NO11G02290.1, NO11G02290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02290.1
Unique NameNO11G02290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1881
Alignment locationchr11:737136..739016 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:737136..739016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G02290.1 vs.
Match: EWM24981.1 (60s ribosomal export protein [Nannochloropsis gaditana])

HSP 1 Score: 912.5 bits (2357), Expect = 7.000e-262
Identity = 478/620 (77.10%), Postives = 530/620 (85.48%), Query Frame = 0 
Query:    1 MADVMQPVAATQTPVAAICCMCAINIQPNPTNMCLQCLRTQVNIATGLSTRVTMHQCRGCLKYMGGSGGTGWSHYEAESRELMAVCLRKVAGLNRLRLIDAGWIWTEPHSKRLKLKLTVQKEVMNGAVLQEAVVVEFVVRNQQCPDCCASYTIGAWEAIVQVRQRVDHKRTFLHLEQLILKHNAHAQALQIQGFKDGMDFYFAKRNQAARFTEFLETVCPVKVKQSKKLVSQDDHSNIFNYKYTSIIEIVPVCKDDLVVLPTKLAQNLGDIARLSLVQRVLNHLHLVDPITGQTADLTADKFHKAGFEFQALLSAGRLVQFMVLGIEPIMIPTKTSAPVRRANRHRLAEVEVALMADLGVNDTRYRVVTHLGHILRAGDTVLGYLLATASMNSSDAEELEAKTRAGLPDVVLVRKVYSSEGRLKKPAWKLKTFEADEMEVMEARDAEKEDRELEEYRQQLEGDREMRRNVNLYKNDRMSMMAANKTTHMMDGEEILVGEKKAKKRKSKKGLTPETPPTKAGGEEVMGMGEREEVDDDDDDDDEDDDEAVQLDELLDDLELDDPDAPPDDHEAQVLVGEGASAGIRGVSKDFAFTFLPGKGHTGGGVGESGSKKRMDEGEE 621
            MADVM P+A  QTPVAAICCMCAINIQPNPTNMCLQCLRTQVNIA+GLSTRVTMHQCRGCLKYMGGSGGTGWSHYEAESRELMAVCLRKVAGLNRLRL+DAGWIWTEPHSKRLKLKLTVQ+EVMNGAVLQEAVVVEFVVRNQQCPDC ASYTIGAW+AIVQVRQRVDHKRTFLHLEQLILKHNAHAQALQIQGF DGMDFYFA+RNQAARFTEFLET CPV+VKQSKKLVSQDDHSN+FNYKYT+IIEIVPVCKDDLV+LPTKLAQNLGDIARL LV RVLNHLHL+DP+TGQTA+++ +K+HKAGFEF+ALLSA RLV+FMVLG EP + PTKTSAP RR+ RHRLAEVEVALM+DLG NDTRYRV THLGHILRAGDTVLGYLLATAS+NS+DA+ELE KTRAGLPD VLVRKVYS+EGR+ +PAW+LK FEADEMEV+EA +AE+EDR+L +YRQQLEGDREMRR VN+YK  R     A  T H    E   +G+K  K +   + +T  +   +  G   +   +R   +   +D  EDD+EA++LDELLDDLELDDPDAPPDDHEAQVLVG+ +S GI GVSKDFAFTF P K       G     K   + EE
Sbjct:    1 MADVMAPIAPNQTPVAAICCMCAINIQPNPTNMCLQCLRTQVNIASGLSTRVTMHQCRGCLKYMGGSGGTGWSHYEAESRELMAVCLRKVAGLNRLRLVDAGWIWTEPHSKRLKLKLTVQQEVMNGAVLQEAVVVEFVVRNQQCPDCQASYTIGAWKAIVQVRQRVDHKRTFLHLEQLILKHNAHAQALQIQGFADGMDFYFAERNQAARFTEFLETACPVRVKQSKKLVSQDDHSNVFNYKYTTIIEIVPVCKDDLVILPTKLAQNLGDIARLCLVLRVLNHLHLIDPLTGQTAEVSVEKYHKAGFEFRALLSASRLVEFMVLGSEPALAPTKTSAPARRSKRHRLAEVEVALMSDLGANDTRYRVFTHLGHILRAGDTVLGYLLATASLNSADADELETKTRAGLPDAVLVRKVYSNEGRI-RPAWRLKKFEADEMEVVEAGNAEQEDRDLRDYRQQLEGDREMRRRVNMYKAGRPLPGGAEDTDH----ENAALGQKAGKTKGKVEKMTVVSAMGEGDGSTRLDERDRSTNEGLGEDVGEDDEEALRLDELLDDLELDDPDAPPDDHEAQVLVGDVSSTGIAGVSKDFAFTFQP-KTRNDDRDGNHAKTKDEQDAEE 614
The following BLAST results are available for this feature:
