NO11G02560.1, NO11G02560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02560.1
Unique NameNO11G02560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2770
Alignment locationchr11:806258..809411 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:806258..809411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02560.1 vs.
Match: EWM24932.1 (hypothetical protein Naga_100086g5 [Nannochloropsis gaditana])

HSP 1 Score: 427.2 bits (1097), Expect = 7.300e-116
Identity = 287/522 (54.98%), Postives = 348/522 (66.67%), Query Frame = 0 
Query:    4 IGSNKRKKTSPPATTPPGTVTTSTTSSYKKVAKATSPRAATSTITPLPPSRIDALQASKAVQALLQHYAKHQAAVASKKGGKQDLLASEAGDYVLVQVALAKIPERVSPKPVPIRLPHPLHGSGKDDEEEHAVCLIVKEDDKAKVKRALAVMKMEGVSEVVGLQELRTDYREFQERRKLRDAFDLFLVDDRILPLLGKALGKTFFSKKKHPISLKIGGLLSSNPSSMATVGKRIIAAQQRTHLYRNHGNCLAIKVAKTSFPPAFVLANVLAGIEGAVEALPGKWKNVMAISLKTSASVALPLYQRLPQYLVKKP--IEPQEAVMQHLKEKEEEKENEMKKRMKMMKEGAAVTAAAAAAGGGGGGGGGKKRAGQGDVVVRAEKQNEGKDITKVSAAKSTTSSNK----------KAKMAG-----TANTAAAKEEATAAETTAARAGKKKRSRDDGASAAEAATVSAPAAAVSGSSLKKNAAGTAAGGNKKGVVDAAAKRGKPPAAEKGDETSQKQKRGKVKA 509
            +G +KRK TSPP+      +T  T          T     T+    LPPSR+DA QA++AV+ALLQH A+HQA VASKK  KQDLLASEAGDY+L+Q+ALAKIPERVSPKPVP+ LPHPLHGSG DD+E+HAVCLIVKE DK KV+RAL  MKM+GV EVVGLQELRTDY+EFQERR+LRDAFDLFLVDDRILPLLGKALGKTFFSKKKHP++LK+GGLLSSNP +MATVGKRIIAAQQRTHLYRNHGNCL++KVAKTSF PA  +ANVLAGIE AVEA PGKWKNVMAIS+KTS+SVALPLYQRLPQYL+KKP  +   +AV   L+  E  +E E  +  +     A +T  A           GKKR   G  V  A++ +  K   K S+    T + K          K+K++G     +  T  A  E+ AA+     +G+  R+ +  A+A + A     AAAV+  + +    G   GG  K  V++       P   KG +    +  GK KA
Sbjct:    8 VGGSKRKVTSPPSA-----ITARTNPKKSNTLSKTDEAQTTADKLTLPPSRVDATQATRAVEALLQHNARHQALVASKKS-KQDLLASEAGDYILIQIALAKIPERVSPKPVPLSLPHPLHGSGGDDDEDHAVCLIVKESDKGKVQRALNAMKMDGVREVVGLQELRTDYKEFQERRQLRDAFDLFLVDDRILPLLGKALGKTFFSKKKHPVALKLGGLLSSNPQAMATVGKRIIAAQQRTHLYRNHGNCLSVKVAKTSFRPAEAVANVLAGIEAAVEATPGKWKNVMAISVKTSSSVALPLYQRLPQYLIKKPGALGIGQAVHAQLEGNEPGEEGEEGEGKR-----ALLTVKALE-------NRGKKR---GPPVSEAKESSAKKTGHKGSSLAPRTDAAKSSQRGLPLDPKSKLSGGEMKTSVVTKGAIAESGAAKVVGDASGRPNRTGETVAAAKKRARQEDGAAAVALLASRAQTGGKIRGG--KAEVESLE---TGPVPRKGKKVVVAESEGKGKA 503
