NO11G02340.1, NO11G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02340.1
Unique NameNO11G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2338
Alignment locationchr11:747333..749831 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:747333..749831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02340NO11G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02340.1NO11G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02340.1.cds1NO11G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02340.1.cds2NO11G02340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02340.1 ID=NO11G02340.1|Name=NO11G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2338bp
CTCGATTACTCGGATGACCTCCGGCGGCGTTCCCTTCAAATCGCCTCAGC
ATTTTCTCCTGGCTTTCAAACCCCCACACCAATATCCAACCCCTTACGTT
CGACAGCACCTTCTTCACCTTTAATACCATATTTCAAGACCATGGCATCG
GACGCCGGAGGCTGGTATTCCTTCTTGCTGGGCGACGACGTAGTGAATAC
CCCCCCACAGCACGACGACAGCAAAGCCCTCCTTCTGCCTCGCGTGAATT
ACGCCAATAACGCAGAGGACAGCCTTGAGCCTATAAGCGACTGGCTTACG
GGGCAGTCTGCACAATCCTCGCCGATGACCTTGACGCCGCCTGCATTCCG
GTCATCATCACCCTCCCTCCTCATCACGTCCCCCCTCCCCATCACCTCAA
CTACCACGGCATCTGCCACCGCCTTCTTTCTGAGCCCTCCTCGCTTCACG
ATGTGTCTTTCACCGCTTCAACTATCATCAGCTACCTCCTCTCCTTGGGC
CTCGTTCCTTTGTATCTGCAGGAGCAGCAGCCAGAACAAGGAGGAACAGA
GCAGCCCCGGCAACTACACCCTCCCCAGTCTTCTCTCACCTCCTCGCGAC
GGCCGTGCCACGATATTGTTGCGACCTCCACCAACACAACAGAAGCAAGG
ATCGATGTGGTGTGGCCAGAACGACGAAGACGAGGAGGAGGAGGACGAGG
AAGGGGAAGGGGAGGAGAAGGTGGGAGAGGAGGAGAATAGTGGTGGGGTG
CGGATGCGCAAGAGTACGAGGGCCCGCAAAGCCACTGTGAAGAAAACAGC
ATTAGCAAAGCGACTGTTCGATGGAGAATATGTCGAGGACGAGGATAAGA
GCGATGGAAGGGAATGGGAGGGAGGGAGGGAGGGAGGGGCGGTGATGTTA
CTATCCTCCTCCTCTCCTTCTTCCTCCTTCTCCTCTGCCTCTTCCTCGTT
TGCCTTCCACAGCAGCCAGCCGAGAACGATTTCCGCCGTCACCACCCATC
GTTCCCTCAGCAACAACAGCACCACAAGAAATGGTATTCTTCCTATCTCC
TCTGCAACCAAAGCCTTGTGCTTCGGTTCGGCGTCCCTCCCTGCTGCTAA
GAGCATTCTACTCGACAAAGTCCTGCGTGGGTGTATCACCAACTTCATCG
TGGGCCCTCGCCCTCCCCGCAAATGGATGGAGAGGGTGGCCACCCGGATA
GGGGTAACGTTGAAACAAGTGGACAGCAAATGCAGCAATATCCGGCAACG
CAGCCTGGACCGCCGCGGCCGCCCCCTCCCCCTCGCGCGTGATACCTCCT
CCCTCGTCGATGAGGCCATGGCGGCAGCATTGGTGGCCGAAATGAGAGCC
GAGCTCCGGGGCCTTACCGAGCAGGAGACGACGGATCAATTTTTGGCGTC
CGATGGTAGTGGTGGTGGTGGATTCGGTGGTGCTGCTGCTGGTGTTGGTG
GTGATGGTAATTTGGAGAGGGAGGGAGCGGCGTCTCCTATTCACCTGACG
CGGAGCAGCGGAGGGAAAGGGGGGAGGAAGGGAGGTAGTGCATGTACAAC
