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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:801810..804009 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02540.1 vs.
Match: EWM24943.1 (hypothetical protein Naga_100086g2 [Nannochloropsis gaditana]) HSP 1 Score: 122.5 bits (306), Expect = 3.600e-24 Identity = 83/214 (38.79%), Postives = 125/214 (58.41%), Query Frame = 0
Query: 31 LIHIRLADGVDRSPEASHPSSSYLNPPGPPQHPSSTSATKSTITRPPARPYGPRLLRGLAGDIFSVTEGGYHYKLKMFDSVSQRKTTENEPLLLGVWDRWEVVEREEEV--------VGEMGKRRGKALSLRMVYMDGATCMANTSVVRTVLVDFLCAA---SPIPRADE--SAASAAIITDGDA---VALSNDDDSTGTNLVDRVVKAREEGR 229
++HIRLADGVDR S+ PP P P T ++ ST PARP GPRLLR + G+ F++T+ G++Y +KMF +V++R+ +EN P++LGVWD+WE+V +EE ++G+ G ++S RM+Y G C NTSV+++V VDFLC A + +P D SA A ++D D V ++ T+L R A++ G+
Sbjct: 34 VVHIRLADGVDR----RSLQSTAEEPPTIP--PVDTPSSTSTPLPAPARPSGPRLLREMDGESFALTKDGHNYNVKMFQTVTRRRPSENTPVVLGVWDKWEMVNGKEEAEDVNIACKEAQVGEGHGVSMSFRMLYRHGDPCPHNTSVLQSVTVDFLCLAPSFTTVPGLDSGASAGKPASVSDMDGSSHVTTWEEEADGQTSLGTRPGVAKDMGQ 241
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02540.1 ID=NO11G02540.1|Name=NO11G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2200bp
GTTTGGTTGAGTTGAGAGTATCAGATTATCGTATATTGCTTTGACTTCAA
TATTCATTTTTACATGCACCCGCGAGGATGGCTTTGAAGGCGTGCGGGAG
CACGCCGACACTCTACATATAGATGATGGATGCACTTTTTCTAACCTCCT
GCCTTGCGAAGTCCTTTATGGCTGGGTCCCCTTGGTTCAGCAGTGGAACC
AAAAGGCAAAACAAAGACGGTACTCGGAATTGCCCTTCTGTCGCGTTATT
TCTTTAGGTCCGCCCTCAAGGTCCACGAAAGCCACCAGCGAGGTGTGCAA
GTCCTAGAGGACGTCAGGTTGCATGCGATAGTTCTCTAGGAGTGAAACGG
CAGAAAAAAGAACTATATATTGTATGTGATAGTATAGTATAATACCATGG
CCACTATCATCATCCTCCCCTCCCCTCATTTGCCTAATTCAACCCTGCTC
TGTCTGCCCTTTACCGATATAGAGAGACTCTCAGCTATATCACAACGGTA
CCCAACCACAGGCATATATCACCGCATTTTGCTAGCCCGGAGACCGTTGC
CCGCTTCTATCGCCCACAAATCGCTGCTGCTTGAACAAAATGGCCCACAC
AGAGCGCTCCTCCCTCGTCGTTTTCCACCTCTTATCCCTGCTACTTCTCA
GCACTCATGCCCTTGATACCGATGTGAACCTCATTCATATCCGCCTGGCC
GACGGGGTCGACCGTTCACCGGAAGCCTCCCACCCTTCTTCCTCCTATCT
TAATCCCCCCGGTCCGCCTCAGCACCCTTCCTCCACCTCTGCCACCAAGA
GCACCATTACACGCCCCCCGGCCCGGCCGTACGGCCCTCGACTCTTGCGT
GGGCTGGCCGGAGATATCTTTAGCGTGACGGAAGGAGGATATCATTACAA