The following BLAST results are available for this feature:
BLAST of NO11G02560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24932.17.300e-11654.98hypothetical protein Naga_100086g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02560NO11G02560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02560.1NO11G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02560.1.cds1NO11G02560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02560.1.cds2NO11G02560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02560.1 ID=NO11G02560.1|Name=NO11G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2770bp
AGAGACCATGGCCGCCATCGGCAGCAACAAGCGGAAGAAGACCTCCCCAC
CCGCCACCACCCCCCCAGGCACTGTGACCACCAGCACCACCAGCAGTTAC
AAAAAGGTAGCCAAGGCTACATCTCCCCGTGCTGCCACATCCACTATCAC
CCCTCTTCCCCCCAGCCGTATCGATGCCTTGCAAGCCAGTAAGGCCGTGC
AAGCCCTTCTGCAACACTACGCCAAGCACCAAGCGGCCGTCGCGAGCAAG
AAGGGAGGCAAACAAGACCTGTTGGCATCCGAGGCAGGAGACTACGTTCT
GGTGCAAGTGGCATTAGCTAAGATACCCGAGCGAGTAAGCCCCAAGCCTG
TGCCTATTCGTTTGCCCCACCCTTTGCACGGCAGTGGGAAGGACGACGAG
GAGGAGCATGCGGTCTGTTTGATCGTCAAGGAGGACGACAAGGCCAAAGT
AAAAAGGGCGTTGGCAGTCATGAAGATGGAGGGGGTGAGCGAGGTGGTGG
GCTTACAGGAGCTCCGGACGGATTACAGAGAATTCCAGGAGCGGAGGAAG
CTAAGGGATGCCTTCGATCTCTTCCTCGTCGATGACCGCATCCTCCCCCT
CCTGGGCAAGGCGCTGGGTAAAACATTTTTCTCCAAGAAGAAGCATCCAA
TATCTCTTAAAATCGGCGGCCTCCTCTCGAGCAATCCCTCCTCCATGGCC
ACCGTGGGCAAGCGTATCATCGCCGCGCAACAACGCACGCACCTCTACCG
CAACCACGGGAACTGCCTGGCAATCAAAGTCGCCAAGACCTCCTTCCCTC
CCGCCTTCGTCCTCGCAAATGTCCTTGCCGGAATAGAAGGAGCGGTGGAA
GCCCTCCCTGGGAAATGGAAGAACGTTATGGCTATCTCTCTGAAGACAAG
CGCGTCTGTCGCCCTCCCTCTCTATCAGCGCCTCCCTCAGTACCTCGTTA
AAAAGCCGATTGAACCTCAGGAAGCAGTCATGCAGCATTTGAAAGAGAAG
GAAGAAGAGAAGGAGAACGAAATGAAGAAAAGAATGAAGATGATGAAGGA
GGGAGCTGCGGTGACGGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAG
GAGGAGGGGGTAAGAAGCGTGCTGGACAAGGGGACGTGGTAGTGAGGGCA
