCAGGAC
TCTAAGGCGGTCCTGGCGTTGTTGAGGAAAAGACTAGCACAGAACGTGCC
TTTGTCTCCTGCAGAAGTGCATGACTTTGAAGAGAGGGCGTCAAGGATGA
GGAAGGATTAGAAAGAGAGAGGAAGGGAAGGGGGAAAGTTAGAGAGGGTG
TTTTAAGATGACCTCTCTCTGCTCTCGATCATTAAGTGATGAAGGAAACG
AAAGAACCGCAATTTATTAAGGAC
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Coding sequence (CDS) from alignment at chr11:860534..862707-

>NO11G02730.1 ID=NO11G02730.1|Name=NO11G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=2001bp|location=Sequence derived from alignment at chr11:860534..862707- (Nannochloropsis oceanica)
ATGATCATGAGGGTTTTCCTCTGCGTTCTTCCCCTCCTCGCTGCAGCGGC
AACCGCATCAACATCAATCCCTCGCCTTGCATCCGCCTTTCAGGCCCCCG
TCTCATCTGCCAGCAAGCGTACCCACCCCTTCTCTGCCGCTGCAGCTGCA
CGACGACAGCAACGTCAACAGCGACAATCATCCCCCGAGCTCAAGCACAC
TCCCTTGCAAGCAACTGCCACTAGCAGCGGTAGCAGCAGCAGCAAGCTCT
CAGACCTGCAAGCATGGACAGCAAAGTGGCAAGCGGAGCAGCATCAAGGT
GCAGGCCCTACTCCCAAGGCTACCGAATATTATCACGCGTCGCTCGCGGA
AGTACTGGCCGAGGTCTTTGACCAGGTTTTGAAAGCGGAGAAGGCCGAGA
AAGGCGTCCCTCCACCACAACACTTGCTTCTCTTCCCAGACGCGGAAAGC
TTGTACGACGGGAATTTGATGCGACAATTCGGAGACCACTTGGACCTGTG
CAAGGAATGCTGCGAGATCATGGGAATGTCTCAAAATACAATTGTCATGC
ATCCTTCCACGACCATTCCGGCGTTGCAATGCCCCGTGCCTGCTGTCTTG
ATTAAGGGCATCGTCCAAACGAGCGAGGAGTTTCCGGACGACGACCCATA
TTGGGACGACGATGACGATTCAGCATTTGACTTCTCCGCGCTGTACAACG
ATGACAATGGTAGCCCCAGTGCAGCGGCTGCCAGGGAGCTGGAGAAGCTG
TATCAGGTCCCGGAGGAGGATGGGCCAATAATGGAAGGGATGAAGGGGTG
GGTCGACGCAATCATTGCCGACCTGGGCGTGTGCCCTTTCACGGTAAATG
CGGCCAAGGCCGGGTTACCACAGGGGGCGATTCGTTATTTCATTGATCGG
AGTGTATCGCCCGAGGAGATCTATAGCAAGTACTGGAAAGAAGTGGCGTT
GATTTCTAAGGACAGTAAAGAGACGCAAGATGAACGTAGTTTGAGTACAA
CTCTTCTGATCACCCCTAACTTTGGCTTGAGAAACCGGGAGTTTTTTGAG
ACATTTAGTAACACTCTGACTCAGCCATTGGAAGCCTTGGGCTTGGAGGA
CGAGATCCAGCTGGTGTTTTTCCACCCCGAGTGGGTCTTCCGCGATGGGG
CGGACCGAATGGGCCAAGACGACGCCGCGAACTACGCTCGGCGCTCGCCC
TGGCCGATGATCAACATCCTGCGGACGCCGCAAGTCAAAAAGGCCCAGAA
GGCGATCCCGACGGGCTTGGTGTACCGGCAAAACGAGGTGACCCTCGACA
AGATCGGCAGTGGGCGTTTGCGGAGATGGTTGGTTGAACGGGACTGGGGG
GAGGTGAAGGACAATTTCCGTGTGGACCGGAAGACGGTGCCTATTCTTTC
GACAGCCCAGGATTTGCTACTGGGTCTGACTCCTGAGGCTCTGAGTGAGG
ATGCGGTGGCCGTGGCTCCCCCAATGCGTGACGCAACGGAAAAGGCAGCC
ACAACCAAGGAGATGGTGGAGAAGAAGCAGCAAGAGCAATTTCAGAAAAT
GATGGCGGATGAAGGGGTGGACGAGGACAAGGACGAGAAGGGAAATATTG
ATATTGGTGAGAAGGAGAGCGTGGCATCGGCCTCGGCTGCTGCCTATTCG
GCCGCCGCCGCCGCCAAGGCCGCTGCGGCAAATCGTCGTTTTTTTGGGGG
GGGTTTTGAGAACGAGTTCGGGGAGGCCGGAGAAGCAGCGGCGGCGGCGG
CAGCAGCAGCGGCAGCAGCGATAGGGGAGGACGATGATGAGGATGATTGG
GATAAACCCCTTCCGCAGTCACAAATATATTTTATGACAGAAAATGATCC
GACGAGGGTTAAGCGACCGATGGGAGAGATCATTCAGGACTCTAAGGCGG
TCCTGGCGTTGTTGAGGAAAAGACTAGCACAGAACGTGCCTTTGTCTCCT
GCAGAAGTGCATGACTTTGAAGAGAGGGCGTCAAGGATGAGGAAGGATTA
G
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Synonyms
Publications