NO11G02500.1, NO11G02500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02500.1
Unique NameNO11G02500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1642
Alignment locationchr11:794705..796655 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:794705..796655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02500.1 vs.
Match: EWM24921.1 (uncharacterized protein Naga_100092g2 [Nannochloropsis gaditana])

HSP 1 Score: 298.5 bits (763), Expect = 2.400e-77
Identity = 179/323 (55.42%), Postives = 220/323 (68.11%), Query Frame = 0 
Query:   18 VFVVTLLPKASNAFAF------PSTIHAVPLPTRPSYIISPSAATATTSTSSTSRPTTTT------------LHPVLHALHQTASRAAPPGSTRRSIIKKVARGMLAL-----GGGVGTAAT----AASAAGVAAPDKTPGKYKNLGSGGTSTLEREDQFNGISSRSSDSADENVKKEVLDTTRKWLETVTSNKPTAAVETSALYAKDAVLWGTVSEQLRVTPGEIRSYFDFFAGLPGLRVAAYQPYVRVWGS----DTAINDGYYVFAWQGPDGVEVQKHARFSFVYRREGRREGTWKIVDHHSSLLPTAPAKLVKATTVLL 310
            V + +LLP  + +F        PS+ H + +   P   ++ + A+  T T +++    T             + PVLHAL QTASRAAPPGSTRRS++KK ARG+L L     GG +  AA     A + AGVAA DKTPG+YKN+  G  S +E          RS+   DE VK+EVL TT++WL+TVTSN+ TA+ ET+ALYA DAVLWGTVSE+LRV P EIRSYFDFFA LPGLRVAAYQPYVR++G+    +TAINDGYYVFAW+GPDG EVQKHAR+SFVYR+EG   G W IVDHHSSLLPTAPA L KATTV++
Sbjct:   20 VLLASLLPGIAFSFKLGIIPSGPSSPHPISVTRSPRTAVASTTASTDTGTLTSNSHVQTKKRRREKATGLGKIRPVLHALQQTASRAAPPGSTRRSLVKKFARGVLFLPPLFLGGALNIAAPSGAMAIAPAGVAAVDKTPGRYKNVAMG--SMVEPRP-------RSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEG---GKWMIVDHHSSLLPTAPAGLAKATTVVM 330
The following BLAST results are available for this feature:
BLAST of NO11G02500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24921.12.400e-7755.42uncharacterized protein Naga_100092g2 [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02500NO11G02500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02500.1NO11G02500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02500.1.cds1NO11G02500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02500.1.cds2NO11G02500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02500.1 ID=NO11G02500.1|Name=NO11G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1642bp
ACACCGAGCGATGTGATGACGACGCCGCGACGAATGCGTGTCCCGTTTTT
AGCGCCCCATCTCGGGGGGCGGACTATCCTTATAGGGCTGTGCCTCCTTA
TGTTGGCTCATGAGATACCTTGCTTGGCGTTTTACGCAAGGCGCCTTACC
AATTAGATCGAAGTCCCAATTGTGACGCTGCACGTCGATCGTAATCCCTT
CTCTCACTCACTGCACCCATCTCGACCTGTAGCAGGAACTTTCGAAAGCA
TGCGGGCTTTTCAAGTCCCCCCACTACTCGCCCTTCCCCTCTCCCTGGCA
GTTTTCGTCGTTACCCTCCTCCCTAAAGCTAGCAATGCCTTCGCCTTTCC
CTCCACCATCCACGCGGTGCCCTTGCCTACCAGGCCGAGCTATATCATCT
CCCCGTCAGCTGCCACCGCAACAACGTCGACGAGCAGCACCTCCCGGCCA
ACCACCACAACCCTACACCCCGTTCTCCATGCCCTCCACCAAACCGCCTC
