|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:788456..791865 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02480.1 vs.
Match: AQX92134.1 (delta-12 fatty acid desaturase [Nannochloropsis oceanica]) HSP 1 Score: 913.3 bits (2359), Expect = 3.100e-262 Identity = 438/438 (100.00%), Postives = 438/438 (100.00%), Query Frame = 0
Query: 37 MGRGGEKTVTPLRKKTLLDAASTISGTVRPSKAVEALPTEELRKKAAQYGINTSVDRETLLRELAPYGDILLRNDAPKSLPLAPPPFTLSDIKNAVPRHCFERSLSTSLFHLTIDLIQVAVLGYLASLLGHSDVPPMSRYILWPLYWYAQGSVLTGVWVIAHECGHQSFSPYESVNNFFGWLLHSALLVPYHSWRISHGKHHNNTGSCENDEVFAPPIKEELMDEILLHSPLANLVQIIIMLTIGWMPGYLLLNATGPRKYKGLSNSHFNPNSALFSPKDRLDIIWSDIGFFVALACVVYACVQFGFQTVGKYYLLPYMVVNYHLVLITYLQHTDVFIPHFRGSEWTWFRGALCTVDRSFGWLLDHTFHHISDTHVCHHIFSKMPFYHAQEASEHIRKALGDYYLKDDTPIWKALWRSYTLCKYVDSEETTVFYKQRA 475
MGRGGEKTVTPLRKKTLLDAASTISGTVRPSKAVEALPTEELRKKAAQYGINTSVDRETLLRELAPYGDILLRNDAPKSLPLAPPPFTLSDIKNAVPRHCFERSLSTSLFHLTIDLIQVAVLGYLASLLGHSDVPPMSRYILWPLYWYAQGSVLTGVWVIAHECGHQSFSPYESVNNFFGWLLHSALLVPYHSWRISHGKHHNNTGSCENDEVFAPPIKEELMDEILLHSPLANLVQIIIMLTIGWMPGYLLLNATGPRKYKGLSNSHFNPNSALFSPKDRLDIIWSDIGFFVALACVVYACVQFGFQTVGKYYLLPYMVVNYHLVLITYLQHTDVFIPHFRGSEWTWFRGALCTVDRSFGWLLDHTFHHISDTHVCHHIFSKMPFYHAQEASEHIRKALGDYYLKDDTPIWKALWRSYTLCKYVDSEETTVFYKQRA
Sbjct: 1 MGRGGEKTVTPLRKKTLLDAASTISGTVRPSKAVEALPTEELRKKAAQYGINTSVDRETLLRELAPYGDILLRNDAPKSLPLAPPPFTLSDIKNAVPRHCFERSLSTSLFHLTIDLIQVAVLGYLASLLGHSDVPPMSRYILWPLYWYAQGSVLTGVWVIAHECGHQSFSPYESVNNFFGWLLHSALLVPYHSWRISHGKHHNNTGSCENDEVFAPPIKEELMDEILLHSPLANLVQIIIMLTIGWMPGYLLLNATGPRKYKGLSNSHFNPNSALFSPKDRLDIIWSDIGFFVALACVVYACVQFGFQTVGKYYLLPYMVVNYHLVLITYLQHTDVFIPHFRGSEWTWFRGALCTVDRSFGWLLDHTFHHISDTHVCHHIFSKMPFYHAQEASEHIRKALGDYYLKDDTPIWKALWRSYTLCKYVDSEETTVFYKQRA 438