GAGAAGCAGAACGAGGGGAAAGATATCACAAAAGTATCTGCAGCGAAGAG
CACTACCAGCAGCAACAAAAAGGCCAAAATGGCTGGAACGGCTAATACTG
CTGCCGCAAAAGAGGAGGCAACAGCAGCAGAAACAACCGCCGCACGCGCG
GGCAAGAAGAAGAGGTCTCGCGATGATGGTGCTTCAGCAGCAGAAGCCGC
AACTGTGTCGGCACCAGCAGCGGCAGTAAGTGGAAGCAGCTTAAAAAAGA
ATGCTGCCGGCACTGCTGCAGGAGGCAATAAGAAGGGTGTTGTGGATGCT
GCGGCCAAGAGGGGCAAGCCACCCGCGGCGGAGAAAGGAGACGAGACGTC
TCAGAAGCAGAAGAGGGGAAAGGTCAAGGCTTGAATTGAAGTGCCAGAGT
CTAAAGGAGAGATAAAAACAAAATCGTGTCGCTTTCAAAGTGTGGTTTGG
GGATGTGGCTTGTGAGTGAGCCGCTCAGAGTTTCCATGCGTGTGTGCATG
TGGTGTGTGAGAAGACACAGAAGACTGTCTCTGATTTATTTAGCCTGCCG
AAAACAAAATCATGGTGAAAGAAAAAGGGCAAGAAATAGAAAAGAAATCA
GAGGCCTACAGAAACAGTTTCCAAATTTCCCCATCTGTTACGTTACTTCT
CTTGCCTCATCAAGAGATGTCTTTTTCTTCGAATCCCGCTTCCTCCCCTC
CCTCTTCGCTGCCCTCCACCTTCCGCCTCTGCCTATGTACGTCCGTCCAT
TCATCCCCCCCTTCTCATCTAAAGCATGCGCACCCCATCCTTATCCACGA
CTTTCATGATCCACTTGGGTTGAGAAATCAGAAATCGTACTGCCAACTCC
TTCTTCGCCTTCTCCAAAATTTCCTCCGCCTCCGCAAGCGTCAACCCCTC
CTTGTACTCCCTATCAAAGATCGACAGCGTAAAATTCGCTGCGTATCCCT
GCGCGCCAAAGTTAAGCTTCTGCATGCTGCCCAGGTAATCCATAAAGTAC
AGAGACGCCCCATCCTTCTCATCGAACCCCCCCAGCAGCAAATTGGTTTG
GTACGGACCCTTGCGCAACGCCGTGGCCAGAGTGCGACGGATAAAGTTGG
CCGCCGCATGGGTGCCTAGCTTCAGATCGTTGTTAAACTCATACAATGCC
ATATTCTTCTGCACGTACTCGGTCAAATTGCTGCAGTCAGCGTTGGGTCC
CGCCGCGGCGAGGAGCTTATGGCTGTCCAACTGGGCTATTTTGTCTTGGT
CCGTTTTGAAGACAAGGATGGAACGGGCCGCCGAGGCGTCCGCAGCAATG
AGAACGAATCCGTCGCCTTTTATGCCCAGAAGTGTGTCCATGGTAAAGGC
CTCTATGTGTCGTGGCGTTGCCTGTGGGTATTGGGGAAGGTGGATGGGTT
GTTGATGATGATGCTGGCTGGGACGGAGCGTGAGGGAGGCGCCAGACGAG
GCAACAGCGGTAACCGACGACGGGGCGTCGTAGAATACAGCGCACGACTT
ACATATGTGCCTGTATGTATACTCTGCTGGGTGAGTCCGAATGTTTATGT
GAGTGCAAGTATGCACATATACACAGCGTGCGTCTCGGACGAAGACGAAG
AAGCGAGGAGCTCATCGCCG
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protein sequence of NO11G02560.1

>NO11G02560.1-protein ID=NO11G02560.1-protein|Name=NO11G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MAAIGSNKRKKTSPPATTPPGTVTTSTTSSYKKVAKATSPRAATSTITPL
PPSRIDALQASKAVQALLQHYAKHQAAVASKKGGKQDLLASEAGDYVLVQ
