NO11G02570.1, NO11G02570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02570.1
Unique NameNO11G02570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length573
Alignment locationchr11:808560..809132 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:808560..809132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02570.1 vs.
Match: XP_005853458.1 (signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526]; EKU22901.1 signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 357.5 bits (916), Expect = 2.700e-95
Identity = 179/190 (94.21%), Postives = 186/190 (97.89%), Query Frame = 0 
Query:    1 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGASLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGLTLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGVRML 191
            MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIA LDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGA+LYF+DYLGSMQK+NFGAQGYA+NFTLSIFDREY+EG+TL EAE +LEKAKKELAVRFLISQPKWIMKVVDKDGVR L
Sbjct:  173 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 362
The following BLAST results are available for this feature:
BLAST of NO11G02570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853458.12.700e-9594.21signal peptidase, endoplasmic reticulum-type [Nann... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02570NO11G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02570.1NO11G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02570.1.cds1NO11G02570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02570.1 ID=NO11G02570.1|Name=NO11G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=573bp
ATGGACACACTTCTGGGCATAAAAGGCGACGGATTCGTTCTCATTGCTGC
GGACGCCTCGGCGGCCCGTTCCATCCTTGTCTTCAAAACGGACCAAGACA
AAATAGCCCAGTTGGACAGCCATAAGCTCCTCGCCGCGGCGGGACCCAAC
GCTGACTGCAGCAATTTGACCGAGTACGTGCAGAAGAATATGGCATTGTA
TGAGTTTAACAACGATCTGAAGCTAGGCACCCATGCGGCGGCCAACTTTA
TCCGTCGCACTCTGGCCACGGCGTTGCGCAAGGGTCCGTACCAAACCAAT
TTGCTGCTGGGGGGGTTCGATGAGAAGGATGGGGCGTCTCTGTACTTTAT
GGATTACCTGGGCAGCATGCAGAAGCTTAACTTTGGCGCGCAGGGATACG
CAGCGAATTTTACGCTGTCGATCTTTGATAGGGAGTACAAGGAGGGGTTG
ACGCTTGCGGAGGCGGAGGAAATTTTGGAGAAGGCGAAGAAGGAGTTGGC
AGTACGATTTCTGATTTCTCAACCCAAGTGGATCATGAAAGTCGTGGATA
AGGATGGGGTGCGCATGCTTTAG
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protein sequence of NO11G02570.1

>NO11G02570.1-protein ID=NO11G02570.1-protein|Name=NO11G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAQLDSHKLLAAAGPN
ADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTN
LLLGGFDEKDGASLYFMDYLGSMQKLNFGAQGYAANFTLSIFDREYKEGL
TLAEAEEILEKAKKELAVRFLISQPKWIMKVVDKDGVRML*
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mRNA from alignment at chr11:808560..809132-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02570.1 ID=NO11G02570.1|Name=NO11G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=573bp|location=Sequence derived from alignment at chr11:808560..809132- (Nannochloropsis oceanica)
ATGGACACACTTCTGGGCATAAAAGGCGACGGATTCGTTCTCATTGCTGC
GGACGCCTCGGCGGCCCGTTCCATCCTTGTCTTCAAAACGGACCAAGACA
AAATAGCCCAGTTGGACAGCCATAAGCTCCTCGCCGCGGCGGGACCCAAC
GCTGACTGCAGCAATTTGACCGAGTACGTGCAGAAGAATATGGCATTGTA
TGAGTTTAACAACGATCTGAAGCTAGGCACCCATGCGGCGGCCAACTTTA
TCCGTCGCACTCTGGCCACGGCGTTGCGCAAGGGTCCGTACCAAACCAAT
TTGCTGCTGGGGGGGTTCGATGAGAAGGATGGGGCGTCTCTGTACTTTAT
GGATTACCTGGGCAGCATGCAGAAGCTTAACTTTGGCGCGCAGGGATACG
CAGCGAATTTTACGCTGTCGATCTTTGATAGGGAGTACAAGGAGGGGTTG
ACGCTTGCGGAGGCGGAGGAAATTTTGGAGAAGGCGAAGAAGGAGTTGGC
AGTACGATTTCTGATTTCTCAACCCAAGTGGATCATGAAAGTCGTGGATA
AGGATGGGGTGCGCATGCTTTAG
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Coding sequence (CDS) from alignment at chr11:808560..809132-

>NO11G02570.1 ID=NO11G02570.1|Name=NO11G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=573bp|location=Sequence derived from alignment at chr11:808560..809132- (Nannochloropsis oceanica)
ATGGACACACTTCTGGGCATAAAAGGCGACGGATTCGTTCTCATTGCTGC
GGACGCCTCGGCGGCCCGTTCCATCCTTGTCTTCAAAACGGACCAAGACA
AAATAGCCCAGTTGGACAGCCATAAGCTCCTCGCCGCGGCGGGACCCAAC
GCTGACTGCAGCAATTTGACCGAGTACGTGCAGAAGAATATGGCATTGTA
TGAGTTTAACAACGATCTGAAGCTAGGCACCCATGCGGCGGCCAACTTTA
TCCGTCGCACTCTGGCCACGGCGTTGCGCAAGGGTCCGTACCAAACCAAT
TTGCTGCTGGGGGGGTTCGATGAGAAGGATGGGGCGTCTCTGTACTTTAT
GGATTACCTGGGCAGCATGCAGAAGCTTAACTTTGGCGCGCAGGGATACG
CAGCGAATTTTACGCTGTCGATCTTTGATAGGGAGTACAAGGAGGGGTTG
ACGCTTGCGGAGGCGGAGGAAATTTTGGAGAAGGCGAAGAAGGAGTTGGC
AGTACGATTTCTGATTTCTCAACCCAAGTGGATCATGAAAGTCGTGGATA
AGGATGGGGTGCGCATGCTTTAG
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Synonyms
Publications