ACTGAAAATGTTTGACAGCGTCTCACAAAGAAAGACGACGGAAAATGAAC
CCTTGTTGTTGGGGGTGTGGGATCGGTGGGAAGTTGTGGAGAGAGAGGAG
GAAGTGGTAGGGGAAATGGGGAAAAGGAGGGGAAAGGCTTTGTCGCTTCG
GATGGTATACATGGATGGGGCCACATGCATGGCGAACACGAGCGTCGTTC
GCACTGTATTGGTGGACTTCTTGTGTGCCGCTTCCCCTATTCCTCGTGCT
GATGAATCTGCTGCTTCTGCTGCTATCATTACCGATGGTGATGCTGTTGC
TCTTTCCAATGATGATGACAGCACTGGCACGAATCTCGTCGATCGAGTTG
TAAAGGCAAGGGAGGAGGGCAGAGTAGTCCAAGAGGGTGAAGACGCGGCT
GCAGTCTTCGTTCAGGAGGTGCAGCAGCAGCCGCAGCAGATATCAGCCGC
AACAGCAACAGCAACAGCAATTTTATCGAAGATGGAAGCAGAGGCAGCAA
GCTATATTTCTACACACACTTATTCTCCGTCTCCTCCCCCTCCTCCTCCA
CCTCAAGAAGTAGTCGATTTTAGGTTATCTGACGCCCGGGAATCCTCGGT
TTGTCTGCATCACCTCACTCTCCACTCTCCTATCCCTTGCGCGGTCCTTC
ACAAAGAGCTTGCTTCCTTTGCAACGCAAGACTTGATAAAAGGAGAGGAC
GATGCGGAGGAGGAGGCGAAGAGAGGAGGGGGAACAAAGAGACAAAGGAA
GAAGAAGAGCAAGGGGAAGAAGGTGGGGAGGAAAAGAGGGATGGTTCCCC
TGATAGAAGGAGTGACACGATGGGTGGAAGAGTTTTGGGGAAAGGCGGTG
AGAGCAACGGCTAATAGTTTAGCCAGCTCCAATGACATCACATCGTCTTC
CTCCTCCTCCGCCTCGTCTTCTGTCTGTACTTGCCCTTGTGCTGTTGACA
CAGGTGCCGCTGCTCCTGCTGCTCCTGCTTCTGTTGCTGTTTGCGGCGAG
GTAGGGGAGAAGGAAAAGGACCGAATCGAGGCTCTGATAAATGAGGTAGG
TGAGCTGCGTTCGCAGCTAGCGGATTTCTTAGAAGAGATGCGAGGAGGGA
GGGAGGGAGGGAGGGAGGAGTGGGATCGATGATGGTTGCACCGATGGATT
GCGAGGGAGATGTGCCATGCGATCTAGTGTAAAGTAGAAGATAAACAGGA
GAAGATGATGGGTGAGAGAAGGCGGGGGGGAGGTGGCGGTTGATTTTTCG
GGAAAGATTACAAAATAAAAAGGCTGCATGTACATGCACGCGGGGTAGGT back to topprotein sequence of NO11G02540.1 >NO11G02540.1-protein ID=NO11G02540.1-protein|Name=NO11G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=481bp
MAHTERSSLVVFHLLSLLLLSTHALDTDVNLIHIRLADGVDRSPEASHPS
SSYLNPPGPPQHPSSTSATKSTITRPPARPYGPRLLRGLAGDIFSVTEGG
YHYKLKMFDSVSQRKTTENEPLLLGVWDRWEVVEREEEVVGEMGKRRGKA
LSLRMVYMDGATCMANTSVVRTVLVDFLCAASPIPRADESAASAAIITDG
DAVALSNDDDSTGTNLVDRVVKAREEGRVVQEGEDAAAVFVQEVQQQPQQ
ISAATATATAILSKMEAEAASYISTHTYSPSPPPPPPPQEVVDFRLSDAR
ESSVCLHHLTLHSPIPCAVLHKELASFATQDLIKGEDDAEEEAKRGGGTK
RQRKKKSKGKKVGRKRGMVPLIEGVTRWVEEFWGKAVRATANSLASSNDI
TSSSSSSASSSVCTCPCAVDTGAAAPAAPASVAVCGEVGEKEKDRIEALI
NEVGELRSQLADFLEEMRGGREGGREEWDR* back to topmRNA from alignment at chr11:801810..804009+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02540.1 ID=NO11G02540.1|Name=NO11G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2200bp|location=Sequence derived from alignment at chr11:801810..804009+ (Nannochloropsis oceanica)