VALAKIPERVSPKPVPIRLPHPLHGSGKDDEEEHAVCLIVKEDDKAKVKR
ALAVMKMEGVSEVVGLQELRTDYREFQERRKLRDAFDLFLVDDRILPLLG
KALGKTFFSKKKHPISLKIGGLLSSNPSSMATVGKRIIAAQQRTHLYRNH
GNCLAIKVAKTSFPPAFVLANVLAGIEGAVEALPGKWKNVMAISLKTSAS
VALPLYQRLPQYLVKKPIEPQEAVMQHLKEKEEEKENEMKKRMKMMKEGA
AVTAAAAAAGGGGGGGGGKKRAGQGDVVVRAEKQNEGKDITKVSAAKSTT
SSNKKAKMAGTANTAAAKEEATAAETTAARAGKKKRSRDDGASAAEAATV
SAPAAAVSGSSLKKNAAGTAAGGNKKGVVDAAAKRGKPPAAEKGDETSQK
QKRGKVKA*
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mRNA from alignment at chr11:806258..809411+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02560.1 ID=NO11G02560.1|Name=NO11G02560.1|organism=Nannochloropsis oceanica|type=mRNA|length=3154bp|location=Sequence derived from alignment at chr11:806258..809411+ (Nannochloropsis oceanica)
AGAGACCATGGCCGCCATCGGCAGCAACAAGCGGAAGAAGACCTCCCCAC
CCGCCACCACCCCCCCAGGCACTGTGACCACCAGCACCACCAGCAGTTAC
AAAAAGGTAGCCAAGGCTACATCTCCCCGTGCTGCCACATCCACTATCAC
CCCTCTTCCCCCCAGCCGTATCGATGCCTTGCAAGCCAGTAAGGCCGTGC
AAGCCCTTCTGCAACACTACGCCAAGCACCAAGCGGCCGTCGCGAGCAAG
AAGGGAGGCAAACAAGACCTGTTGGCATCCGAGGCAGGAGACTACGTTCT
GGTGCAAGTGGCATTAGCTAAGATACCCGAGCGAGTAAGCCCCAAGCCTG
TGCCTATTCGTTTGCCCCACCCTTTGCACGGCAGTGGGAAGGACGACGAG
GAGGAGCATGCGGTCTGTTTGATCGTCAAGGAGGACGACAAGGCCAAAGT
AAAAAGGGCGTTGGCAGTCATGAAGATGGAGGGGGTGAGCGAGGTGGTGG
GCTTACAGGAGCTCCGGACGGATTACAGAGAATTCCAGGAGCGGAGGAAG
CTAAGGGATGGTAAGTGATCGAACGGATATTTTGGGTATGGGAGGTTTTG
ATGGTCACGGGGCCTTGTCTGTCATTTTACCCGTGCGAACAGTGCACACA
CACATGAGTACATTTCTTGTTCTGTTTGGATCTTTCCCTGTTTTTGGTCC
ATCCTCCCTGAATCTTAATTCCCATTTCGAAAGGCGAAAGGCTCCCGCTG
ATGACTAGTACATGCACCACACCGAACCGCCCCTCGGGGCGGCCTGTGGA
CACTTGTTACTCCATAAATCACCAATTTATCTTGACTGAGGGAACCACAT
CTCTATCAAAAAAAAAATCTCCCTCTTCTCGTCCGTCCTTCCCTCACAGC
CTCCATACTCTCCCTCCACTCCCCCCCCCCCCCTCAAAACACAGCCTTCG
ATCTCTTCCTCGTCGATGACCGCATCCTCCCCCTCCTGGGCAAGGCGCTG
GGTAAAACATTTTTCTCCAAGAAGAAGCATCCAATATCTCTTAAAATCGG
CGGCCTCCTCTCGAGCAATCCCTCCTCCATGGCCACCGTGGGCAAGCGTA
TCATCGCCGCGCAACAACGCACGCACCTCTACCGCAACCACGGGAACTGC
CTGGCAATCAAAGTCGCCAAGACCTCCTTCCCTCCCGCCTTCGTCCTCGC
