NO11G02610.1, NO11G02610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02610.1
Unique NameNO11G02610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1248
Alignment locationchr11:816808..818055 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:816808..818055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02610.1 vs.
Match: EWM24939.1 (signal recognition particle receptor [Nannochloropsis gaditana])

HSP 1 Score: 617.5 bits (1591), Expect = 3.100e-173
Identity = 326/419 (77.80%), Postives = 371/419 (88.54%), Query Frame = 0 
Query:    2 GAGNSSDKAVVEGGGGGGGKLGV----GKKKTTWHDGTGRVSKSAMEALDRSKRVESPNSSKEDIQN-AALREMQATYLPSTGEVPQWEEDD-APHFLEDSTPSSTSSSTSSSSFFSKLFAQVTGNAVLSSTDLDPILEEMRTILITKNVASEIAHDIIDSVRSSLVGQKLPSLTRVKTVVREALEKAIVRVLTPKKSTDILREVMGAKAEGRPYTIVFVGINGVGKSTSLSKICYYLKRHGLKVLIAACDTFRSGAVEQLKVHARCLEVELFDKGYHKDPAAVAKDAIKEGREGGYDVVLVDTAGRMQNKEPLMRALAKLVSDNEPDLVLFVGEALVGNDGIDQLSMFNRALANYSPPGKMHQIDGIMLTKFDTVDEKVGAALSMSYKTGQPIMFVGTGQKYTHLKKLNVNMILNCLF 415
            GAG      V EGGG   G   V    GKK TTWHDG+GR+SKSAMEALDRSKRVES +   ED QN AA +E +ATY+P+ GE P+WE+++ A  FL+    S++SS+T+SSSFFSKLFA+VTGNAVLS+ ++DPI+EEMR +LI KNVASEIA DI +SVR+SLVGQKLPSLT VKTVVREALE+AIVRVLTP+KSTD+LR+VM AKAEGRPY++VFVGINGVGKSTSLSK+CYYLK+HGL+VLIAACDTFRSGAVEQLKVHARCLEV+L+DKGYHKDPAAVAK AIKE  + G+DVVLVDTAGRMQNKEPLMRALAKLVSDN+PDLV+FVGEALVGNDGIDQL++FN+ALANYSPPGK HQIDGI+LTKFDTVDEKVGAALSM YKTGQPI+FVGTGQKYTHLKKLNVN+ILNCLF
Sbjct:  236 GAGVGGSGGVQEGGGAEEGAGHVRKEGGKKPTTWHDGSGRMSKSAMEALDRSKRVESLDGLAEDHQNEAAFQETRATYMPAAGETPEWEKEEVALDFLDGKETSTSSSATTSSSFFSKLFARVTGNAVLSAAEVDPIMEEMRMLLIGKNVASEIAQDICESVRTSLVGQKLPSLTSVKTVVREALERAIVRVLTPRKSTDLLRQVMAAKAEGRPYSVVFVGINGVGKSTSLSKVCYYLKQHGLRVLIAACDTFRSGAVEQLKVHARCLEVDLYDKGYHKDPAAVAKAAIKEATDKGHDVVLVDTAGRMQNKEPLMRALAKLVSDNQPDLVVFVGEALVGNDGIDQLTVFNQALANYSPPGKTHQIDGIILTKFDTVDEKVGAALSMCYKTGQPILFVGTGQKYTHLKKLNVNLILNCLF 654
The following BLAST results are available for this feature:
BLAST of NO11G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24939.13.100e-17377.80signal recognition particle receptor [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02610NO11G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02610.1NO11G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02610.1.cds1NO11G02610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02610.1 ID=NO11G02610.1|Name=NO11G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
ATGGGGGCAGGTAATAGTTCGGACAAGGCGGTTGTGGAAGGAGGAGGAGG
AGGAGGGGGAAAGCTTGGTGTGGGAAAGAAGAAGACTACTTGGCATGATG