CGTGGCAGCTTCTTCGACGACCCGACGATCGCAGGGAGGGAGGGAGAGAG
GGAGGGAGGAAGAGAAGGAGGGAATGACACCTTTGCGTTCGATTGGGTGG
GATTTGATCGGAGCAGGAGGGAGGGAGGGAGGGAAGGCGACCCTGACGTC
AGCAACGCCGACGATGGTAGGAAATCGCGTGGGTACGAGAAACAAAACTT
CTATCTACGGTAGCAGCAGCAGCAGCAGTAGTAGCAGTGCCATCAGCACA
ACGACGATGATTGACGCAAACAACAAGAGGAAACGCAAGCCACCCCTCCT
TACCTCCTCTCCCTCTACAGCTGCAGCCACAGCAGCGGCGATCAAGGCAG
GTAGGGAGGGAGGGCAGTGGTCAGTGCCAACGCCAGCACAACTGCGGCAG
GTAGCGGAGGAGACGGGCTTGGGGCTGCAAGAGGTGTTGACTGTGTGGAA
AAAGCTCCAGGGCGTCATCAGAGGGTCGTTGTGAGGGAGGGAGAAAAAGA
GGAAAAGAGTGTGTGTGGAAAAGAGGGAGGGGAGAGGAGCAAGAGAGGGG
AGGTGAAAGAGATAGAGAGGGAATAAAAAAGGCAAAGAGGGAGAGAGAAA
AGGGATGAAACAAAACAAAGAGAGAGGGAATGTGGGTAGGCACACACACG
ACTCTCAACGTGCTTGAGAGGCAATCTTCAAGAGTGACAATAGATAGCTG
AAAAGCGTCGTGGAAGATATAGCTTAAGTGACGAGCAAAGACACAGACGC
ACAGAAAAGATGGGAAAGGAACGACAGGAAAGATAGGT
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protein sequence of NO11G02340.1

>NO11G02340.1-protein ID=NO11G02340.1-protein|Name=NO11G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp
MASDAGGWYSFLLGDDVVNTPPQHDDSKALLLPRVNYANNAEDSLEPISD
WLTGQSAQSSPMTLTPPAFRSSSPSLLITSPLPITSTTTASATAFFLSPP
RFTMCLSPLQLSSATSSPWASFLCICRSSSQNKEEQSSPGNYTLPSLLSP
PRDGRATILLRPPPTQQKQGSMWCGQNDEDEEEEDEEGEGEEKVGEEENS
GGVRMRKSTRARKATVKKTALAKRLFDGEYVEDEDKSDGREWEGGREGGA
VMLLSSSSPSSSFSSASSSFAFHSSQPRTISAVTTHRSLSNNSTTRNGIL
PISSATKALCFGSASLPAAKSILLDKVLRGCITNFIVGPRPPRKWMERVA
TRIGVTLKQVDSKCSNIRQRSLDRRGRPLPLARDTSSLVDEAMAAALVAE
MRAELRGLTEQETTDQFLASDGSGGGGFGGAAAGVGGDGNLEREGAASPI
HLTRSSGGKGGRKGGSACTTVAASSTTRRSQGGRERGREEEKEGMTPLRS
IGWDLIGAGGREGGKATLTSATPTMVGNRVGTRNKTSIYGSSSSSSSSSA
ISTTTMIDANNKRKRKPPLLTSSPSTAAATAAAIKAGREGGQWSVPTPAQ
LRQVAEETGLGLQEVLTVWKKLQGVIRGSL*
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mRNA from alignment at chr11:747333..749831+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02340.1 ID=NO11G02340.1|Name=NO11G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2499bp|location=Sequence derived from alignment at chr11:747333..749831+ (Nannochloropsis oceanica)
CTCGATTACTCGGATGACCTCCGGCGGCGTTCCCTTCAAATCGCCTCAGC
ATTTTCTCCTGGCTTTCAAACCCCCACACCAATATCCAACCCCTTACGTT
CGACAGCACCTTCTTCACCTTTAATACCATATTTCAAGACCATGGCATCG
GACGCCGGAGGCTGGTATTCCTTCTTGCTGGGCGACGACGTAGTGAATAC
CCCCCCACAGCACGACGACAGCAAAGCCCTCCTTCTGCCTCGCGTGAATT
ACGCCAATAACGCAGAGGACAGCCTTGAGCCTATAAGCGACTGGCTTACG
