NO11G02490.1, NO11G02490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02490.1
Unique NameNO11G02490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1200
Alignment locationchr11:792114..794279 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:792114..794279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02490.1 vs.
Match: EWM24915.1 (hypothetical protein Naga_100092g3 [Nannochloropsis gaditana])

HSP 1 Score: 147.9 bits (372), Expect = 4.800e-32
Identity = 83/120 (69.17%), Postives = 91/120 (75.83%), Query Frame = 0 
Query:    1 MSDVKSLFRKKTKQAVKAKAEPVKLTVEEEEDDEWGVTSKPTEQLYMGDRKAAELIVGAYSDVNLATKIAHDDTKALLHEARKKAVSAVTT-PQHEAPVE---APKPVPAPAEQTGGRWR 117
            MSDVKSLFRKKTKQA KAK EPVK T EEEEDDEWGV  KPTEQLY+G+RKA ELI GAY+DVNLA K+AHDDTKA+ H+ RKKAVSA  +     APVE    P P PAP  Q G  +R
Sbjct:    1 MSDVKSLFRKKTKQAAKAKTEPVKPTAEEEEDDEWGVAPKPTEQLYLGNRKARELIGGAYADVNLAVKVAHDDTKAVFHDVRKKAVSAAASEASPAAPVEPSPPPAPEPAPTAQPGCVYR 120
The following BLAST results are available for this feature:
BLAST of NO11G02490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24915.14.800e-3269.17hypothetical protein Naga_100092g3 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02490NO11G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02490.1NO11G02490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02490.1.cds1NO11G02490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02490.1.cds2NO11G02490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02490.1.cds3NO11G02490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02490.1.cds4NO11G02490.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02490.1.cds5NO11G02490.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02490.1.cds6NO11G02490.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02490.1 ID=NO11G02490.1|Name=NO11G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
ACCACAGAAAGCAAGAAAGCAAGACCGCGAGCGCTTCTTCCTTGCTTCCC
CCTGTCTTGGCCCTACCCGAAGACAGGTGTACGGCTACGGCAGGAGCCAC
ACCCCTGCAATATTACCACATAATCAACATTTTTGGCGTCTCCGAGCAAG
CAATGTCCGACGTCAAGTCCCTGTTTCGCAAGAAGACCAAGCAAGCGGTC
AAGGCCAAGGCTGAGCCCGTTAAGCTGACGGTCGAAGAGGAGGAAGACGA
TGAGTGGGGGGTGACCTCCAAGCCCACAGAGCAGCTGTACATGGGAGATC
GCAAGGCCGCGGAATTAATCGTCGGCGCCTACTCGGACGTCAATCTGGCC
ACCAAGATCGCGCATGACGACACCAAGGCACTCCTCCACGAAGCCAGAAA
AAAGGCCGTGTCTGCCGTCACCACTCCTCAGCATGAGGCCCCCGTCGAAG
CCCCCAAGCCCGTCCCCGCACCCGCCGAGCAAACCGGGGGCCGCTGGCGC
TCCCGACGTGTCATGGTTGAGCAAGGCCTCGCCCCTCCTCTCCCTGGCGG