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02480.1 ID=NO11G02480.1|Name=NO11G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=3151bp CCTTGCCGTCTCGTGTTGCTGGCTTCGCCCGACGTGCGGAAAGATTACAC GCTCCGCTCTTTCAAGTACAGATACACGTTACATGATTGACAGGAGCCAG TGTGGATGAAGAAGAGCCAGAGTTATTCCCCCCTGGATGGGTATTTGGAT AGATGGATCATCCATCAGTGCCATCAGCTCTCTCACTCACCTCCACTCTC ACACGCCACGTACCCGTGCTTGGTTGCTATATAGATTGCTAGGTTGCACA CGGCACCGGTGCCTGGGCTGGTATACTTGCTCGATCCGCTGGTGCCCGCG GCCTCCTCAATGCCCCCTCCAAAAAGCTGGCATTCGTTAGCACACAGATC TTCCGGCACCATGTGAACAAATGATGCTTATGGAATGAAAAGCAATTTGT CGTTTCTGAATGCGAAAGCCAACCAATAGGTGCTTAGGTGCTCGCGTCGA TCGTGTAAATGATGTGGCGCATGATGGAGCATGACACGCTTTCATCGCAT CGCAAAATATCATTTTTGTCCAGGACTTGTGTCATACATAAAAGAGCTTG AATCGACGATCGGAAAAAGCGACAGCTGGCGGTGCCAGCAAGGCAACTGG CGTGTGATGATGCGCCTGCCGTTGGAAAGGGAAAGGCGAAGCGCAGCCGT CCAATCCATGTCCAATAGACACGACCACAGTGGAAAGCCTCTCTCTTAGA CCGTCACAATACTTTTGGCCAAGGCTTCGGCAGTTCAACTGCCAAGCAGG CAAAAGTCAAGGGCAACCACATGATGCTGGGAGGAATGTTAGCAGGAACC CGGAGCTTGTGTCGTTGTTCTTCCTCGTCAGCCGGGATTGCTCGCCAGCG CGACCACACCAGCCCCCCACTTCTTCTTGTTGTGACTTGCGCAAGCATTT AACCTCTTATCGCGCACTGTAATTTGCCGGCCACGCCTGTGGCGTTCACA ACCCCATCCTGCTGCTGACGGGGATTTGATGCCTACCAGGGTCTGAACGC CCGCTTATTAGAGAAGCCACGTAAGCATACCATCACAGATCGCCTTCTTG CCGCGGCATGTCCCAATCAAATGAAGTCAGATGGATTGGTTCCTCATGCC CACCGACAGCTCAGCCTCTCATACGCCCTCTACACTCCTCACATCACAGA CTCCCTTCCCACCCATCCGAGCCAAACCATGGGACGCGGCGGTGAGAAGA CGGTGACCCCTCTTCGCAAAAAAACCCTCCTGGATGCCGCTTCCACGATC AGCGGCACAGTCAGACCAAGCAAGGCAGTAGAGGCCCTGCCCACGGAGGA GCTGCGTAAGAAGGCCGCACAATACGGTATCAACACTTCGGTCGACCGCG AAACACTGCTGAGGGAGCTGGCTCCCTACGGCGATATCCTCCTCCGCAAT GACGCCCCTAAATCCCTGCCCCTTGCCCCTCCTCCTTTCACCCTCTCCGA CATCAAGAACGCTGTTCCCCGTCACTGCTTTGAGCGTTCCCTCTCCACCT CCCTCTTCCACTTGACCATCGACTTGATCCAAGTCGCTGTCCTCGGGTAC CTTGCCTCATTACTGGGCCACTCCGACGTCCCGCCCATGTCTCGTTATAT TCTATGGCCGTTGTACTGGTACGCGCAAGGCTCTGTGCTGACGGGAGTGT GGGTCATTGCCCACGAGTGCGGGCACCAATCGTTTTCGCCTTACGAGAGC GTGAACAACTTCTTTGGGTGGCTCTTGCACTCGGCCTTGCTTGTGCCCTA TCACTCTTGGAGGATTTCCCATGGAAAGCACCACAACAACACGGGGAGCT GCGAGAATGACGAGGTCTTTGCGCCGCCTATTAAGGAGGAACTGATGGAC