GGACAGGAAGAGTGAGTAAATCGGCGATGGAGGCATTGGATCGATCGAAG
CGGGTGGAGAGCCCGAATAGCTCGAAAGAAGACATTCAGAACGCAGCACT
TAGGGAGATGCAAGCGACGTACTTGCCGTCCACGGGCGAGGTTCCCCAGT
GGGAAGAAGACGATGCCCCCCACTTTCTCGAGGATTCTACCCCGTCGTCA
ACTTCTTCCTCCACCTCTTCCTCCTCATTCTTCTCGAAGCTTTTCGCCCA
AGTCACGGGCAATGCTGTCTTGTCCTCGACAGACTTAGACCCCATCCTCG
AAGAAATGCGTACTATACTCATCACCAAGAACGTCGCCTCCGAGATCGCG
CATGACATCATCGATTCGGTCCGTTCGTCCCTTGTCGGTCAAAAACTCCC
ATCGTTGACACGTGTCAAAACGGTGGTAAGGGAAGCTTTAGAAAAGGCGA
TTGTGCGTGTATTGACCCCAAAAAAATCAACGGATATCCTAAGGGAGGTC
ATGGGCGCGAAGGCGGAGGGAAGGCCGTACACAATCGTATTTGTAGGGAT
CAATGGAGTGGGGAAATCAACGAGTTTGTCCAAGATCTGCTATTACTTGA
AGAGGCATGGCTTAAAAGTGTTGATTGCGGCATGTGACACCTTCCGGTCG
GGGGCAGTGGAGCAGCTGAAGGTCCATGCCCGGTGCTTGGAGGTGGAGTT
GTTCGACAAGGGATACCACAAGGACCCGGCCGCCGTGGCCAAGGACGCGA
TCAAGGAGGGGAGGGAAGGAGGATATGACGTAGTGCTGGTGGATACCGCT
GGGAGGATGCAGAACAAGGAGCCGTTGATGCGGGCGTTGGCCAAGTTGGT
GTCGGACAATGAGCCTGATTTGGTGTTATTTGTAGGCGAGGCTCTGGTAG
GGAACGATGGGATTGACCAGCTCTCTATGTTTAACCGGGCCTTGGCGAAT
TACTCGCCACCGGGTAAGATGCACCAGATCGACGGAATCATGCTCACCAA
ATTCGACACGGTGGACGAGAAGGTGGGGGCGGCGCTGTCGATGAGCTACA
AGACGGGACAACCGATTATGTTCGTGGGCACAGGCCAGAAATATACGCAT
TTGAAGAAGCTGAATGTGAACATGATTTTGAATTGCTTGTTCAGGTAG
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protein sequence of NO11G02610.1

>NO11G02610.1-protein ID=NO11G02610.1-protein|Name=NO11G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MGAGNSSDKAVVEGGGGGGGKLGVGKKKTTWHDGTGRVSKSAMEALDRSK
RVESPNSSKEDIQNAALREMQATYLPSTGEVPQWEEDDAPHFLEDSTPSS
TSSSTSSSSFFSKLFAQVTGNAVLSSTDLDPILEEMRTILITKNVASEIA
HDIIDSVRSSLVGQKLPSLTRVKTVVREALEKAIVRVLTPKKSTDILREV
MGAKAEGRPYTIVFVGINGVGKSTSLSKICYYLKRHGLKVLIAACDTFRS
GAVEQLKVHARCLEVELFDKGYHKDPAAVAKDAIKEGREGGYDVVLVDTA
GRMQNKEPLMRALAKLVSDNEPDLVLFVGEALVGNDGIDQLSMFNRALAN
YSPPGKMHQIDGIMLTKFDTVDEKVGAALSMSYKTGQPIMFVGTGQKYTH
LKKLNVNMILNCLFR*
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mRNA from alignment at chr11:816808..818055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02610.1 ID=NO11G02610.1|Name=NO11G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp|location=Sequence derived from alignment at chr11:816808..818055- (Nannochloropsis oceanica)
ATGGGGGCAGGTAATAGTTCGGACAAGGCGGTTGTGGAAGGAGGAGGAGG
AGGAGGGGGAAAGCTTGGTGTGGGAAAGAAGAAGACTACTTGGCATGATG
GGACAGGAAGAGTGAGTAAATCGGCGATGGAGGCATTGGATCGATCGAAG
CGGGTGGAGAGCCCGAATAGCTCGAAAGAAGACATTCAGAACGCAGCACT
TAGGGAGATGCAAGCGACGTACTTGCCGTCCACGGGCGAGGTTCCCCAGT
GGGAAGAAGACGATGCCCCCCACTTTCTCGAGGATTCTACCCCGTCGTCA
ACTTCTTCCTCCACCTCTTCCTCCTCATTCTTCTCGAAGCTTTTCGCCCA
AGTCACGGGCAATGCTGTCTTGTCCTCGACAGACTTAGACCCCATCCTCG