TCGCGCCGCTCCTCCCGGTTCCACCCGCCGGTCTATCATCAAAAAAGTGG
CTCGAGGCATGCTCGCCCTCGGCGGCGGAGTAGGCACGGCTGCTACTGCT
GCCAGTGCTGCAGGCGTTGCCGCCCCGGACAAGACCCCTGGAAAATACAA
GAATCTCGGCTCTGGTGGCACCAGCACTTTGGAGAGGGAGGATCAATTCA
ACGGCATCAGCAGCAGAAGCAGTGATTCGGCCGATGAAAATGTGAAGAAG
GAAGTACTGGACACGACCCGGAAGTGGCTGGAGACTGTGACGTCCAACAA
GCCTACCGCAGCAGTGGAAACGTCGGCCCTGTACGCGAAAGACGCTGTGT
TGTGGGGGACTGTCTCGGAGCAATTGAGAGTGACGCCAGGGGAAATTCGA
AGCTACTTTGATTTCTTTGCGGGTTTGCCGGGCTTGAGGGTGGCGGCATA
TCAGCCTTATGTCCGGGTGTGGGGGAGCGACACGGCGATCAACGATGGGT
ATTATGTGTTTGCATGGCAAGGGCCAGATGGAGTGGAGGTGCAGAAGCAT
GCGCGATTCTCGTTCGTTTATCGAAGGGAGGGGAGGAGGGAGGGCACATG
GAAGATTGTGGATCATCATTCGTCATTGTTGCCCACGGCGCCGGCGAAGC
TGGTGAAGGCCACGACGGTGTTATTGTAGATAGGTGTGAGCGGTAAGGGA
GGGAGGAGCGTTGATGGATAATCAGTTTTGGGATTAGAAAGAGGGGGAAA
TGAAGCGAAATTTGGTGTTTTTGAGTATTCGGTTAAGGTGTGTGCCTGTC
TGTGGAGTGGAGAGGGAGGAGGAGAGGGCATCTTTTCGAAAGGAGGACTA
GGATATGGAACTTTTTGGGTTCGATTGTACATTATCGATCATTTCTAAGA
TTGGTGCTTGATACGGTAAGAGGAGGGCGGACGCTGCTCGCTCGGTGCTT
CTGTGCGTAGTATTTTCACGCTTCCCCGTCGCCCAGCCATCACAGCCCTG
GCCTGCAGCCAAGATAGGGAGAGTCTGCGATATAAAGCGTGGGCATATGT
AGTATCATAGAACGAGCACCAACTTTGTGCGGATTCTCGTCACGAGCCTA
TGTATGAATACGTCGTAAAAAAGAATCACTCATGTGAGACAA
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protein sequence of NO11G02500.1

>NO11G02500.1-protein ID=NO11G02500.1-protein|Name=NO11G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MRAFQVPPLLALPLSLAVFVVTLLPKASNAFAFPSTIHAVPLPTRPSYII
SPSAATATTSTSSTSRPTTTTLHPVLHALHQTASRAAPPGSTRRSIIKKV
ARGMLALGGGVGTAATAASAAGVAAPDKTPGKYKNLGSGGTSTLEREDQF
NGISSRSSDSADENVKKEVLDTTRKWLETVTSNKPTAAVETSALYAKDAV
LWGTVSEQLRVTPGEIRSYFDFFAGLPGLRVAAYQPYVRVWGSDTAINDG
YYVFAWQGPDGVEVQKHARFSFVYRREGRREGTWKIVDHHSSLLPTAPAK
LVKATTVLL*
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mRNA from alignment at chr11:794705..796655+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02500.1 ID=NO11G02500.1|Name=NO11G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1951bp|location=Sequence derived from alignment at chr11:794705..796655+ (Nannochloropsis oceanica)
ACACCGAGCGATGTGATGACGACGCCGCGACGAATGCGTGTCCCGTTTTT
AGCGCCCCATCTCGGGGGGCGGACTATCCTTATAGGGCTGTGCCTCCTTA
TGTTGGCTCATGAGATACCTTGCTTGGCGTTTTACGCAAGGCGCCTTACC
AATTAGATCGAAGTCCCAATTGTGACGCTGCACGTCGATCGTAATCCCTT
CTCTCACTCACTGCACCCATCTCGACCTGTAGCAGGAACTTTCGAAAGCA
TGCGGGCTTTTCAAGTCCCCCCACTACTCGCCCTTCCCCTCTCCCTGGCA
GTTTTCGTCGTTACCCTCCTCCCTAAAGCTAGCAATGCCTTCGCCTTTCC
CTCCACCATCCACGCGGTGCCCTTGCCTACCAGGCCGAGGTGAGTGAAAA
GTCCTGAACGTCTCCTACGTCTTGAATATGTGCGCAAATATGCATTTCCC
ATGTCACCTATGGTGTGTCTGGCTCCATATTTGCTCCAAGGACCTCAGAC
GCATTGCAATTCTTCGGCGTCACCCTTCTCCTCCTGCCTCTTCCCTTTGG
CCTCCGGAGGCTCGGTTTCTGATTCGACCTCGACAATACCTCTTTGGAGA