CAGCGGCAGCAGCAGCAACGGAGGCAAGATTGAAGAATTTCCTGCCCTCG
GCGGCTTCCCTTCCCTCGGAGGCACTGCCGGTACCGCGGCTGCTGGCACG
GTGCCTACCAAAGCTGTGGCAGCGACGGGCACATGGGGTCGCGTCGGAGG
GGAGGAGGAGGCAGCACATGTCACAGTTGTATCAGACGTCGTGGAGACGC
AGGAGAAGAAGGAACCGACGCCCACAGCTGCAGCTACCCCACCAGCGACG
GAGAAGGAGGATAAATGCGCGCCCCCTGCTGCACCGGTAGTGAGAGAGGC
GGAAGCTGTGGCACCAGCAGGGCCACTTGCAACAGCGAAAGCGACAACAA
AAGGGGACGCAGATGTTGAGGCGCTGGCGGAGGGCGTGGCGGTGGTGGAC
CTGAAGGGTAAATTTGGCACCAAGAAAAAGAAGAAGAAGGCGATTGATAT
GGATGCGTGAGGAGAAGAGGGGTATAAAGAAGGGAAGGGGCGAGGGATGG
ATCTTTCCAATTGGCTGTCAAAAGAGCGGGGAAGGGTGGGAAGAGGGGAA
CAATGTCGTTTTCAAAGTTAGAAGAAATACAAGGCAGGCTAAGATGCTGG
CCAAAAAGGAAAAAAGAGCGAAACGCCGCTTGGAACTCGTCATGAGTTTA
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protein sequence of NO11G02490.1

>NO11G02490.1-protein ID=NO11G02490.1-protein|Name=NO11G02490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MSDVKSLFRKKTKQAVKAKAEPVKLTVEEEEDDEWGVTSKPTEQLYMGDR
KAAELIVGAYSDVNLATKIAHDDTKALLHEARKKAVSAVTTPQHEAPVEA
PKPVPAPAEQTGGRWRSRRVMVEQGLAPPLPGGSGSSSNGGKIEEFPALG
GFPSLGGTAGTAAAGTVPTKAVAATGTWGRVGGEEEAAHVTVVSDVVETQ
EKKEPTPTAAATPPATEKEDKCAPPAAPVVREAEAVAPAGPLATAKATTK
GDADVEALAEGVAVVDLKGKFGTKKKKKKAIDMDA*
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mRNA from alignment at chr11:792114..794279+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02490.1 ID=NO11G02490.1|Name=NO11G02490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp|location=Sequence derived from alignment at chr11:792114..794279+ (Nannochloropsis oceanica)
ACCACAGAAAGCAAGAAAGCAAGACCGCGAGCGCTTCTTCCTTGCTTCCC
CCTGTCTTGGCCCTACCCGAAGACAGGTGTACGGCTACGGCAGGAGCCAC
ACCCCTGCAATATTACCACATAATCAACATTTTTGGCGTCTCCGAGCAAG
CAATGTCCGACGTCAAGTCCCTGTTTCGCAAGAAGACCAAGCAAGCGGTA
CGTATGTACCCTGTACTAGGGGGCCGTGGAGTGCCGGGGCGGGGAGTCTA
CTCTGAGAGAGCAAGGCCAGCACATCCCCGTCTTTCTCCATGTATCTGGC
CGATGCGCTTCTCACGACCACTCTCAAGCCCTTTACCGCCTTCCCATCCT
CCCTATGTATACAGGTCAAGGCCAAGGCTGAGCCCGTTAAGCTGTAAGTA
CATCTCCTTCTCTCCGCTTGCTCCCCTTTCTCGCCTTTCTTTTTCCAACT
TTGTTTGCTCGCCCTTGTTGCCTCTGTTTCCTCCCATCCATATAGATCTC
TTCCACTAACGCGCATATCTACTCTTCTCACAGGACGGTCGAAGAGGAGG
AAGACGATGAGTGGGGGGTGACCTCCAAGCCCACAGAGCAGCTGTACATG
GGAGATCGCAAGGCCGCGGAATTAATGTACGTAAAGGCAGTGATTTGTTT
GACGTCATACAAGTAAAGACGGGTATAAAGATTGATTAAGTGCACAGGTG
GTACTCCCGCAAATCGTCCCAGTCGTCCATCCATTGAACTGTCTGTAGTC
TTCCTTTCTTTCGTGTCCATCTTTATTATATGTCTCTCTTCCCGTCTTTT
CCGTAACCCCTTTTGGTAAGGTACCATTGTGACAGGTCGCTCATTCCCTC
CTGCTCTCATGGCGCATCTAACCTCCGACCTTGCCTCCCTCCCTCTATTC
CTCGACAGCGTCGGCGCCTACTCGGACGTCAATCTGGCCACCAAGATCGC