AAGAAATGCGTACTATACTCATCACCAAGAACGTCGCCTCCGAGATCGCG
CATGACATCATCGATTCGGTCCGTTCGTCCCTTGTCGGTCAAAAACTCCC
ATCGTTGACACGTGTCAAAACGGTGGTAAGGGAAGCTTTAGAAAAGGCGA
TTGTGCGTGTATTGACCCCAAAAAAATCAACGGATATCCTAAGGGAGGTC
ATGGGCGCGAAGGCGGAGGGAAGGCCGTACACAATCGTATTTGTAGGGAT
CAATGGAGTGGGGAAATCAACGAGTTTGTCCAAGATCTGCTATTACTTGA
AGAGGCATGGCTTAAAAGTGTTGATTGCGGCATGTGACACCTTCCGGTCG
GGGGCAGTGGAGCAGCTGAAGGTCCATGCCCGGTGCTTGGAGGTGGAGTT
GTTCGACAAGGGATACCACAAGGACCCGGCCGCCGTGGCCAAGGACGCGA
TCAAGGAGGGGAGGGAAGGAGGATATGACGTAGTGCTGGTGGATACCGCT
GGGAGGATGCAGAACAAGGAGCCGTTGATGCGGGCGTTGGCCAAGTTGGT
GTCGGACAATGAGCCTGATTTGGTGTTATTTGTAGGCGAGGCTCTGGTAG
GGAACGATGGGATTGACCAGCTCTCTATGTTTAACCGGGCCTTGGCGAAT
TACTCGCCACCGGGTAAGATGCACCAGATCGACGGAATCATGCTCACCAA
ATTCGACACGGTGGACGAGAAGGTGGGGGCGGCGCTGTCGATGAGCTACA
AGACGGGACAACCGATTATGTTCGTGGGCACAGGCCAGAAATATACGCAT
TTGAAGAAGCTGAATGTGAACATGATTTTGAATTGCTTGTTCAGGTAG
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Coding sequence (CDS) from alignment at chr11:816808..818055-

>NO11G02610.1 ID=NO11G02610.1|Name=NO11G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at chr11:816808..818055- (Nannochloropsis oceanica)
ATGGGGGCAGGTAATAGTTCGGACAAGGCGGTTGTGGAAGGAGGAGGAGG
AGGAGGGGGAAAGCTTGGTGTGGGAAAGAAGAAGACTACTTGGCATGATG
GGACAGGAAGAGTGAGTAAATCGGCGATGGAGGCATTGGATCGATCGAAG
CGGGTGGAGAGCCCGAATAGCTCGAAAGAAGACATTCAGAACGCAGCACT
TAGGGAGATGCAAGCGACGTACTTGCCGTCCACGGGCGAGGTTCCCCAGT
GGGAAGAAGACGATGCCCCCCACTTTCTCGAGGATTCTACCCCGTCGTCA
ACTTCTTCCTCCACCTCTTCCTCCTCATTCTTCTCGAAGCTTTTCGCCCA
AGTCACGGGCAATGCTGTCTTGTCCTCGACAGACTTAGACCCCATCCTCG
AAGAAATGCGTACTATACTCATCACCAAGAACGTCGCCTCCGAGATCGCG
CATGACATCATCGATTCGGTCCGTTCGTCCCTTGTCGGTCAAAAACTCCC
ATCGTTGACACGTGTCAAAACGGTGGTAAGGGAAGCTTTAGAAAAGGCGA
TTGTGCGTGTATTGACCCCAAAAAAATCAACGGATATCCTAAGGGAGGTC
ATGGGCGCGAAGGCGGAGGGAAGGCCGTACACAATCGTATTTGTAGGGAT
CAATGGAGTGGGGAAATCAACGAGTTTGTCCAAGATCTGCTATTACTTGA
AGAGGCATGGCTTAAAAGTGTTGATTGCGGCATGTGACACCTTCCGGTCG
GGGGCAGTGGAGCAGCTGAAGGTCCATGCCCGGTGCTTGGAGGTGGAGTT
GTTCGACAAGGGATACCACAAGGACCCGGCCGCCGTGGCCAAGGACGCGA
TCAAGGAGGGGAGGGAAGGAGGATATGACGTAGTGCTGGTGGATACCGCT
GGGAGGATGCAGAACAAGGAGCCGTTGATGCGGGCGTTGGCCAAGTTGGT
GTCGGACAATGAGCCTGATTTGGTGTTATTTGTAGGCGAGGCTCTGGTAG
GGAACGATGGGATTGACCAGCTCTCTATGTTTAACCGGGCCTTGGCGAAT
TACTCGCCACCGGGTAAGATGCACCAGATCGACGGAATCATGCTCACCAA
ATTCGACACGGTGGACGAGAAGGTGGGGGCGGCGCTGTCGATGAGCTACA
AGACGGGACAACCGATTATGTTCGTGGGCACAGGCCAGAAATATACGCAT
TTGAAGAAGCTGAATGTGAACATGATTTTGAATTGCTTGTTCAGGTAG
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Synonyms
Publications