GAGATTTTGCTTCACTCCCCTTTGGCGAATCTGGTGCAGATAATCATAAT GTTGACCATCGGATGGATGCCGGGGTACCTGCTCCTGAACGCTACGGGGC CTAGGAAATACAAGGGACTGAGCAATAGCCACTTTAACCCAAATTCGGCG TTGTTTTCTCCGAAGGACCGTCTGGACATTATTTGGTCCGACATTGGGTT TTTCGTGGCCTTGGCCTGCGTGGTATATGCCTGTGTGCAGTTTGGATTTC AAACGGTGGGAAAGTATTACCTGCTGCCGTACATGGTGGTCAATTATCAC CTGGTCCTCATCACGTACCTGCAGCACACGGACGTCTTCATCCCCCACTT TCGGGGGAGCGAGTGGACGTGGTTTAGGGGCGCCCTTTGCACGGTCGACC GATCCTTCGGCTGGCTTTTGGACCATACGTTTCACCATATCAGTGACACT CATGTGTGCCACCACATCTTCAGCAAGATGCCGTTCTACCACGCGCAGGA GGCGAGTGAGCACATTCGCAAGGCGTTGGGCGACTATTATTTGAAGGATG ATACCCCGATTTGGAAGGCATTGTGGCGAAGTTATACCCTGTGCAAGTAC GTGGACTCGGAGGAGACGACGGTATTCTACAAGCAGCGGGCATAGGGACC GGGGAATGGGTGAAGAGCGAGGCAGGTCAGTTTTTTATTGATGAGGATGA CAGTGACGCGACTGTTATGTGGATGTGTGGTTGAGCGTGTTGACGCGACG AAGGAAGGGGACGAGCGTGTAGTTTTATTTTCATGTATGCAGAGCCGGAG AAAGGAGTGAAGAGGTGGAGGAGAGGTAGACTTGAACAGATGAGGTGATG AGGCGGCATGTTACATTCGAGTCTGCTTTGCGCGTGTGAGTGCCTGTGTT GGTGTTTGTTGGCATTGGCGTGGATTTTGGTGTCGTCGACCTCCTCAATC TTTGACTATTTCTCGCGCACAACTGGACGATGAGGGCTGAGGCGAGTGTT GCGGATTGAGGGAGAGAGCAATAGCACAAATAAAATACCCTTTTGAACGG TAGCTACTGACATGAGGAGAAGGAGAGAAGAAAAAAATCATCCACAACAA GAGAGGATACCCTTTTTAATAGCATGAGTGCTTGTAGTAGAAGTAGATAA TAATAGAAAAAGGATCGATCGAAGAAGAGCGGAAGAGCGCGTCTTCCACT CGTCCCTTTTTTGGGGGGTGAGGGGAGGTTTATTACGCCAGCACAACAAC AAGTCAACCAGAGGGAAAGGAATAAAAACAAGAAATTTACATACTTGACG A back to topprotein sequence of NO11G02480.1 >NO11G02480.1-protein ID=NO11G02480.1-protein|Name=NO11G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=475bp MKSDGLVPHAHRQLSLSYALYTPHITDSLPTHPSQTMGRGGEKTVTPLRK KTLLDAASTISGTVRPSKAVEALPTEELRKKAAQYGINTSVDRETLLREL APYGDILLRNDAPKSLPLAPPPFTLSDIKNAVPRHCFERSLSTSLFHLTI DLIQVAVLGYLASLLGHSDVPPMSRYILWPLYWYAQGSVLTGVWVIAHEC GHQSFSPYESVNNFFGWLLHSALLVPYHSWRISHGKHHNNTGSCENDEVF APPIKEELMDEILLHSPLANLVQIIIMLTIGWMPGYLLLNATGPRKYKGL SNSHFNPNSALFSPKDRLDIIWSDIGFFVALACVVYACVQFGFQTVGKYY LLPYMVVNYHLVLITYLQHTDVFIPHFRGSEWTWFRGALCTVDRSFGWLL