GTTTGGTTGAGTTGAGAGTATCAGATTATCGTATATTGCTTTGACTTCAA
TATTCATTTTTACATGCACCCGCGAGGATGGCTTTGAAGGCGTGCGGGAG
CACGCCGACACTCTACATATAGATGATGGATGCACTTTTTCTAACCTCCT
GCCTTGCGAAGTCCTTTATGGCTGGGTCCCCTTGGTTCAGCAGTGGAACC
AAAAGGCAAAACAAAGACGGTACTCGGAATTGCCCTTCTGTCGCGTTATT
TCTTTAGGTCCGCCCTCAAGGTCCACGAAAGCCACCAGCGAGGTGTGCAA
GTCCTAGAGGACGTCAGGTTGCATGCGATAGTTCTCTAGGAGTGAAACGG
CAGAAAAAAGAACTATATATTGTATGTGATAGTATAGTATAATACCATGG
CCACTATCATCATCCTCCCCTCCCCTCATTTGCCTAATTCAACCCTGCTC
TGTCTGCCCTTTACCGATATAGAGAGACTCTCAGCTATATCACAACGGTA
CCCAACCACAGGCATATATCACCGCATTTTGCTAGCCCGGAGACCGTTGC
CCGCTTCTATCGCCCACAAATCGCTGCTGCTTGAACAAAATGGCCCACAC
AGAGCGCTCCTCCCTCGTCGTTTTCCACCTCTTATCCCTGCTACTTCTCA
GCACTCATGCCCTTGATACCGATGTGAACCTCATTCATATCCGCCTGGCC
GACGGGGTCGACCGTTCACCGGAAGCCTCCCACCCTTCTTCCTCCTATCT
TAATCCCCCCGGTCCGCCTCAGCACCCTTCCTCCACCTCTGCCACCAAGA
GCACCATTACACGCCCCCCGGCCCGGCCGTACGGCCCTCGACTCTTGCGT
GGGCTGGCCGGAGATATCTTTAGCGTGACGGAAGGAGGATATCATTACAA
ACTGAAAATGTTTGACAGCGTCTCACAAAGAAAGACGACGGAAAATGAAC
CCTTGTTGTTGGGGGTGTGGGATCGGTGGGAAGTTGTGGAGAGAGAGGAG
GAAGTGGTAGGGGAAATGGGGAAAAGGAGGGGAAAGGCTTTGTCGCTTCG
GATGGTATACATGGATGGGGCCACATGCATGGCGAACACGAGCGTCGTTC
GCACTGTATTGGTGGACTTCTTGTGTGCCGCTTCCCCTATTCCTCGTGCT
GATGAATCTGCTGCTTCTGCTGCTATCATTACCGATGGTGATGCTGTTGC
TCTTTCCAATGATGATGACAGCACTGGCACGAATCTCGTCGATCGAGTTG
TAAAGGCAAGGGAGGAGGGCAGAGTAGTCCAAGAGGGTGAAGACGCGGCT
GCAGTCTTCGTTCAGGAGGTGCAGCAGCAGCCGCAGCAGATATCAGCCGC
AACAGCAACAGCAACAGCAATTTTATCGAAGATGGAAGCAGAGGCAGCAA
GCTATATTTCTACACACACTTATTCTCCGTCTCCTCCCCCTCCTCCTCCA
CCTCAAGAAGTAGTCGATTTTAGGTTATCTGACGCCCGGGAATCCTCGGT
TTGTCTGCATCACCTCACTCTCCACTCTCCTATCCCTTGCGCGGTCCTTC
ACAAAGAGCTTGCTTCCTTTGCAACGCAAGACTTGATAAAAGGAGAGGAC
GATGCGGAGGAGGAGGCGAAGAGAGGAGGGGGAACAAAGAGACAAAGGAA
GAAGAAGAGCAAGGGGAAGAAGGTGGGGAGGAAAAGAGGGATGGTTCCCC
TGATAGAAGGAGTGACACGATGGGTGGAAGAGTTTTGGGGAAAGGCGGTG
AGAGCAACGGCTAATAGTTTAGCCAGCTCCAATGACATCACATCGTCTTC
CTCCTCCTCCGCCTCGTCTTCTGTCTGTACTTGCCCTTGTGCTGTTGACA
CAGGTGCCGCTGCTCCTGCTGCTCCTGCTTCTGTTGCTGTTTGCGGCGAG
