NO11G02600.1, NO11G02600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02600.1
Unique NameNO11G02600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1134
Alignment locationchr11:815262..816395 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:815262..816395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G02600.1 vs.
Match: XP_005853457.1 (anthranilate phosphoribosyltransferase [Nannochloropsis gaditana CCMP526]; EKU22900.1 anthranilate phosphoribosyltransferase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 633.3 bits (1632), Expect = 5.000e-178
Identity = 326/377 (86.47%), Postives = 348/377 (92.31%), Query Frame = 0
Query:    1 MNEEVEANTKSGLPKPIKDKNVVLTDTSLKPFLEHIIAGASLSSTDVEAAFDRILAGADPVQVGALLAMLRQRGETPVEIAGMVRAMLKQRFPVNVTGKLLDIVGTGGDGAHTINISTAAMILAAACGCKAAKLGNRSVSSKCGSADVLEALGIDMDLTAEQVAECIETTGVGFMFAPVVHPTMKKVAPVRRALGVRTAFNIVGPLLNAAGAQHAVVGVFHERLLDVLAGTLMEIGTVDRALIIHGAGLDEISPLGPSTIVELRNVSPEGQPRRYEKKTYEFDPLTCGVPRCEIGDLRGGDANENAALLREVLKAGQEKGAKRDAVVLNAAAGLYVYGMVDSMEEGVKKAYEVLGDGRALVKLEEWIAFAKMLRNRG 378
            MNEEVE NTKSGLP PIKDK+V LTDTSLKPFLEHIIAGASLSS+DVEAAFDRILAG+DPVQVGALLAMLRQRGETPVEIAGMVRAMLKQR+PVNVTGKLLDIVGTGGDGAHTINISTAA+ILAAACGCKAAKLGNRSVSSKCGSADVLE LGIDM+LTAEQVAECIETTGVGFMFAPVVHPTMKKVAP+R+ALGVRTAFNIVGPLLNAAGAQHAVVGVF ERLLDVLAGTL EIGTVDRALIIHG GLDEISPLGPSTIVEL+NV+P GQ R YE+ +Y FDPLTCG+PRC I DLRGGDA ENAALLR+VL  G E+GAKRDAVVLNAAAGLYVYG V S+ EGV  AY++L  G+ALVKL+EWIA ++ LR  G
Sbjct:    1 MNEEVETNTKSGLPAPIKDKSVPLTDTSLKPFLEHIIAGASLSSSDVEAAFDRILAGSDPVQVGALLAMLRQRGETPVEIAGMVRAMLKQRYPVNVTGKLLDIVGTGGDGAHTINISTAAIILAAACGCKAAKLGNRSVSSKCGSADVLETLGIDMELTAEQVAECIETTGVGFMFAPVVHPTMKKVAPIRKALGVRTAFNIVGPLLNAAGAQHAVVGVFQERLLDVLAGTLGEIGTVDRALIIHGVGLDEISPLGPSTIVELKNVAPAGQARVYERTSYTFDPLTCGIPRCAIEDLRGGDATENAALLRQVLSGGPERGAKRDAVVLNAAAGLYVYGSVPSLAEGVTLAYDILASGKALVKLDEWIACSQALRKGG 377          
The following BLAST results are available for this feature:
BLAST of NO11G02600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853457.15.000e-17886.47anthranilate phosphoribosyltransferase [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02600NO11G02600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02600.1NO11G02600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02600.1.cds1NO11G02600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02600.1 ID=NO11G02600.1|Name=NO11G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp
ATGAACGAAGAGGTGGAAGCAAATACCAAGTCGGGTCTCCCAAAGCCTAT
CAAGGACAAAAACGTCGTACTCACTGACACATCACTCAAGCCCTTCCTCG
AGCACATCATTGCCGGAGCCAGCCTGTCGTCGACAGACGTGGAAGCCGCG
TTTGATCGCATTTTGGCCGGGGCAGACCCAGTGCAAGTAGGGGCCTTGCT
AGCAATGCTTCGTCAGCGAGGAGAGACCCCTGTTGAAATCGCCGGTATGG
TCCGCGCAATGCTCAAGCAACGATTTCCTGTCAACGTGACAGGAAAACTG
CTCGACATAGTAGGCACGGGGGGGGACGGCGCACATACCATCAACATTTC
CACCGCAGCCATGATCCTCGCCGCCGCGTGTGGGTGCAAAGCCGCGAAGC
TTGGCAACCGCTCCGTTTCTTCTAAATGCGGTTCTGCCGATGTTTTAGAA
GCTTTGGGGATCGACATGGATCTGACTGCCGAGCAGGTTGCTGAGTGCAT
TGAGACCACCGGGGTAGGTTTTATGTTTGCGCCTGTGGTGCATCCGACCA
TGAAAAAGGTAGCACCGGTCCGTCGGGCTTTGGGTGTTCGTACGGCTTTT
AATATTGTGGGTCCGCTGCTCAATGCGGCGGGGGCGCAGCACGCGGTGGT
GGGCGTCTTCCACGAGCGACTGCTTGATGTCCTCGCTGGAACATTGATGG
AGATAGGGACCGTAGACCGGGCGTTAATTATCCATGGCGCGGGGTTGGAT
GAGATATCCCCTTTGGGGCCTTCGACGATAGTGGAGTTGCGGAATGTGTC
ACCGGAGGGTCAGCCTAGGAGGTACGAAAAGAAGACATATGAGTTTGATC
CGTTGACGTGCGGCGTGCCCAGGTGCGAGATAGGGGATCTGCGGGGGGGA
GACGCAAACGAGAATGCAGCCTTGCTGCGGGAGGTCTTGAAGGCGGGTCA
GGAAAAGGGAGCGAAACGCGACGCAGTCGTCTTGAATGCAGCAGCTGGCT
TGTATGTGTATGGGATGGTGGATAGCATGGAGGAGGGAGTGAAGAAGGCC
TATGAGGTGTTGGGGGATGGCAGGGCGCTGGTGAAGCTGGAGGAGTGGAT
TGCGTTTGCGAAGATGTTGAGGAATAGGGGGTAG
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protein sequence of NO11G02600.1

>NO11G02600.1-protein ID=NO11G02600.1-protein|Name=NO11G02600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MNEEVEANTKSGLPKPIKDKNVVLTDTSLKPFLEHIIAGASLSSTDVEAA
FDRILAGADPVQVGALLAMLRQRGETPVEIAGMVRAMLKQRFPVNVTGKL
LDIVGTGGDGAHTINISTAAMILAAACGCKAAKLGNRSVSSKCGSADVLE
ALGIDMDLTAEQVAECIETTGVGFMFAPVVHPTMKKVAPVRRALGVRTAF
NIVGPLLNAAGAQHAVVGVFHERLLDVLAGTLMEIGTVDRALIIHGAGLD
EISPLGPSTIVELRNVSPEGQPRRYEKKTYEFDPLTCGVPRCEIGDLRGG
DANENAALLREVLKAGQEKGAKRDAVVLNAAAGLYVYGMVDSMEEGVKKA
YEVLGDGRALVKLEEWIAFAKMLRNRG*
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mRNA from alignment at chr11:815262..816395+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02600.1 ID=NO11G02600.1|Name=NO11G02600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp|location=Sequence derived from alignment at chr11:815262..816395+ (Nannochloropsis oceanica)
