NO11G02710.1, NO11G02710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02710.1
Unique NameNO11G02710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1386
Alignment locationchr11:853230..854615 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:853230..854615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02710.1 vs.
Match: EWM24934.1 (TMS membrane protein/tumor differentially expressed protein [Nannochloropsis gaditana])

HSP 1 Score: 729.9 bits (1883), Expect = 4.800e-207
Identity = 376/463 (81.21%), Postives = 417/463 (90.06%), Query Frame = 0 
Query:    1 MGIVFSMGTSAASALASCCVGSAASCVCSGLKQCLPSGYSAAKVYALLLFFASVLAALILRSTEPVINAEYFTVRCTGEYKDRCYGFQAVYRLSFVDFFFFLTLAIGSKFSVGVHTHAWGLKYLVYLGFLIGMFFVDNKVFDGYVHLARVASLVYLVAQVVTLINFSYNIHTSLMGKAEAAEANGEESNAKFYKVVYLGVSLLCLSGGLTGIALLYAWYAHCKVAQFWISVTLLVSVACVVSSLLDRISMGLLTPSFLFLYFNYQCWSAILSHPNPECNKTANLASSPAKSWNTAVALVFLAISLTYTGWSTYRSIAGSELQADHVEAAAAAATGDGGAGGADMTKILTGEAAVGGESTAATAGE--DEEEGRAVVPTLTASDEVEKSLIWIFHLLLALGGSYMAMAITNWGNANGVPDGVGGGDATVGRESMWLKIVSQWITMILYMWSLWAPVWRGEGESY 462
            MGIVFSMGTSAASALASCCVGSAASCVC+GLKQCLPSGYSAAKVYALLLFFASV+AALILR+TEP INA+YFTVRCTGE+KDRCYGFQAVYRLSFVDFFFFL LA+GSKF VGVHTHAWGLKYLV+LGFLIGMFFVDNKVF GYVHLARVASLVYLVAQVVTLINFSYN+HT+LMGK EAAE++GE + AK YKV+YL +SL CL+GGLTGI LLYA+YAHC+++QFWI++TLLVS+AC+ SSLLDRI MGLLTPS LFLYF+YQCWSAILS+P+P CNKTA+LASS AKSWNTAVALVFLA+SLTYTGWSTYRSI G+ELQ + V AAAA  +G  GAGG ++TKILTGE      +T     E  DEE+G A VPTLTA+D+ E SLIWIFHLLLALGG+YMAMAITNWGNANG+PDGVG GD+TVGRESMWLKIVSQWITM+LY WSLWAPV RGEGE Y
Sbjct:    1 MGIVFSMGTSAASALASCCVGSAASCVCAGLKQCLPSGYSAAKVYALLLFFASVVAALILRTTEPAINADYFTVRCTGEFKDRCYGFQAVYRLSFVDFFFFLALALGSKFVVGVHTHAWGLKYLVFLGFLIGMFFVDNKVFAGYVHLARVASLVYLVAQVVTLINFSYNMHTTLMGKVEAAESSGETNGAKLYKVIYLCLSLFCLAGGLTGIGLLYAFYAHCRLSQFWITLTLLVSLACLFSSLLDRIGMGLLTPSVLFLYFDYQCWSAILSNPDPACNKTASLASSKAKSWNTAVALVFLAVSLTYTGWSTYRSIVGTELQPEQVAAAAAGGSG-AGAGGENLTKILTGEGDTTTTATPVIVTEEGDEEKGGAAVPTLTAADQAEASLIWIFHLLLALGGAYMAMAITNWGNANGIPDGVGDGDSTVGRESMWLKIVSQWITMLLYAWSLWAPVCRGEGEEY 462
The following BLAST results are available for this feature:
BLAST of NO11G02710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24934.14.800e-20781.21TMS membrane protein/tumor differentially expresse... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02710NO11G02710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02710.1NO11G02710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02710.1.cds1NO11G02710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02710.1 ID=NO11G02710.1|Name=NO11G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp
ATGGGCATCGTATTTTCCATGGGCACCTCGGCGGCCAGCGCTTTGGCATC
CTGCTGCGTGGGCAGCGCGGCATCGTGCGTGTGCTCGGGTCTGAAGCAGT
GCCTGCCTAGTGGGTATAGCGCGGCAAAAGTGTACGCCCTCCTCCTCTTC