GCATGACGACACCAAGTAAGTAACTGACGGGAAGCAAGGGCGGGAATAAA
ATTGTCACTGCATACCCAAGCCGCTTAGCTTTTCCCGGTGTTGGGGTTTC
CTTCCTACTCCTTCCACCTTTCTCCCTTCGCAGTAGCCCCGTTGCTCCTC
CTCACACCCTTGGCCCTCTTTCTCCCAAACCGCTCAAATCATTTCTTGAA
CTCAATAGGGCACTCCTCCACGAAGCCAGAAAAAAGGCCGTGTCTGCCGT
CACCACTCCTCAGCATGAGGCCCCCGTCGAAGCCCCCAAGCCCGTCCCCG
CACCCGCCGAGCAAACCGGGTATGTTTGTTTAGTGTTGAGCTTGTTGGTT
TCCGTCCCACTCGCCATTTTTTTCCTCTAAGCACGATCTTTCTATTGTTA
TATAAAGGGGTCATCATAACTCATCCTCTTCTCTCCTCATCTCTCCCGTC
TTCTCCTATATCCCTATCTCCCTCCCTCCCTCCACCTTTCTCCTCAAACA
TAGGGGCCGCTGGCGCTCCCGACGTGTCATGGTTGAGCAAGGCCTCGCCC
CTCCTCTCCCTGGCGGCAGCGGCAGCAGCAGCAACGGAGGCAAGATTGAA
GAATTTCCTGCCCTCGGCGGCTTCCCTTCCCTCGGAGGCACTGCCGGTAC
CGCGGCTGCTGGCACGGTGCCTACCAAAGCTGTGGCAGCGACGGGCACAT
GGGGTCGCGTCGGAGGGGAGGAGGAGGCAGCACATGTCACAGTTGTATCA
GACGTCGTGGAGACGCAGGAGAAGAAGGAACCGACGCCCACAGCTGCAGC
TACCCCACCAGCGACGGAGAAGGAGGATAAATGCGCGCCCCCTGCTGCAC
CGGTAGTGAGAGAGGCGGAAGCTGTGGCACCAGCAGGGCCACTTGCAACA
GCGAAAGCGACAACAAAAGGGGACGCAGATGTTGAGGCGCTGGCGGAGGG
CGTGGCGGTGGTGGACCTGAAGGGTAAATTTGGCACCAAGAAAAAGAAGA
AGAAGGCGATTGATATGGATGCGTGAGGAGAAGAGGGGTATAAAGAAGGG
AAGGGGCGAGGGATGGATCTTTCCAATTGGCTGTCAAAAGAGCGGGGAAG
GGTGGGAAGAGGGGAACAATGTCGTTTTCAAAGTTAGAAGAAATACAAGG
CAGGCTAAGATGCTGGCCAAAAAGGAAAAAAGAGCGAAACGCCGCTTGGA
ACTCGTCATGAGTTTA
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Coding sequence (CDS) from alignment at chr11:792114..794279+

>NO11G02490.1 ID=NO11G02490.1|Name=NO11G02490.1|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at chr11:792114..794279+ (Nannochloropsis oceanica)
ATGTCCGACGTCAAGTCCCTGTTTCGCAAGAAGACCAAGCAAGCGGTCAA
GGCCAAGGCTGAGCCCGTTAAGCTGACGGTCGAAGAGGAGGAAGACGATG
AGTGGGGGGTGACCTCCAAGCCCACAGAGCAGCTGTACATGGGAGATCGC
AAGGCCGCGGAATTAATCGTCGGCGCCTACTCGGACGTCAATCTGGCCAC
CAAGATCGCGCATGACGACACCAAGGCACTCCTCCACGAAGCCAGAAAAA
AGGCCGTGTCTGCCGTCACCACTCCTCAGCATGAGGCCCCCGTCGAAGCC
CCCAAGCCCGTCCCCGCACCCGCCGAGCAAACCGGGGGCCGCTGGCGCTC
CCGACGTGTCATGGTTGAGCAAGGCCTCGCCCCTCCTCTCCCTGGCGGCA
GCGGCAGCAGCAGCAACGGAGGCAAGATTGAAGAATTTCCTGCCCTCGGC
GGCTTCCCTTCCCTCGGAGGCACTGCCGGTACCGCGGCTGCTGGCACGGT
GCCTACCAAAGCTGTGGCAGCGACGGGCACATGGGGTCGCGTCGGAGGGG
AGGAGGAGGCAGCACATGTCACAGTTGTATCAGACGTCGTGGAGACGCAG
GAGAAGAAGGAACCGACGCCCACAGCTGCAGCTACCCCACCAGCGACGGA
GAAGGAGGATAAATGCGCGCCCCCTGCTGCACCGGTAGTGAGAGAGGCGG
AAGCTGTGGCACCAGCAGGGCCACTTGCAACAGCGAAAGCGACAACAAAA
GGGGACGCAGATGTTGAGGCGCTGGCGGAGGGCGTGGCGGTGGTGGACCT
GAAGGGTAAATTTGGCACCAAGAAAAAGAAGAAGAAGGCGATTGATATGG
ATGCGTGA
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Synonyms
Publications