AGAGACATCCCATTCAAAGCACCCTCGTAGTTTTCTCTTTTTCACACAAG
GTCTTACTCGTCTCCATACCCACCCGCCCCTCGCCTTCCATATGACAGCT
ATATCATCTCCCCGTCAGCTGCCACCGCAACAACGTCGACGAGCAGCACC
TCCCGGCCAACCACCACAACCCTACACCCCGTTCTCCATGCCCTCCACCA
AACCGCCTCTCGCGCCGCTCCTCCCGGTTCCACCCGCCGGTCTATCATCA
AAAAAGTGGCTCGAGGCATGCTCGCCCTCGGCGGCGGAGTAGGCACGGCT
GCTACTGCTGCCAGTGCTGCAGGCGTTGCCGCCCCGGACAAGACCCCTGG
AAAATACAAGAATCTCGGCTCTGGTGGCACCAGCACTTTGGAGAGGGAGG
ATCAATTCAACGGCATCAGCAGCAGAAGCAGTGATTCGGCCGATGAAAAT
GTGAAGAAGGAAGTACTGGACACGACCCGGAAGTGGCTGGAGACTGTGAC
GTCCAACAAGCCTACCGCAGCAGTGGAAACGTCGGCCCTGTACGCGAAAG
ACGCTGTGTTGTGGGGGACTGTCTCGGAGCAATTGAGAGTGACGCCAGGG
GAAATTCGAAGCTACTTTGATTTCTTTGCGGGTTTGCCGGGCTTGAGGGT
GGCGGCATATCAGCCTTATGTCCGGGTGTGGGGGAGCGACACGGCGATCA
ACGATGGGTATTATGTGTTTGCATGGCAAGGGCCAGATGGAGTGGAGGTG
CAGAAGCATGCGCGATTCTCGTTCGTTTATCGAAGGGAGGGGAGGAGGGA
GGGCACATGGAAGATTGTGGATCATCATTCGTCATTGTTGCCCACGGCGC
CGGCGAAGCTGGTGAAGGCCACGACGGTGTTATTGTAGATAGGTGTGAGC
GGTAAGGGAGGGAGGAGCGTTGATGGATAATCAGTTTTGGGATTAGAAAG
AGGGGGAAATGAAGCGAAATTTGGTGTTTTTGAGTATTCGGTTAAGGTGT
GTGCCTGTCTGTGGAGTGGAGAGGGAGGAGGAGAGGGCATCTTTTCGAAA
GGAGGACTAGGATATGGAACTTTTTGGGTTCGATTGTACATTATCGATCA
TTTCTAAGATTGGTGCTTGATACGGTAAGAGGAGGGCGGACGCTGCTCGC
TCGGTGCTTCTGTGCGTAGTATTTTCACGCTTCCCCGTCGCCCAGCCATC
ACAGCCCTGGCCTGCAGCCAAGATAGGGAGAGTCTGCGATATAAAGCGTG
GGCATATGTAGTATCATAGAACGAGCACCAACTTTGTGCGGATTCTCGTC
ACGAGCCTATGTATGAATACGTCGTAAAAAAGAATCACTCATGTGAGACA
A
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Coding sequence (CDS) from alignment at chr11:794705..796655+

>NO11G02500.1 ID=NO11G02500.1|Name=NO11G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr11:794705..796655+ (Nannochloropsis oceanica)
ATGCGGGCTTTTCAAGTCCCCCCACTACTCGCCCTTCCCCTCTCCCTGGC
AGTTTTCGTCGTTACCCTCCTCCCTAAAGCTAGCAATGCCTTCGCCTTTC
CCTCCACCATCCACGCGGTGCCCTTGCCTACCAGGCCGAGCTATATCATC
TCCCCGTCAGCTGCCACCGCAACAACGTCGACGAGCAGCACCTCCCGGCC
AACCACCACAACCCTACACCCCGTTCTCCATGCCCTCCACCAAACCGCCT
CTCGCGCCGCTCCTCCCGGTTCCACCCGCCGGTCTATCATCAAAAAAGTG
GCTCGAGGCATGCTCGCCCTCGGCGGCGGAGTAGGCACGGCTGCTACTGC
TGCCAGTGCTGCAGGCGTTGCCGCCCCGGACAAGACCCCTGGAAAATACA
AGAATCTCGGCTCTGGTGGCACCAGCACTTTGGAGAGGGAGGATCAATTC
AACGGCATCAGCAGCAGAAGCAGTGATTCGGCCGATGAAAATGTGAAGAA
GGAAGTACTGGACACGACCCGGAAGTGGCTGGAGACTGTGACGTCCAACA
AGCCTACCGCAGCAGTGGAAACGTCGGCCCTGTACGCGAAAGACGCTGTG
TTGTGGGGGACTGTCTCGGAGCAATTGAGAGTGACGCCAGGGGAAATTCG
AAGCTACTTTGATTTCTTTGCGGGTTTGCCGGGCTTGAGGGTGGCGGCAT
ATCAGCCTTATGTCCGGGTGTGGGGGAGCGACACGGCGATCAACGATGGG
TATTATGTGTTTGCATGGCAAGGGCCAGATGGAGTGGAGGTGCAGAAGCA
TGCGCGATTCTCGTTCGTTTATCGAAGGGAGGGGAGGAGGGAGGGCACAT
GGAAGATTGTGGATCATCATTCGTCATTGTTGCCCACGGCGCCGGCGAAG
CTGGTGAAGGCCACGACGGTGTTATTGTAG
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Synonyms
Publications