NO11G02580.4, NO11G02580.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02580.4
Unique NameNO11G02580.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1752
Alignment locationchr11:809696..811918 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:809696..811918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G02580.4 vs.
Match: XP_005853458.1 (signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526]; EKU22901.1 signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 287.0 bits (733), Expect = 4.300e-74
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0 
Query:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHEKEDGKIELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAG 148
            MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVH+KEDGK+ELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAG
Sbjct:    1 MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSESPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQKEDGKVELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAG 147
The following BLAST results are available for this feature:
BLAST of NO11G02580.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853458.14.300e-7498.64signal peptidase, endoplasmic reticulum-type [Nann... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02580NO11G02580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02580.4NO11G02580.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02580.4.cds1NO11G02580.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02580.4.cds2NO11G02580.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02580.4.cds3NO11G02580.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02580.4 ID=NO11G02580.4|Name=NO11G02580.4|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp
TAATAAATGCCACCGCCCTGAATCCTTCGACTGCAGACCTTTTTTTCACG
ATCGGCATCGGCTTGCAAGGCTATGACTAGTTTTCTCCTCTACTCTGGGC
ATGCGAAACACCAGCTAAAGCAAGGCTCCTGCCTAACTCTCCCTCCCTCC
CATCCATCCTGCCCCGCTCCCTCTCTCCCCCGTTTCCACGATTCCACATA
AACACCAGCGCACCGCAAACCGCATTAGCCATGGAAGAAATTGTTCAAGG
ACAGCTTTCGGAGCTCAAAAAGCTGTGGCGGTCTCCGCGGATGCTCCTGT
CGCAATCTCTGAACCTGGCCATGATCGTTTTCTCCGCCCTGATGATTTGG
AAGGGGCTCATGTTTCTGACCAAGAGCGAGAGTCCCGTTGTCGTGGTGCT
CAGTGGGTCTATGGAACCCGCCTTTCAGAGGGGCGACATATTATTTCTAA
ACAATCAAGATGATCCGATCCGCGTAGGAGAGATCGTGGTGTTCAAGATC
AAGGACCGTGACATTCCCATCGTCCATCGTGTACTGGAGGTGCACGAGAA
GGAGGACGGCAAGATCGAGTTGCTGACCAAAGGAGACAACAATCGTGTTG
GCGACCGAGGCCTTTACGCGCCTGGCCAGCTATGGTTGAACCGTGAGGAT
ATCCTGGGACGGGCTGCCGGGTATGTTTATCTGAGTGCGGGGAAGTGTGT
GGGTGGAAATATGCAGGCTGCCCTCGCATTTCTCCTCGAATGGACTAGCA
CACATTCCTTTGTTATTTGGGTCTTCTCCGCAGGCTAATCATTTGATTAT
CTCACCATGTACAGGACATTGAGGTACCTGGGCATGGTTACCATCATTCT
CAACGACTATCCCATGCTCAAGTACGTATGAGTCCTTTCTTTCAGCCGTT
GTCTGCCCATGTACCCACCCGTTTTTTAACTGTCGCCTTCTTTCCCGCGC
CCTTCCCTTACCTTAGAAACAAAGAACTCATAAAGTCATGTATCCCCCCA
AACCTCCCTTCCTTCTTTCCTCCCTCCATCCATCTTTCTACCTGCAGATA
TGTGCTGGTGGGTATAATGGGGCTCTTCGTACTAACAAATAAAGAGGTAT
GCCTCACATAGGGGGGGGGAAGGATAAGGGGAGGAAAAGGGGAGGGAGAA
CGAGATTGCGTGCACAATTTATTCAGACTGTCATCCACACACGCCTCCAC
TAATTCTCTCCTCATTGGCAAAATTAAATTGTACCACTGCAGAGTTGATG
AATCTTCCGCCACTGAAACAAGAAGAGCATAGCGGCTCTGCGGTAGCATG
GGAAGACAGACAATGGAGCCCGTAGGCAAGCGCAGACGTGAGAAACAAAA
GGAGCGGAGGGAGTGAAATGAGAAATAGAAGAGTGGATGGATGGATGGAT
GAAGGGATTGATAGACACAATAGGCTAGGGTGAAAGGGGGCGAGGAGTGG
AGAGAGGAATAGCAAAGGAGGTTAAGCAAAGAAACCGACAGAAATAAAAA
TGTGCATATCAGACAAACGTCAGTCACATCGAGCCCCAAGCGAGTGCACG
TTTCTATCGTCTTCGTCGCAGTGGGGAGAGGGGAAAGAGAGGACGATGAA
ACGACACCCACAAAGAAGCAGTGAAAGAAAGAAAAGAAATGATGACGATA
ACATGCAAATTACAGCCTTTGAAAGCAGTCTGAACGGTCGATCATGTTGG
GAGACATCCTTCACGTTTTCGCAGTCCCTCGCGTCAGACCCTTGCACACT
GT
back to top