DHTFHHISDTHVCHHIFSKMPFYHAQEASEHIRKALGDYYLKDDTPIWKA LWRSYTLCKYVDSEETTVFYKQRA* back to topmRNA from alignment at chr11:788456..791865+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02480.1 ID=NO11G02480.1|Name=NO11G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=3410bp|location=Sequence derived from alignment at chr11:788456..791865+ (Nannochloropsis oceanica) CCTTGCCGTCTCGTGTTGCTGGCTTCGCCCGACGTGCGGAAAGATTACAC
GCTCCGCTCTTTCAAGTACAGATACACGTTACATGATTGACAGGAGCCAG
TGTGGATGAAGAAGAGCCAGAGTTATTCCCCCCTGGATGGGTATTTGGAT
AGATGGATCATCCATCAGTGCCATCAGCTCTCTCACTCACCTCCACTCTC
ACACGCCACGTACCCGTGCTTGGTTGCTATATAGATTGCTAGGTTGCACA
CGGCACCGGTGCCTGGGCTGGTATACTTGCTCGATCCGCTGGTGCCCGCG
GCCTCCTCAATGCCCCCTCCAAAAAGCTGGCATTCGTTAGCACACAGATC
TTCCGGCACCATGTGAACAAATGATGCTTATGGAATGAAAAGCAATTTGT
CGTTTCTGAATGCGAAAGCCAACCAATAGGTGCTTAGGTGCTCGCGTCGA
TCGTGTAAATGATGTGGCGCATGATGGAGCATGACACGCTTTCATCGCAT
CGCAAAATATCATTTTTGTCCAGGACTTGTGTCATACATAAAAGAGCTTG
AATCGACGATCGGAAAAAGCGACAGCTGGCGGTGCCAGCAAGGCAACTGG
CGTGTGATGATGCGCCTGCCGTTGGAAAGGGAAAGGCGAAGCGCAGCCGT
CCAATCCATGTCCAATAGACACGACCACAGTGGAAAGCCTCTCTCTTAGA
CCGTCACAATACTTTTGGCCAAGGCTTCGGCAGTTCAACTGCCAAGCAGG
CAAAAGTCAAGGGCAACCACATGATGCTGGGAGGAATGTTAGCAGGAACC
CGGAGCTTGTGTCGTTGTTCTTCCTCGTCAGCCGGGATTGCTCGCCAGCG
CGACCACACCAGCCCCCCACTTCTTCTTGTTGTGACTTGCGCAAGCATTT
AACCTCTTATCGCGCACTGTAATTTGCCGGCCACGCCTGTGGCGTTCACA
ACCCCATCCTGCTGCTGACGGGGATTTGATGCCTACCAGGGTCTGAACGC
CCGCTTATTAGAGAAGCCACGTAAGCATACCATCACAGATCGCCTTCTTG
CCGCGGCATGTCCCAATCAAATGAAGTCAGATGGATTGGTTCCTCATGCC
CACCGACAGCTCAGCCTCTCATACGCCCTCTACACTCCTCACATCACAGA
CTCCCTTCCCACCCATCCGAGCCAAACCATGGGACGCGGCGGTGAGAAGA
CGGTGACCCCTCTTCGCAAAAAAACCCTCCTGGATGCCGCTTCCACGATC
AGCGGCACAGTCAGACCAAGCAAGGCAGTAGAGGCCCTGCCCACGGAGGA
GCTGCGTAAGAAGGCCGCACAATACGGTATCAACACTTCGGTCGACCGCG
AAACACTGCTGAGGGAGCTGGTAAGTGCTTGTGATCGCTTGAGGGGTGGA
TGGGTAAAAACAGTTCCCTCCCATTCGTGCATGTGGTCAGACGGATATAA