GTAGGGGAGAAGGAAAAGGACCGAATCGAGGCTCTGATAAATGAGGTAGG
TGAGCTGCGTTCGCAGCTAGCGGATTTCTTAGAAGAGATGCGAGGAGGGA
GGGAGGGAGGGAGGGAGGAGTGGGATCGATGATGGTTGCACCGATGGATT
GCGAGGGAGATGTGCCATGCGATCTAGTGTAAAGTAGAAGATAAACAGGA
GAAGATGATGGGTGAGAGAAGGCGGGGGGGAGGTGGCGGTTGATTTTTCG
GGAAAGATTACAAAATAAAAAGGCTGCATGTACATGCACGCGGGGTAGGT
back to topCoding sequence (CDS) from alignment at chr11:801810..804009+ >NO11G02540.1 ID=NO11G02540.1|Name=NO11G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1443bp|location=Sequence derived from alignment at chr11:801810..804009+ (Nannochloropsis oceanica)
ATGGCCCACACAGAGCGCTCCTCCCTCGTCGTTTTCCACCTCTTATCCCT
GCTACTTCTCAGCACTCATGCCCTTGATACCGATGTGAACCTCATTCATA
TCCGCCTGGCCGACGGGGTCGACCGTTCACCGGAAGCCTCCCACCCTTCT
TCCTCCTATCTTAATCCCCCCGGTCCGCCTCAGCACCCTTCCTCCACCTC
TGCCACCAAGAGCACCATTACACGCCCCCCGGCCCGGCCGTACGGCCCTC
GACTCTTGCGTGGGCTGGCCGGAGATATCTTTAGCGTGACGGAAGGAGGA
TATCATTACAAACTGAAAATGTTTGACAGCGTCTCACAAAGAAAGACGAC
GGAAAATGAACCCTTGTTGTTGGGGGTGTGGGATCGGTGGGAAGTTGTGG
AGAGAGAGGAGGAAGTGGTAGGGGAAATGGGGAAAAGGAGGGGAAAGGCT
TTGTCGCTTCGGATGGTATACATGGATGGGGCCACATGCATGGCGAACAC
GAGCGTCGTTCGCACTGTATTGGTGGACTTCTTGTGTGCCGCTTCCCCTA
TTCCTCGTGCTGATGAATCTGCTGCTTCTGCTGCTATCATTACCGATGGT
GATGCTGTTGCTCTTTCCAATGATGATGACAGCACTGGCACGAATCTCGT
CGATCGAGTTGTAAAGGCAAGGGAGGAGGGCAGAGTAGTCCAAGAGGGTG
AAGACGCGGCTGCAGTCTTCGTTCAGGAGGTGCAGCAGCAGCCGCAGCAG
ATATCAGCCGCAACAGCAACAGCAACAGCAATTTTATCGAAGATGGAAGC
AGAGGCAGCAAGCTATATTTCTACACACACTTATTCTCCGTCTCCTCCCC
CTCCTCCTCCACCTCAAGAAGTAGTCGATTTTAGGTTATCTGACGCCCGG
GAATCCTCGGTTTGTCTGCATCACCTCACTCTCCACTCTCCTATCCCTTG
CGCGGTCCTTCACAAAGAGCTTGCTTCCTTTGCAACGCAAGACTTGATAA
AAGGAGAGGACGATGCGGAGGAGGAGGCGAAGAGAGGAGGGGGAACAAAG
AGACAAAGGAAGAAGAAGAGCAAGGGGAAGAAGGTGGGGAGGAAAAGAGG
GATGGTTCCCCTGATAGAAGGAGTGACACGATGGGTGGAAGAGTTTTGGG
GAAAGGCGGTGAGAGCAACGGCTAATAGTTTAGCCAGCTCCAATGACATC
ACATCGTCTTCCTCCTCCTCCGCCTCGTCTTCTGTCTGTACTTGCCCTTG
TGCTGTTGACACAGGTGCCGCTGCTCCTGCTGCTCCTGCTTCTGTTGCTG
TTTGCGGCGAGGTAGGGGAGAAGGAAAAGGACCGAATCGAGGCTCTGATA
AATGAGGTAGGTGAGCTGCGTTCGCAGCTAGCGGATTTCTTAGAAGAGAT
GCGAGGAGGGAGGGAGGGAGGGAGGGAGGAGTGGGATCGATGA back to top
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