protein sequence of NO11G02580.4

>NO11G02580.4-protein ID=NO11G02580.4-protein|Name=NO11G02580.4|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MEEIVQGQLSELKKLWRSPRMLLSQSLNLAMIVFSALMIWKGLMFLTKSE
SPVVVVLSGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHR
VLEVHEKEDGKIELLTKGDNNRVGDRGLYAPGQLWLNREDILGRAAGYVY
LSAGKCVGGNMQAALAFLLEWTSTHSFVIWVFSAG*
back to top

mRNA from alignment at chr11:809696..811918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02580.4 ID=NO11G02580.4|Name=NO11G02580.4|organism=Nannochloropsis oceanica|type=mRNA|length=2223bp|location=Sequence derived from alignment at chr11:809696..811918- (Nannochloropsis oceanica)
TAATAAATGCCACCGCCCTGAATCCTTCGACTGCAGACCTTTTTTTCACG
ATCGGCATCGGCTTGCAAGGCTATGACTAGTTTTCTCCTCTACTCTGGGC
ATGCGAAACACCAGCTAAAGCAAGGCTCCTGCCTAACTCTCCCTCCCTCC
CATCCATCCTGCCCCGCTCCCTCTCTCCCCCGTTTCCACGATTCCACATA
AACACCAGCGCACCGCAAACCGCATTAGCCATGGAAGAAATTGTTCAAGG
ACAGCTTTCGGAGCTCAAAAAGCTGTGGCGGTCTCCGCGGATGCTCCTGT
CGCAATCTCTGAACCTGGCCATGATCGTTTTCTCCGCCCTGATGATTTGG
AAGGGGCTCATGTTTCTGACCAAGAGCGAGAGTCCCGTTGTCGTGGTGCT
CAGGTACGTGTACAAAGCGACGCGTCTTTTTACTTTCCCGTCTCTCGCTC
CGCCGCTGTGCGTGTGCTAAGAGTACGTCCTTGATTGGCAGGGGGGACCG
CGCCTGCACGCTAGGTCCTATGGCTCCTGTGTGCTTTTACCAACCTTCCC
GCGAAGGCCAATGAAAAAGGGCCTGCCGGAGATATGACGTTTCAACGATC
AGTCGCATCGCGCTCCCCCCCCTTTCGCGCGATACATTGTCTCGTCCTCC
TCATTCCTTCCTCTCTCCGCCTATGCATCCACAGTGGGTCTATGGAACCC
GCCTTTCAGAGGGGCGACATATTATTTCTAAACAATCAAGATGATCCGAT
CCGCGTAGGAGAGATCGTGGTGTTCAAGATCAAGGACCGTGACATTCCCA
TCGTCCATCGTGTACTGGAGGTGCACGAGAAGTGAGTGGAGCGAGGGAGG
GGAAGAGGGAAGAGGGAAGAAGGGAGGGCTGATAAATTAGCCGCCAGTTG
AGCAATGCAGCTGTTTTTGGATGCCGCTAGGGTCTTGACTCAGATATCAA
CATACACACACACACACATATACACACACACACACACACACACACACACA
TCTATCCATCCAACTCTGCAGGGAGGACGGCAAGATCGAGTTGCTGACCA
AAGGAGACAACAATCGTGTTGGCGACCGAGGCCTTTACGCGCCTGGCCAG
CTATGGTTGAACCGTGAGGATATCCTGGGACGGGCTGCCGGGTATGTTTA
TCTGAGTGCGGGGAAGTGTGTGGGTGGAAATATGCAGGCTGCCCTCGCAT
TTCTCCTCGAATGGACTAGCACACATTCCTTTGTTATTTGGGTCTTCTCC
GCAGGCTAATCATTTGATTATCTCACCATGTACAGGACATTGAGGTACCT
GGGCATGGTTACCATCATTCTCAACGACTATCCCATGCTCAAGTACGTAT
GAGTCCTTTCTTTCAGCCGTTGTCTGCCCATGTACCCACCCGTTTTTTAA
CTGTCGCCTTCTTTCCCGCGCCCTTCCCTTACCTTAGAAACAAAGAACTC
ATAAAGTCATGTATCCCCCCAAACCTCCCTTCCTTCTTTCCTCCCTCCAT
CCATCTTTCTACCTGCAGATATGTGCTGGTGGGTATAATGGGGCTCTTCG
TACTAACAAATAAAGAGGTATGCCTCACATAGGGGGGGGGAAGGATAAGG
GGAGGAAAAGGGGAGGGAGAACGAGATTGCGTGCACAATTTATTCAGACT
GTCATCCACACACGCCTCCACTAATTCTCTCCTCATTGGCAAAATTAAAT
TGTACCACTGCAGAGTTGATGAATCTTCCGCCACTGAAACAAGAAGAGCA
TAGCGGCTCTGCGGTAGCATGGGAAGACAGACAATGGAGCCCGTAGGCAA
GCGCAGACGTGAGAAACAAAAGGAGCGGAGGGAGTGAAATGAGAAATAGA
AGAGTGGATGGATGGATGGATGAAGGGATTGATAGACACAATAGGCTAGG
GTGAAAGGGGGCGAGGAGTGGAGAGAGGAATAGCAAAGGAGGTTAAGCAA
AGAAACCGACAGAAATAAAAATGTGCATATCAGACAAACGTCAGTCACAT
CGAGCCCCAAGCGAGTGCACGTTTCTATCGTCTTCGTCGCAGTGGGGAGA
GGGGAAAGAGAGGACGATGAAACGACACCCACAAAGAAGCAGTGAAAGAA
AGAAAAGAAATGATGACGATAACATGCAAATTACAGCCTTTGAAAGCAGT
CTGAACGGTCGATCATGTTGGGAGACATCCTTCACGTTTTCGCAGTCCCT
CGCGTCAGACCCTTGCACACTGT
back to top