ATGAACGAAGAGGTGGAAGCAAATACCAAGTCGGGTCTCCCAAAGCCTAT CAAGGACAAAAACGTCGTACTCACTGACACATCACTCAAGCCCTTCCTCG AGCACATCATTGCCGGAGCCAGCCTGTCGTCGACAGACGTGGAAGCCGCG TTTGATCGCATTTTGGCCGGGGCAGACCCAGTGCAAGTAGGGGCCTTGCT AGCAATGCTTCGTCAGCGAGGAGAGACCCCTGTTGAAATCGCCGGTATGG TCCGCGCAATGCTCAAGCAACGATTTCCTGTCAACGTGACAGGAAAACTG CTCGACATAGTAGGCACGGGGGGGGACGGCGCACATACCATCAACATTTC CACCGCAGCCATGATCCTCGCCGCCGCGTGTGGGTGCAAAGCCGCGAAGC TTGGCAACCGCTCCGTTTCTTCTAAATGCGGTTCTGCCGATGTTTTAGAA GCTTTGGGGATCGACATGGATCTGACTGCCGAGCAGGTTGCTGAGTGCAT TGAGACCACCGGGGTAGGTTTTATGTTTGCGCCTGTGGTGCATCCGACCA TGAAAAAGGTAGCACCGGTCCGTCGGGCTTTGGGTGTTCGTACGGCTTTT AATATTGTGGGTCCGCTGCTCAATGCGGCGGGGGCGCAGCACGCGGTGGT GGGCGTCTTCCACGAGCGACTGCTTGATGTCCTCGCTGGAACATTGATGG AGATAGGGACCGTAGACCGGGCGTTAATTATCCATGGCGCGGGGTTGGAT GAGATATCCCCTTTGGGGCCTTCGACGATAGTGGAGTTGCGGAATGTGTC ACCGGAGGGTCAGCCTAGGAGGTACGAAAAGAAGACATATGAGTTTGATC CGTTGACGTGCGGCGTGCCCAGGTGCGAGATAGGGGATCTGCGGGGGGGA GACGCAAACGAGAATGCAGCCTTGCTGCGGGAGGTCTTGAAGGCGGGTCA GGAAAAGGGAGCGAAACGCGACGCAGTCGTCTTGAATGCAGCAGCTGGCT TGTATGTGTATGGGATGGTGGATAGCATGGAGGAGGGAGTGAAGAAGGCC TATGAGGTGTTGGGGGATGGCAGGGCGCTGGTGAAGCTGGAGGAGTGGAT TGCGTTTGCGAAGATGTTGAGGAATAGGGGGTAG
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Coding sequence (CDS) from alignment at chr11:815262..816395+

>NO11G02600.1 ID=NO11G02600.1|Name=NO11G02600.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr11:815262..816395+ (Nannochloropsis oceanica)
ATGAACGAAGAGGTGGAAGCAAATACCAAGTCGGGTCTCCCAAAGCCTAT
CAAGGACAAAAACGTCGTACTCACTGACACATCACTCAAGCCCTTCCTCG
AGCACATCATTGCCGGAGCCAGCCTGTCGTCGACAGACGTGGAAGCCGCG
TTTGATCGCATTTTGGCCGGGGCAGACCCAGTGCAAGTAGGGGCCTTGCT
AGCAATGCTTCGTCAGCGAGGAGAGACCCCTGTTGAAATCGCCGGTATGG
TCCGCGCAATGCTCAAGCAACGATTTCCTGTCAACGTGACAGGAAAACTG
CTCGACATAGTAGGCACGGGGGGGGACGGCGCACATACCATCAACATTTC
CACCGCAGCCATGATCCTCGCCGCCGCGTGTGGGTGCAAAGCCGCGAAGC
TTGGCAACCGCTCCGTTTCTTCTAAATGCGGTTCTGCCGATGTTTTAGAA
GCTTTGGGGATCGACATGGATCTGACTGCCGAGCAGGTTGCTGAGTGCAT
TGAGACCACCGGGGTAGGTTTTATGTTTGCGCCTGTGGTGCATCCGACCA
TGAAAAAGGTAGCACCGGTCCGTCGGGCTTTGGGTGTTCGTACGGCTTTT
AATATTGTGGGTCCGCTGCTCAATGCGGCGGGGGCGCAGCACGCGGTGGT
GGGCGTCTTCCACGAGCGACTGCTTGATGTCCTCGCTGGAACATTGATGG
AGATAGGGACCGTAGACCGGGCGTTAATTATCCATGGCGCGGGGTTGGAT
GAGATATCCCCTTTGGGGCCTTCGACGATAGTGGAGTTGCGGAATGTGTC
ACCGGAGGGTCAGCCTAGGAGGTACGAAAAGAAGACATATGAGTTTGATC
CGTTGACGTGCGGCGTGCCCAGGTGCGAGATAGGGGATCTGCGGGGGGGA
GACGCAAACGAGAATGCAGCCTTGCTGCGGGAGGTCTTGAAGGCGGGTCA
GGAAAAGGGAGCGAAACGCGACGCAGTCGTCTTGAATGCAGCAGCTGGCT
TGTATGTGTATGGGATGGTGGATAGCATGGAGGAGGGAGTGAAGAAGGCC
TATGAGGTGTTGGGGGATGGCAGGGCGCTGGTGAAGCTGGAGGAGTGGAT
TGCGTTTGCGAAGATGTTGAGGAATAGGGGGTAG
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Synonyms
Publications