GAATTACGTGCCATGCCCTTGACATTTTGATGTCACCGCGCTGTCTTCAC
TTCCCGCTCCAATAGCTATTATGTACGTGGACTGGCGGCTGCTGCCCCTT
GTCCTTTTTTCTTCCCTCCCTTGCATGCCACCTAAGCATACCTCGCTCAT
TCACTTTCCGCATGTCATCATAACCACAGGCTCCCTACGGCGATATCCTC
CTCCGCAATGACGCCCCTAAATCCCTGCCCCTTGCCCCTCCTCCTTTCAC
CCTCTCCGACATCAAGAACGCTGTTCCCCGTCACTGCTTTGAGCGTTCCC
TCTCCACCTCCCTCTTCCACTTGACCATCGACTTGATCCAAGTCGCTGTC
CTCGGGTACCTTGCCTCATTACTGGGCCACTCCGACGTCCCGCCCATGTC
TCGTTATATTCTATGGCCGTTGTACTGGTACGCGCAAGGCTCTGTGCTGA
CGGGAGTGTGGGTCATTGCCCACGAGTGCGGGCACCAATCGTTTTCGCCT
TACGAGAGCGTGAACAACTTCTTTGGGTGGCTCTTGCACTCGGCCTTGCT
TGTGCCCTATCACTCTTGGAGGATTTCCCATGGAAAGCACCACAACAACA
CGGGGAGCTGCGAGAATGACGAGGTCTTTGCGCCGCCTATTAAGGAGGAA
CTGATGGACGAGATTTTGCTTCACTCCCCTTTGGCGAATCTGGTGCAGAT
AATCATAATGTTGACCATCGGATGGATGCCGGGGTACCTGCTCCTGAACG
CTACGGGGCCTAGGAAATACAAGGGACTGAGCAATAGCCACTTTAACCCA
AATTCGGCGTTGTTTTCTCCGAAGGACCGTCTGGACATTATTTGGTCCGA
CATTGGGTTTTTCGTGGCCTTGGCCTGCGTGGTATATGCCTGTGTGCAGT
TTGGATTTCAAACGGTGGGAAAGTATTACCTGCTGCCGTACATGGTGGTC
AATTATCACCTGGTCCTCATCACGTACCTGCAGCACACGGACGTCTTCAT
CCCCCACTTTCGGGGGAGCGAGTGGACGTGGTTTAGGGGCGCCCTTTGCA
CGGTCGACCGATCCTTCGGCTGGCTTTTGGACCATACGTTTCACCATATC
AGTGACACTCATGTGTGCCACCACATCTTCAGCAAGATGCCGTTCTACCA
CGCGCAGGAGGCGAGTGAGCACATTCGCAAGGCGTTGGGCGACTATTATT
TGAAGGATGATACCCCGATTTGGAAGGCATTGTGGCGAAGTTATACCCTG
TGCAAGTACGTGGACTCGGAGGAGACGACGGTATTCTACAAGCAGCGGGC
ATAGGGACCGGGGAATGGGTGAAGAGCGAGGCAGGTCAGTTTTTTATTGA
TGAGGATGACAGTGACGCGACTGTTATGTGGATGTGTGGTTGAGCGTGTT
GACGCGACGAAGGAAGGGGACGAGCGTGTAGTTTTATTTTCATGTATGCA
GAGCCGGAGAAAGGAGTGAAGAGGTGGAGGAGAGGTAGACTTGAACAGAT
GAGGTGATGAGGCGGCATGTTACATTCGAGTCTGCTTTGCGCGTGTGAGT
GCCTGTGTTGGTGTTTGTTGGCATTGGCGTGGATTTTGGTGTCGTCGACC
TCCTCAATCTTTGACTATTTCTCGCGCACAACTGGACGATGAGGGCTGAG
GCGAGTGTTGCGGATTGAGGGAGAGAGCAATAGCACAAATAAAATACCCT
TTTGAACGGTAGCTACTGACATGAGGAGAAGGAGAGAAGAAAAAAATCAT
CCACAACAAGAGAGGATACCCTTTTTAATAGCATGAGTGCTTGTAGTAGA
AGTAGATAATAATAGAAAAAGGATCGATCGAAGAAGAGCGGAAGAGCGCG