TTCGCGTCGGTTCTCGCCGCCCTCATATTGCGGAGCACCGAACCTGTTAT
CAATGCCGAGTATTTCACGGTGCGCTGCACGGGGGAATACAAAGATCGGT
GCTATGGCTTTCAGGCAGTGTATCGTTTGTCGTTTGTGGATTTCTTCTTC
TTTCTGACCTTGGCCATTGGAAGCAAGTTTTCCGTAGGCGTTCATACGCA
TGCGTGGGGGCTCAAGTACCTTGTGTATTTGGGGTTTTTGATTGGTATGT
TCTTCGTGGATAACAAGGTCTTTGACGGGTATGTGCACTTGGCGCGGGTG
GCGTCGTTAGTTTACTTGGTGGCGCAGGTGGTGACCCTGATAAATTTTTC
GTATAACATACACACGTCGTTGATGGGCAAGGCGGAGGCAGCCGAGGCGA
ATGGGGAGGAGAGCAATGCCAAATTCTATAAAGTCGTGTATCTAGGGGTT
TCTCTGCTTTGTTTGTCGGGGGGGTTGACGGGGATTGCTCTTTTGTATGC
GTGGTATGCGCATTGTAAAGTGGCACAGTTTTGGATCAGTGTGACCTTGC
TTGTGTCGGTTGCCTGCGTTGTCTCCTCCCTGCTGGATAGGATAAGCATG
GGGCTCTTGACCCCTTCCTTCCTCTTCCTCTATTTTAACTACCAATGCTG
GTCTGCCATCCTCTCGCATCCCAACCCTGAGTGTAATAAGACGGCGAACC
TCGCCTCTTCTCCCGCCAAGAGCTGGAACACCGCCGTCGCATTGGTCTTT
CTTGCCATCTCGCTCACCTACACAGGCTGGAGTACCTACCGTTCAATCGC
AGGTTCAGAGCTCCAGGCCGATCACGTAGAAGCTGCTGCAGCTGCTGCTA
CTGGCGATGGTGGAGCGGGAGGGGCGGATATGACCAAAATTTTGACAGGC
GAGGCTGCAGTAGGAGGAGAGTCAACAGCGGCGACAGCTGGGGAGGACGA
GGAGGAGGGAAGGGCAGTGGTCCCGACATTGACGGCAAGTGACGAGGTGG
AAAAGAGTTTGATTTGGATTTTTCATTTGTTGCTTGCATTGGGGGGTTCG
TATATGGCCATGGCGATTACAAATTGGGGCAATGCGAATGGAGTGCCGGA
TGGAGTGGGGGGGGGAGATGCGACGGTGGGGAGGGAGAGTATGTGGTTGA
AGATTGTCAGTCAGTGGATTACGATGATTTTGTATATGTGGAGTTTGTGG
GCGCCGGTGTGGAGGGGGGAGGGGGAGAGTTATTAG
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protein sequence of NO11G02710.1

>NO11G02710.1-protein ID=NO11G02710.1-protein|Name=NO11G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MGIVFSMGTSAASALASCCVGSAASCVCSGLKQCLPSGYSAAKVYALLLF
FASVLAALILRSTEPVINAEYFTVRCTGEYKDRCYGFQAVYRLSFVDFFF
FLTLAIGSKFSVGVHTHAWGLKYLVYLGFLIGMFFVDNKVFDGYVHLARV
ASLVYLVAQVVTLINFSYNIHTSLMGKAEAAEANGEESNAKFYKVVYLGV
SLLCLSGGLTGIALLYAWYAHCKVAQFWISVTLLVSVACVVSSLLDRISM
GLLTPSFLFLYFNYQCWSAILSHPNPECNKTANLASSPAKSWNTAVALVF
LAISLTYTGWSTYRSIAGSELQADHVEAAAAAATGDGGAGGADMTKILTG
EAAVGGESTAATAGEDEEEGRAVVPTLTASDEVEKSLIWIFHLLLALGGS
YMAMAITNWGNANGVPDGVGGGDATVGRESMWLKIVSQWITMILYMWSLW
APVWRGEGESY*
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mRNA from alignment at chr11:853230..854615+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02710.1 ID=NO11G02710.1|Name=NO11G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp|location=Sequence derived from alignment at chr11:853230..854615+ (Nannochloropsis oceanica)
ATGGGCATCGTATTTTCCATGGGCACCTCGGCGGCCAGCGCTTTGGCATC
CTGCTGCGTGGGCAGCGCGGCATCGTGCGTGTGCTCGGGTCTGAAGCAGT
GCCTGCCTAGTGGGTATAGCGCGGCAAAAGTGTACGCCCTCCTCCTCTTC
TTCGCGTCGGTTCTCGCCGCCCTCATATTGCGGAGCACCGAACCTGTTAT
CAATGCCGAGTATTTCACGGTGCGCTGCACGGGGGAATACAAAGATCGGT
GCTATGGCTTTCAGGCAGTGTATCGTTTGTCGTTTGTGGATTTCTTCTTC
TTTCTGACCTTGGCCATTGGAAGCAAGTTTTCCGTAGGCGTTCATACGCA
TGCGTGGGGGCTCAAGTACCTTGTGTATTTGGGGTTTTTGATTGGTATGT
TCTTCGTGGATAACAAGGTCTTTGACGGGTATGTGCACTTGGCGCGGGTG