GGGCAGTCTGCACAATCCTCGCCGATGACCTTGACGCCGCCTGCATTCCG
GTCATCATCACCCTCCCTCCTCATCACGTCCCCCCTCCCCATCACCTCAA
CTACCACGGCATCTGCCACCGCCTTCTTTCTGAGCCCTCCTCGCTTCACG
ATGTGTCTTTCACCGCTTCAACTATCATCAGCTACCTCCTCTCCTTGGGC
CTCGTTCCTTTGTATCTGCAGGAGCAGCAGCCAGAACAAGGAGGAACAGA
GCAGCCCCGGCAACTACACCCTCCCCAGTCTTCTCTCACCTCCTCGCGAC
GGCCGTGCCACGATATTGTTGCGACCTCCACCAACACAACAGAAGCAAGG
ATCGATGTGGTGTGGCCAGAACGACGAAGACGAGGAGGAGGAGGACGAGG
AAGGGGAAGGGGAGGAGAAGGTGGGAGAGGAGGAGAATAGTGGTGGGGTG
CGGATGCGCAAGAGTACGAGGGCCCGCAAAGCCACTGTGAAGAAAACAGC
ATTAGCAAAGCGACTGTTCGATGGAGAATATGTCGAGGACGAGGATAAGA
GCGATGGAAGGGAATGGGAGGGAGGGAGGGAGGGAGGGGCGGTGATGTTA
CTATCCTCCTCCTCTCCTTCTTCCTCCTTCTCCTCTGCCTCTTCCTCGTT
TGCCTTCCACAGCAGCCAGCCGAGAACGATTTCCGCCGTCACCACCCATC
GTTCCCTCAGCAACAACAGCACCACAAGAAATGGTATTCTTCCTATCTCC
TCTGCAACCAAAGCCTTGTGCTTCGGTTCGGCGTCCCTCCCTGCTGCTAA
GAGCATTCTACTCGACAAAGTCCTGCGTGGGTGTATCACCAACTTCATCG
TGGGCCCTCGCCCTCCCCGCAAATGGATGGAGAGGGTGGCCACCCGGATA
GGGGTAACGTTGAAACAAGTAAGGATGCGAACGAAGCCCTCCTGCTGTCC
TTCGCCTGTTCCTCCTCGTTTCCCCTTCTCCTCTTCCTGTCTCTTCTCCT
TCTCCTCCTCCTCTCGCTCGCTCATAGCATCAAGCCTTCACCTTCTCTCC
CTCCCTCCCTCCCTCCCTCCTTCCCTCAGGTGGACAGCAAATGCAGCAAT
ATCCGGCAACGCAGCCTGGACCGCCGCGGCCGCCCCCTCCCCCTCGCGCG
TGATACCTCCTCCCTCGTCGATGAGGCCATGGCGGCAGCATTGGTGGCCG
AAATGAGAGCCGAGCTCCGGGGCCTTACCGAGCAGGAGACGACGGATCAA
TTTTTGGCGTCCGATGGTAGTGGTGGTGGTGGATTCGGTGGTGCTGCTGC
TGGTGTTGGTGGTGATGGTAATTTGGAGAGGGAGGGAGCGGCGTCTCCTA
TTCACCTGACGCGGAGCAGCGGAGGGAAAGGGGGGAGGAAGGGAGGTAGT
GCATGTACAACCGTGGCAGCTTCTTCGACGACCCGACGATCGCAGGGAGG
GAGGGAGAGAGGGAGGGAGGAAGAGAAGGAGGGAATGACACCTTTGCGTT
CGATTGGGTGGGATTTGATCGGAGCAGGAGGGAGGGAGGGAGGGAAGGCG
ACCCTGACGTCAGCAACGCCGACGATGGTAGGAAATCGCGTGGGTACGAG
AAACAAAACTTCTATCTACGGTAGCAGCAGCAGCAGCAGTAGTAGCAGTG
CCATCAGCACAACGACGATGATTGACGCAAACAACAAGAGGAAACGCAAG
CCACCCCTCCTTACCTCCTCTCCCTCTACAGCTGCAGCCACAGCAGCGGC
GATCAAGGCAGGTAGGGAGGGAGGGCAGTGGTCAGTGCCAACGCCAGCAC
AACTGCGGCAGGTAGCGGAGGAGACGGGCTTGGGGCTGCAAGAGGTGTTG
ACTGTGTGGAAAAAGCTCCAGGGCGTCATCAGAGGGTCGTTGTGAGGGAG
GGAGAAAAAGAGGAAAAGAGTGTGTGTGGAAAAGAGGGAGGGGAGAGGAG
CAAGAGAGGGGAGGTGAAAGAGATAGAGAGGGAATAAAAAAGGCAAAGAG
GGAGAGAGAAAAGGGATGAAACAAAACAAAGAGAGAGGGAATGTGGGTAG
GCACACACACGACTCTCAACGTGCTTGAGAGGCAATCTTCAAGAGTGACA
ATAGATAGCTGAAAAGCGTCGTGGAAGATATAGCTTAAGTGACGAGCAAA
GACACAGACGCACAGAAAAGATGGGAAAGGAACGACAGGAAAGATAGGT