AAATGTCCTTGCCGGAATAGAAGGAGCGGTGGAAGCCCTCCCTGGGAAAT
GGAAGAACGTTATGGCTATCTCTCTGAAGACAAGCGCGTCTGTCGCCCTC
CCTCTCTATCAGCGCCTCCCTCAGTACCTCGTTAAAAAGCCGATTGAACC
TCAGGAAGCAGTCATGCAGCATTTGAAAGAGAAGGAAGAAGAGAAGGAGA
ACGAAATGAAGAAAAGAATGAAGATGATGAAGGAGGGAGCTGCGGTGACG
GCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGGGGTAAGAA
GCGTGCTGGACAAGGGGACGTGGTAGTGAGGGCAGAGAAGCAGAACGAGG
GGAAAGATATCACAAAAGTATCTGCAGCGAAGAGCACTACCAGCAGCAAC
AAAAAGGCCAAAATGGCTGGAACGGCTAATACTGCTGCCGCAAAAGAGGA
GGCAACAGCAGCAGAAACAACCGCCGCACGCGCGGGCAAGAAGAAGAGGT
CTCGCGATGATGGTGCTTCAGCAGCAGAAGCCGCAACTGTGTCGGCACCA
GCAGCGGCAGTAAGTGGAAGCAGCTTAAAAAAGAATGCTGCCGGCACTGC
TGCAGGAGGCAATAAGAAGGGTGTTGTGGATGCTGCGGCCAAGAGGGGCA
AGCCACCCGCGGCGGAGAAAGGAGACGAGACGTCTCAGAAGCAGAAGAGG
GGAAAGGTCAAGGCTTGAATTGAAGTGCCAGAGTCTAAAGGAGAGATAAA
AACAAAATCGTGTCGCTTTCAAAGTGTGGTTTGGGGATGTGGCTTGTGAG
TGAGCCGCTCAGAGTTTCCATGCGTGTGTGCATGTGGTGTGTGAGAAGAC
ACAGAAGACTGTCTCTGATTTATTTAGCCTGCCGAAAACAAAATCATGGT
GAAAGAAAAAGGGCAAGAAATAGAAAAGAAATCAGAGGCCTACAGAAACA
GTTTCCAAATTTCCCCATCTGTTACGTTACTTCTCTTGCCTCATCAAGAG
ATGTCTTTTTCTTCGAATCCCGCTTCCTCCCCTCCCTCTTCGCTGCCCTC
CACCTTCCGCCTCTGCCTATGTACGTCCGTCCATTCATCCCCCCCTTCTC
ATCTAAAGCATGCGCACCCCATCCTTATCCACGACTTTCATGATCCACTT
GGGTTGAGAAATCAGAAATCGTACTGCCAACTCCTTCTTCGCCTTCTCCA
AAATTTCCTCCGCCTCCGCAAGCGTCAACCCCTCCTTGTACTCCCTATCA
AAGATCGACAGCGTAAAATTCGCTGCGTATCCCTGCGCGCCAAAGTTAAG
CTTCTGCATGCTGCCCAGGTAATCCATAAAGTACAGAGACGCCCCATCCT
TCTCATCGAACCCCCCCAGCAGCAAATTGGTTTGGTACGGACCCTTGCGC
AACGCCGTGGCCAGAGTGCGACGGATAAAGTTGGCCGCCGCATGGGTGCC
TAGCTTCAGATCGTTGTTAAACTCATACAATGCCATATTCTTCTGCACGT
ACTCGGTCAAATTGCTGCAGTCAGCGTTGGGTCCCGCCGCGGCGAGGAGC
TTATGGCTGTCCAACTGGGCTATTTTGTCTTGGTCCGTTTTGAAGACAAG
GATGGAACGGGCCGCCGAGGCGTCCGCAGCAATGAGAACGAATCCGTCGC
CTTTTATGCCCAGAAGTGTGTCCATGGTAAAGGCCTCTATGTGTCGTGGC
GTTGCCTGTGGGTATTGGGGAAGGTGGATGGGTTGTTGATGATGATGCTG
GCTGGGACGGAGCGTGAGGGAGGCGCCAGACGAGGCAACAGCGGTAACCG
ACGACGGGGCGTCGTAGAATACAGCGCACGACTTACATATGTGCCTGTAT
GTATACTCTGCTGGGTGAGTCCGAATGTTTATGTGAGTGCAAGTATGCAC
ATATACACAGCGTGCGTCTCGGACGAAGACGAAGAAGCGAGGAGCTCATC
