NO11G02630.1, NO11G02630.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02630.1
Unique NameNO11G02630.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1150
Alignment locationchr11:819173..820656 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:819173..820656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G02630.1 vs.
Match: EWM24936.1 (ubiquitin carboxyl-terminal hydrolase family1 [Nannochloropsis gaditana])

HSP 1 Score: 255.4 bits (651), Expect = 2.200e-64
Identity = 153/281 (54.45%), Postives = 183/281 (65.12%), Query Frame = 0
Query:    6 PPVASGDRWPALESSSEAFTALLHKLLRPHSSSSSSSSSSSSSSSSAAADATPTSSPYSFQDVFSLDEDCLAFVPGKTLALILAYDHSAI-PAASGPAIERPTSTFPANLVFIKQIPALDNACGTIALIHAALNALPSSVTSSSSALARLVLP---GEEEGGSEEMGRRLDRDEVIHAAHCECAAQGQTQQVQGDAVQYHFVCLFPASDSSPHLIVELDGLKTSPVMHVTGREEGKEEEEEKGEKESFLLSGAKVLKREFLARFANPEETTMNVLALVREE 283
            P +A  DRWPALES +E +TALLH LL P               SS  +D    S P+ FQDVFSLD+D L FV G+TLALILAYD  A+ P+   P    P    P   +FIKQ+P LDNACGTIAL+HA +N LP+S   SSS LA+ V P   GE    SE +G RLD  E I AAHCE AAQGQ++QVQGDAV+YHF+CL P   S    ++ELDGLK  P++HV G E GK     KG  E+FL  GA VLKREFLA+F+N +ET +NVLALVRE+
Sbjct:   66 PSMAKCDRWPALESDAEVYTALLHTLLSP---------------SSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESP----PDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSENGK-----KG--ETFLQMGAMVLKREFLAQFSNADETQINVLALVRED 320          
The following BLAST results are available for this feature:
BLAST of NO11G02630.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24936.12.200e-6454.45ubiquitin carboxyl-terminal hydrolase family1 [Nan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02630NO11G02630Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02630.1NO11G02630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02630.1.cds1NO11G02630.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02630.1.cds2NO11G02630.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02630.1 ID=NO11G02630.1|Name=NO11G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp
ATGCCGATCGATGTGCCGCCAGTCGCGAGTGGGGACCGTTGGCCCGCCCT
TGAAAGCAGTTCGGAGGCCTTTACCGCTTTGCTTCACAAGCTCCTGCGCC
CCCACTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCC
TCCGCCGCCGCCGATGCTACTCCCACCTCCTCCCCCTACTCCTTTCAAGA
CGTCTTCTCCTTGGATGAGGACTGCCTGGCCTTTGTGCCGGGAAAGACAC
TGGCCTTGATCCTTGCGTACGATCACAGCGCTATTCCTGCGGCGTCGGGC
CCTGCGATAGAGCGGCCGACCAGCACTTTCCCAGCCAACCTGGTTTTTAT
CAAGCAGATCCCGGCACTCGACAACGCCTGTGGCACAATTGCATTGATCC
ACGCCGCGCTTAACGCGCTTCCGTCTTCTGTCACATCTTCTTCGTCTGCG
CTTGCACGCTTGGTGCTACCAGGGGAAGAGGAAGGAGGGAGCGAGGAAAT
GGGGCGGCGCTTGGACCGAGACGAAGTCATCCACGCCGCACATTGCGAAT
GTGCCGCTCAAGGCCAAACACAGCAGGTACAGGGTGATGCGGTACAGTAT
CATTTTGTGTGCCTCTTCCCCGCGTCTGATTCTTCCCCTCACTTGATTGT
TGAGTTGGATGGCTTGAAGACATCTCCAGTCATGCATGTGACGGGAAGAG
AAGAGGGAAAGGAAGAGGAAGAAGAAAAAGGAGAAAAGGAATCGTTTTTA
CTGTCTGGCGCCAAGGTGTTAAAACGAGAGTTTCTAGCACGCTTCGCCAA
CCCCGAAGAGACGACCATGAACGTCTTGGCTTTGGTGCGGGAGGAAGAGG
ACGAAGGAGAATCGTAGGTTATGTGTCGCAGCTTTTGAGGACAAGGAACA
AAGAATGACGAAGGAGTAAGGCCCTTTTGAAACAGGCATGGAACCAAGAA
TGTTTAAAAGTTCTCAGGGATTCTATGCCGCTCTATCGCTCCTTCTTTTT
CACTGTTATTAATAACCTTTATGGTGAGGAGGCTTTCAGTGAAGGGAAAC
CAAAGGGTCAGTAGCACGGGGCGCATGAACCGAAGACACAAATTTGCAAT
GTGACAGAATGTAACGACCACAAGTATACAGACGCAAGATAAAAATACTG
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protein sequence of NO11G02630.1