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Coding sequence (CDS) from alignment at chr11:747333..749831+

>NO11G02340.1 ID=NO11G02340.1|Name=NO11G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=1893bp|location=Sequence derived from alignment at chr11:747333..749831+ (Nannochloropsis oceanica)
ATGGCATCGGACGCCGGAGGCTGGTATTCCTTCTTGCTGGGCGACGACGT
AGTGAATACCCCCCCACAGCACGACGACAGCAAAGCCCTCCTTCTGCCTC
GCGTGAATTACGCCAATAACGCAGAGGACAGCCTTGAGCCTATAAGCGAC
TGGCTTACGGGGCAGTCTGCACAATCCTCGCCGATGACCTTGACGCCGCC
TGCATTCCGGTCATCATCACCCTCCCTCCTCATCACGTCCCCCCTCCCCA
TCACCTCAACTACCACGGCATCTGCCACCGCCTTCTTTCTGAGCCCTCCT
CGCTTCACGATGTGTCTTTCACCGCTTCAACTATCATCAGCTACCTCCTC
TCCTTGGGCCTCGTTCCTTTGTATCTGCAGGAGCAGCAGCCAGAACAAGG
AGGAACAGAGCAGCCCCGGCAACTACACCCTCCCCAGTCTTCTCTCACCT
CCTCGCGACGGCCGTGCCACGATATTGTTGCGACCTCCACCAACACAACA
GAAGCAAGGATCGATGTGGTGTGGCCAGAACGACGAAGACGAGGAGGAGG
AGGACGAGGAAGGGGAAGGGGAGGAGAAGGTGGGAGAGGAGGAGAATAGT
GGTGGGGTGCGGATGCGCAAGAGTACGAGGGCCCGCAAAGCCACTGTGAA
GAAAACAGCATTAGCAAAGCGACTGTTCGATGGAGAATATGTCGAGGACG
AGGATAAGAGCGATGGAAGGGAATGGGAGGGAGGGAGGGAGGGAGGGGCG
GTGATGTTACTATCCTCCTCCTCTCCTTCTTCCTCCTTCTCCTCTGCCTC
TTCCTCGTTTGCCTTCCACAGCAGCCAGCCGAGAACGATTTCCGCCGTCA
CCACCCATCGTTCCCTCAGCAACAACAGCACCACAAGAAATGGTATTCTT
CCTATCTCCTCTGCAACCAAAGCCTTGTGCTTCGGTTCGGCGTCCCTCCC
TGCTGCTAAGAGCATTCTACTCGACAAAGTCCTGCGTGGGTGTATCACCA
ACTTCATCGTGGGCCCTCGCCCTCCCCGCAAATGGATGGAGAGGGTGGCC
ACCCGGATAGGGGTAACGTTGAAACAAGTGGACAGCAAATGCAGCAATAT
CCGGCAACGCAGCCTGGACCGCCGCGGCCGCCCCCTCCCCCTCGCGCGTG
ATACCTCCTCCCTCGTCGATGAGGCCATGGCGGCAGCATTGGTGGCCGAA
ATGAGAGCCGAGCTCCGGGGCCTTACCGAGCAGGAGACGACGGATCAATT
TTTGGCGTCCGATGGTAGTGGTGGTGGTGGATTCGGTGGTGCTGCTGCTG
GTGTTGGTGGTGATGGTAATTTGGAGAGGGAGGGAGCGGCGTCTCCTATT
CACCTGACGCGGAGCAGCGGAGGGAAAGGGGGGAGGAAGGGAGGTAGTGC
ATGTACAACCGTGGCAGCTTCTTCGACGACCCGACGATCGCAGGGAGGGA
GGGAGAGAGGGAGGGAGGAAGAGAAGGAGGGAATGACACCTTTGCGTTCG
ATTGGGTGGGATTTGATCGGAGCAGGAGGGAGGGAGGGAGGGAAGGCGAC
CCTGACGTCAGCAACGCCGACGATGGTAGGAAATCGCGTGGGTACGAGAA
ACAAAACTTCTATCTACGGTAGCAGCAGCAGCAGCAGTAGTAGCAGTGCC
ATCAGCACAACGACGATGATTGACGCAAACAACAAGAGGAAACGCAAGCC
ACCCCTCCTTACCTCCTCTCCCTCTACAGCTGCAGCCACAGCAGCGGCGA
TCAAGGCAGGTAGGGAGGGAGGGCAGTGGTCAGTGCCAACGCCAGCACAA
CTGCGGCAGGTAGCGGAGGAGACGGGCTTGGGGCTGCAAGAGGTGTTGAC
TGTGTGGAAAAAGCTCCAGGGCGTCATCAGAGGGTCGTTGTGA
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Synonyms
Publications