GCCG
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Coding sequence (CDS) from alignment at chr11:806258..809411+

>NO11G02560.1 ID=NO11G02560.1|Name=NO11G02560.1|organism=Nannochloropsis oceanica|type=CDS|length=1527bp|location=Sequence derived from alignment at chr11:806258..809411+ (Nannochloropsis oceanica)
ATGGCCGCCATCGGCAGCAACAAGCGGAAGAAGACCTCCCCACCCGCCAC
CACCCCCCCAGGCACTGTGACCACCAGCACCACCAGCAGTTACAAAAAGG
TAGCCAAGGCTACATCTCCCCGTGCTGCCACATCCACTATCACCCCTCTT
CCCCCCAGCCGTATCGATGCCTTGCAAGCCAGTAAGGCCGTGCAAGCCCT
TCTGCAACACTACGCCAAGCACCAAGCGGCCGTCGCGAGCAAGAAGGGAG
GCAAACAAGACCTGTTGGCATCCGAGGCAGGAGACTACGTTCTGGTGCAA
GTGGCATTAGCTAAGATACCCGAGCGAGTAAGCCCCAAGCCTGTGCCTAT
TCGTTTGCCCCACCCTTTGCACGGCAGTGGGAAGGACGACGAGGAGGAGC
ATGCGGTCTGTTTGATCGTCAAGGAGGACGACAAGGCCAAAGTAAAAAGG
GCGTTGGCAGTCATGAAGATGGAGGGGGTGAGCGAGGTGGTGGGCTTACA
GGAGCTCCGGACGGATTACAGAGAATTCCAGGAGCGGAGGAAGCTAAGGG
ATGCCTTCGATCTCTTCCTCGTCGATGACCGCATCCTCCCCCTCCTGGGC
AAGGCGCTGGGTAAAACATTTTTCTCCAAGAAGAAGCATCCAATATCTCT
TAAAATCGGCGGCCTCCTCTCGAGCAATCCCTCCTCCATGGCCACCGTGG
GCAAGCGTATCATCGCCGCGCAACAACGCACGCACCTCTACCGCAACCAC
GGGAACTGCCTGGCAATCAAAGTCGCCAAGACCTCCTTCCCTCCCGCCTT
CGTCCTCGCAAATGTCCTTGCCGGAATAGAAGGAGCGGTGGAAGCCCTCC
CTGGGAAATGGAAGAACGTTATGGCTATCTCTCTGAAGACAAGCGCGTCT
GTCGCCCTCCCTCTCTATCAGCGCCTCCCTCAGTACCTCGTTAAAAAGCC
GATTGAACCTCAGGAAGCAGTCATGCAGCATTTGAAAGAGAAGGAAGAAG
AGAAGGAGAACGAAATGAAGAAAAGAATGAAGATGATGAAGGAGGGAGCT
GCGGTGACGGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGG
GGGTAAGAAGCGTGCTGGACAAGGGGACGTGGTAGTGAGGGCAGAGAAGC
AGAACGAGGGGAAAGATATCACAAAAGTATCTGCAGCGAAGAGCACTACC
AGCAGCAACAAAAAGGCCAAAATGGCTGGAACGGCTAATACTGCTGCCGC
AAAAGAGGAGGCAACAGCAGCAGAAACAACCGCCGCACGCGCGGGCAAGA
AGAAGAGGTCTCGCGATGATGGTGCTTCAGCAGCAGAAGCCGCAACTGTG
TCGGCACCAGCAGCGGCAGTAAGTGGAAGCAGCTTAAAAAAGAATGCTGC
CGGCACTGCTGCAGGAGGCAATAAGAAGGGTGTTGTGGATGCTGCGGCCA
AGAGGGGCAAGCCACCCGCGGCGGAGAAAGGAGACGAGACGTCTCAGAAG
CAGAAGAGGGGAAAGGTCAAGGCTTGA
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Synonyms
Publications