>NO11G02630.1-protein ID=NO11G02630.1-protein|Name=NO11G02630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MPIDVPPVASGDRWPALESSSEAFTALLHKLLRPHSSSSSSSSSSSSSSS
SAAADATPTSSPYSFQDVFSLDEDCLAFVPGKTLALILAYDHSAIPAASG
PAIERPTSTFPANLVFIKQIPALDNACGTIALIHAALNALPSSVTSSSSA
LARLVLPGEEEGGSEEMGRRLDRDEVIHAAHCECAAQGQTQQVQGDAVQY
HFVCLFPASDSSPHLIVELDGLKTSPVMHVTGREEGKEEEEEKGEKESFL
LSGAKVLKREFLARFANPEETTMNVLALVREEEDEGES*
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mRNA from alignment at chr11:819173..820656-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02630.1 ID=NO11G02630.1|Name=NO11G02630.1|organism=Nannochloropsis oceanica|type=mRNA|length=1484bp|location=Sequence derived from alignment at chr11:819173..820656- (Nannochloropsis oceanica)
ATGCCGATCGATGTGCCGCCAGTCGCGAGTGGGGACCGTTGGCCCGCCCT TGAAAGCAGTTCGGAGGCCTTTACCGCTTTGCTTCACAAGCTCCTGCGCC CCCACTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCC TCCGCCGCCGCCGATGCTACTCCCACCTCCTCCCCCTACTCCTTTCAAGA CGTCTTCTCCTTGGATGAGGACTGCCTGGCCTTTGTGCCGGGAAAGACAC TGGCCTTGATCCTTGCGTACGATCACAGCGCTATTCCTGCGGCGTCGGGC CCTGCGATAGAGCGGCCGACCAGCACTTTCCCAGCCAACCTGGTTTTTAT CAAGCAGATCCCGGCACTCGACAACGCCTGTGGCACAATTGCATTGATCC ACGCCGCGCTTAACGCGCTTCCGTCTTCTGTCACATCTTCTTCGTCTGCG CTTGCACGCTTGGTGCTACCAGGGGAAGAGGAAGGAGGGAGCGAGGAAAT GGGGCGGCGCTTGGACCGAGACGAAGTCATCCACGCCGCACATTGGTACG TCAACAACGTAGAGATTGGCGGTGGTAGAGATTCTGGGAATATTAAGCAG TATGCACGCATGAGTAGGTCTAGTGCGTTGCTTTCAATGACTTTTGCTGT GATGGGAATGGGAGATATACTTGCTTGAATTGTGCATGCCTTTAGATATA TGTGCCTGTGTTAACGTTCCGACTCTGCCACCATCCTGCCATTGATCACC CAATGCAATTTTATGGCACAACTGCACCATGTACTTTCAAGCAACCAAAT AGCACAAGTGAGAATGCAATTAAAGCTCAACGCTGTCTTTCCCTGTCACT TCCATCCTCCCCCCTCTCTACCCACACAGCGAATGTGCCGCTCAAGGCCA AACACAGCAGGTACAGGGTGATGCGGTACAGTATCATTTTGTGTGCCTCT TCCCCGCGTCTGATTCTTCCCCTCACTTGATTGTTGAGTTGGATGGCTTG AAGACATCTCCAGTCATGCATGTGACGGGAAGAGAAGAGGGAAAGGAAGA GGAAGAAGAAAAAGGAGAAAAGGAATCGTTTTTACTGTCTGGCGCCAAGG TGTTAAAACGAGAGTTTCTAGCACGCTTCGCCAACCCCGAAGAGACGACC ATGAACGTCTTGGCTTTGGTGCGGGAGGAAGAGGACGAAGGAGAATCGTA GGTTATGTGTCGCAGCTTTTGAGGACAAGGAACAAAGAATGACGAAGGAG TAAGGCCCTTTTGAAACAGGCATGGAACCAAGAATGTTTAAAAGTTCTCA GGGATTCTATGCCGCTCTATCGCTCCTTCTTTTTCACTGTTATTAATAAC CTTTATGGTGAGGAGGCTTTCAGTGAAGGGAAACCAAAGGGTCAGTAGCA CGGGGCGCATGAACCGAAGACACAAATTTGCAATGTGACAGAATGTAACG ACCACAAGTATACAGACGCAAGATAAAAATACTG
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Coding sequence (CDS) from alignment at chr11:819173..820656-

>NO11G02630.1 ID=NO11G02630.1|Name=NO11G02630.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr11:819173..820656- (Nannochloropsis oceanica)
ATGCCGATCGATGTGCCGCCAGTCGCGAGTGGGGACCGTTGGCCCGCCCT
TGAAAGCAGTTCGGAGGCCTTTACCGCTTTGCTTCACAAGCTCCTGCGCC
CCCACTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCCTCCTCC
TCCGCCGCCGCCGATGCTACTCCCACCTCCTCCCCCTACTCCTTTCAAGA
CGTCTTCTCCTTGGATGAGGACTGCCTGGCCTTTGTGCCGGGAAAGACAC
TGGCCTTGATCCTTGCGTACGATCACAGCGCTATTCCTGCGGCGTCGGGC
CCTGCGATAGAGCGGCCGACCAGCACTTTCCCAGCCAACCTGGTTTTTAT
CAAGCAGATCCCGGCACTCGACAACGCCTGTGGCACAATTGCATTGATCC
ACGCCGCGCTTAACGCGCTTCCGTCTTCTGTCACATCTTCTTCGTCTGCG
CTTGCACGCTTGGTGCTACCAGGGGAAGAGGAAGGAGGGAGCGAGGAAAT
GGGGCGGCGCTTGGACCGAGACGAAGTCATCCACGCCGCACATTGCGAAT
GTGCCGCTCAAGGCCAAACACAGCAGGTACAGGGTGATGCGGTACAGTAT
CATTTTGTGTGCCTCTTCCCCGCGTCTGATTCTTCCCCTCACTTGATTGT
TGAGTTGGATGGCTTGAAGACATCTCCAGTCATGCATGTGACGGGAAGAG
AAGAGGGAAAGGAAGAGGAAGAAGAAAAAGGAGAAAAGGAATCGTTTTTA
CTGTCTGGCGCCAAGGTGTTAAAACGAGAGTTTCTAGCACGCTTCGCCAA
CCCCGAAGAGACGACCATGAACGTCTTGGCTTTGGTGCGGGAGGAAGAGG
ACGAAGGAGAATCGTAG
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Synonyms
Publications