GCGTCGTTAGTTTACTTGGTGGCGCAGGTGGTGACCCTGATAAATTTTTC
GTATAACATACACACGTCGTTGATGGGCAAGGCGGAGGCAGCCGAGGCGA
ATGGGGAGGAGAGCAATGCCAAATTCTATAAAGTCGTGTATCTAGGGGTT
TCTCTGCTTTGTTTGTCGGGGGGGTTGACGGGGATTGCTCTTTTGTATGC
GTGGTATGCGCATTGTAAAGTGGCACAGTTTTGGATCAGTGTGACCTTGC
TTGTGTCGGTTGCCTGCGTTGTCTCCTCCCTGCTGGATAGGATAAGCATG
GGGCTCTTGACCCCTTCCTTCCTCTTCCTCTATTTTAACTACCAATGCTG
GTCTGCCATCCTCTCGCATCCCAACCCTGAGTGTAATAAGACGGCGAACC
TCGCCTCTTCTCCCGCCAAGAGCTGGAACACCGCCGTCGCATTGGTCTTT
CTTGCCATCTCGCTCACCTACACAGGCTGGAGTACCTACCGTTCAATCGC
AGGTTCAGAGCTCCAGGCCGATCACGTAGAAGCTGCTGCAGCTGCTGCTA
CTGGCGATGGTGGAGCGGGAGGGGCGGATATGACCAAAATTTTGACAGGC
GAGGCTGCAGTAGGAGGAGAGTCAACAGCGGCGACAGCTGGGGAGGACGA
GGAGGAGGGAAGGGCAGTGGTCCCGACATTGACGGCAAGTGACGAGGTGG
AAAAGAGTTTGATTTGGATTTTTCATTTGTTGCTTGCATTGGGGGGTTCG
TATATGGCCATGGCGATTACAAATTGGGGCAATGCGAATGGAGTGCCGGA
TGGAGTGGGGGGGGGAGATGCGACGGTGGGGAGGGAGAGTATGTGGTTGA
AGATTGTCAGTCAGTGGATTACGATGATTTTGTATATGTGGAGTTTGTGG
GCGCCGGTGTGGAGGGGGGAGGGGGAGAGTTATTAG
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Coding sequence (CDS) from alignment at chr11:853230..854615+

>NO11G02710.1 ID=NO11G02710.1|Name=NO11G02710.1|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at chr11:853230..854615+ (Nannochloropsis oceanica)
ATGGGCATCGTATTTTCCATGGGCACCTCGGCGGCCAGCGCTTTGGCATC
CTGCTGCGTGGGCAGCGCGGCATCGTGCGTGTGCTCGGGTCTGAAGCAGT
GCCTGCCTAGTGGGTATAGCGCGGCAAAAGTGTACGCCCTCCTCCTCTTC
TTCGCGTCGGTTCTCGCCGCCCTCATATTGCGGAGCACCGAACCTGTTAT
CAATGCCGAGTATTTCACGGTGCGCTGCACGGGGGAATACAAAGATCGGT
GCTATGGCTTTCAGGCAGTGTATCGTTTGTCGTTTGTGGATTTCTTCTTC
TTTCTGACCTTGGCCATTGGAAGCAAGTTTTCCGTAGGCGTTCATACGCA
TGCGTGGGGGCTCAAGTACCTTGTGTATTTGGGGTTTTTGATTGGTATGT
TCTTCGTGGATAACAAGGTCTTTGACGGGTATGTGCACTTGGCGCGGGTG
GCGTCGTTAGTTTACTTGGTGGCGCAGGTGGTGACCCTGATAAATTTTTC
GTATAACATACACACGTCGTTGATGGGCAAGGCGGAGGCAGCCGAGGCGA
ATGGGGAGGAGAGCAATGCCAAATTCTATAAAGTCGTGTATCTAGGGGTT
TCTCTGCTTTGTTTGTCGGGGGGGTTGACGGGGATTGCTCTTTTGTATGC
GTGGTATGCGCATTGTAAAGTGGCACAGTTTTGGATCAGTGTGACCTTGC
TTGTGTCGGTTGCCTGCGTTGTCTCCTCCCTGCTGGATAGGATAAGCATG
GGGCTCTTGACCCCTTCCTTCCTCTTCCTCTATTTTAACTACCAATGCTG
GTCTGCCATCCTCTCGCATCCCAACCCTGAGTGTAATAAGACGGCGAACC
TCGCCTCTTCTCCCGCCAAGAGCTGGAACACCGCCGTCGCATTGGTCTTT
CTTGCCATCTCGCTCACCTACACAGGCTGGAGTACCTACCGTTCAATCGC
AGGTTCAGAGCTCCAGGCCGATCACGTAGAAGCTGCTGCAGCTGCTGCTA
CTGGCGATGGTGGAGCGGGAGGGGCGGATATGACCAAAATTTTGACAGGC
GAGGCTGCAGTAGGAGGAGAGTCAACAGCGGCGACAGCTGGGGAGGACGA
GGAGGAGGGAAGGGCAGTGGTCCCGACATTGACGGCAAGTGACGAGGTGG
AAAAGAGTTTGATTTGGATTTTTCATTTGTTGCTTGCATTGGGGGGTTCG
TATATGGCCATGGCGATTACAAATTGGGGCAATGCGAATGGAGTGCCGGA
TGGAGTGGGGGGGGGAGATGCGACGGTGGGGAGGGAGAGTATGTGGTTGA
AGATTGTCAGTCAGTGGATTACGATGATTTTGTATATGTGGAGTTTGTGG
GCGCCGGTGTGGAGGGGGGAGGGGGAGAGTTATTAG
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Synonyms
Publications