TCTTCCACTCGTCCCTTTTTTGGGGGGTGAGGGGAGGTTTATTACGCCAG
CACAACAACAAGTCAACCAGAGGGAAAGGAATAAAAACAAGAAATTTACA
TACTTGACGA back to topCoding sequence (CDS) from alignment at chr11:788456..791865+ >NO11G02480.1 ID=NO11G02480.1|Name=NO11G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=1425bp|location=Sequence derived from alignment at chr11:788456..791865+ (Nannochloropsis oceanica) ATGAAGTCAGATGGATTGGTTCCTCATGCCCACCGACAGCTCAGCCTCTC ATACGCCCTCTACACTCCTCACATCACAGACTCCCTTCCCACCCATCCGA GCCAAACCATGGGACGCGGCGGTGAGAAGACGGTGACCCCTCTTCGCAAA AAAACCCTCCTGGATGCCGCTTCCACGATCAGCGGCACAGTCAGACCAAG CAAGGCAGTAGAGGCCCTGCCCACGGAGGAGCTGCGTAAGAAGGCCGCAC AATACGGTATCAACACTTCGGTCGACCGCGAAACACTGCTGAGGGAGCTG GCTCCCTACGGCGATATCCTCCTCCGCAATGACGCCCCTAAATCCCTGCC CCTTGCCCCTCCTCCTTTCACCCTCTCCGACATCAAGAACGCTGTTCCCC GTCACTGCTTTGAGCGTTCCCTCTCCACCTCCCTCTTCCACTTGACCATC GACTTGATCCAAGTCGCTGTCCTCGGGTACCTTGCCTCATTACTGGGCCA CTCCGACGTCCCGCCCATGTCTCGTTATATTCTATGGCCGTTGTACTGGT ACGCGCAAGGCTCTGTGCTGACGGGAGTGTGGGTCATTGCCCACGAGTGC GGGCACCAATCGTTTTCGCCTTACGAGAGCGTGAACAACTTCTTTGGGTG GCTCTTGCACTCGGCCTTGCTTGTGCCCTATCACTCTTGGAGGATTTCCC ATGGAAAGCACCACAACAACACGGGGAGCTGCGAGAATGACGAGGTCTTT GCGCCGCCTATTAAGGAGGAACTGATGGACGAGATTTTGCTTCACTCCCC TTTGGCGAATCTGGTGCAGATAATCATAATGTTGACCATCGGATGGATGC CGGGGTACCTGCTCCTGAACGCTACGGGGCCTAGGAAATACAAGGGACTG AGCAATAGCCACTTTAACCCAAATTCGGCGTTGTTTTCTCCGAAGGACCG TCTGGACATTATTTGGTCCGACATTGGGTTTTTCGTGGCCTTGGCCTGCG TGGTATATGCCTGTGTGCAGTTTGGATTTCAAACGGTGGGAAAGTATTAC CTGCTGCCGTACATGGTGGTCAATTATCACCTGGTCCTCATCACGTACCT GCAGCACACGGACGTCTTCATCCCCCACTTTCGGGGGAGCGAGTGGACGT GGTTTAGGGGCGCCCTTTGCACGGTCGACCGATCCTTCGGCTGGCTTTTG GACCATACGTTTCACCATATCAGTGACACTCATGTGTGCCACCACATCTT CAGCAAGATGCCGTTCTACCACGCGCAGGAGGCGAGTGAGCACATTCGCA AGGCGTTGGGCGACTATTATTTGAAGGATGATACCCCGATTTGGAAGGCA TTGTGGCGAAGTTATACCCTGTGCAAGTACGTGGACTCGGAGGAGACGAC GGTATTCTACAAGCAGCGGGCATAG back to top
|