Coding sequence (CDS) from alignment at chr11:809696..811918-

>NO11G02580.4 ID=NO11G02580.4|Name=NO11G02580.4|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at chr11:809696..811918- (Nannochloropsis oceanica)
ATGGAAGAAATTGTTCAAGGACAGCTTTCGGAGCTCAAAAAGCTGTGGCG
GTCTCCGCGGATGCTCCTGTCGCAATCTCTGAACCTGGCCATGATCGTTT
TCTCCGCCCTGATGATTTGGAAGGGGCTCATGTTTCTGACCAAGAGCGAG
AGTCCCGTTGTCGTGGTGCTCAGTGGGTCTATGGAACCCGCCTTTCAGAG
GGGCGACATATTATTTCTAAACAATCAAGATGATCCGATCCGCGTAGGAG
AGATCGTGGTGTTCAAGATCAAGGACCGTGACATTCCCATCGTCCATCGT
GTACTGGAGGTGCACGAGAAGGAGGACGGCAAGATCGAGTTGCTGACCAA
AGGAGACAACAATCGTGTTGGCGACCGAGGCCTTTACGCGCCTGGCCAGC
TATGGTTGAACCGTGAGGATATCCTGGGACGGGCTGCCGGGTATGTTTAT
CTGAGTGCGGGGAAGTGTGTGGGTGGAAATATGCAGGCTGCCCTCGCATT
TCTCCTCGAATGGACTAGCACACATTCCTTTGTTATTTGGGTCTTCTCCG
CAGGCTAA
back to top
Synonyms
Publications