BLAST of NO11G02290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24981.17.000e-26277.1060s ribosomal export protein [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02290NO11G02290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02290.1NO11G02290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02290.1.cds1NO11G02290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02290.1 ID=NO11G02290.1|Name=NO11G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp
ATGGCGGACGTCATGCAGCCCGTGGCGGCGACCCAGACACCGGTGGCTGC
CATTTGCTGCATGTGCGCCATCAACATCCAGCCCAACCCCACCAACATGT
GCCTGCAGTGTCTTCGGACCCAAGTCAACATTGCCACGGGTCTGTCCACG
CGGGTGACCATGCACCAATGCCGTGGCTGCCTCAAGTACATGGGCGGCTC
GGGTGGAACGGGCTGGTCGCACTACGAGGCCGAGTCTCGGGAACTGATGG
CCGTGTGCTTGCGCAAGGTGGCGGGCCTGAATCGCTTGCGCCTGATTGAC
GCCGGTTGGATTTGGACGGAGCCCCACTCGAAGCGGCTGAAGCTAAAGCT
GACGGTGCAGAAAGAGGTGATGAACGGCGCCGTCCTCCAAGAGGCGGTCG
TTGTGGAGTTTGTTGTGCGCAATCAGCAGTGCCCGGACTGCTGCGCGTCC
TACACCATCGGGGCTTGGGAGGCCATTGTCCAAGTCCGGCAACGGGTAGA
CCACAAGCGGACGTTCTTGCACCTTGAGCAACTGATTCTGAAGCATAACG
CCCATGCGCAGGCCTTGCAGATCCAGGGCTTCAAGGACGGGATGGATTTT
TATTTTGCGAAGCGGAACCAGGCCGCCCGGTTTACAGAGTTTTTGGAGAC
CGTTTGCCCTGTCAAGGTGAAGCAGTCCAAGAAGCTGGTCTCGCAAGACG
ATCACTCGAACATCTTTAACTACAAGTACACGAGTATAATTGAGATAGTG
CCTGTGTGCAAGGACGACTTGGTGGTGCTTCCCACGAAGCTCGCCCAGAA
CCTGGGGGACATCGCCCGCCTCTCCCTCGTTCAACGTGTCCTCAATCACC
TCCACCTCGTCGATCCCATCACGGGGCAAACGGCCGATCTGACCGCCGAT
AAATTTCACAAGGCTGGGTTTGAATTCCAGGCGTTGCTATCTGCCGGGCG
CTTAGTCCAGTTTATGGTGTTGGGCATCGAGCCCATCATGATTCCGACCA
AGACTTCAGCACCTGTTCGTAGGGCAAATCGTCATCGACTGGCTGAGGTG
GAGGTGGCGCTGATGGCTGATTTAGGGGTGAATGACACGCGGTATCGAGT
GGTGACGCATTTGGGGCATATTTTGAGGGCTGGGGATACGGTGTTGGGAT
ATTTGCTAGCGACTGCGTCGATGAATAGTTCGGATGCGGAGGAGCTGGAA
GCGAAGACCCGGGCAGGGCTTCCGGACGTGGTGCTTGTCCGCAAGGTCTA
TTCGAGCGAAGGGAGGCTGAAGAAACCAGCGTGGAAGCTTAAGACATTTG
AGGCGGATGAGATGGAGGTGATGGAGGCGAGGGACGCTGAGAAAGAGGAT
AGGGAGCTTGAAGAATACAGGCAGCAGTTGGAGGGTGATAGGGAGATGCG
GAGAAATGTGAATTTGTACAAGAATGACAGGATGTCGATGATGGCCGCAA
ACAAGACAACACATATGATGGATGGGGAGGAGATATTGGTTGGAGAGAAA
AAGGCGAAGAAGCGCAAAAGCAAGAAAGGACTGACACCCGAGACGCCGCC
GACGAAAGCTGGTGGGGAGGAGGTCATGGGCATGGGCGAGAGAGAAGAGG
TGGACGACGACGACGACGACGACGACGAGGATGATGATGAAGCTGTGCAG
CTGGATGAGTTGCTGGACGACTTGGAGCTTGACGACCCAGACGCGCCCCC
TGACGACCATGAAGCGCAAGTGCTGGTGGGAGAGGGAGCTAGCGCCGGGA
TCCGGGGGGTCAGTAAGGATTTTGCTTTTACCTTTCTACCAGGCAAGGGC
CACACTGGCGGTGGAGTTGGAGAGAGTGGATCGAAAAAGAGGATGGATGA
AGGGGAGGAAGGCTTCGGTGATGACTTGTAG
back to top

protein sequence of NO11G02290.1

>NO11G02290.1-protein ID=NO11G02290.1-protein|Name=NO11G02290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=627bp
MADVMQPVAATQTPVAAICCMCAINIQPNPTNMCLQCLRTQVNIATGLST
RVTMHQCRGCLKYMGGSGGTGWSHYEAESRELMAVCLRKVAGLNRLRLID
AGWIWTEPHSKRLKLKLTVQKEVMNGAVLQEAVVVEFVVRNQQCPDCCAS
YTIGAWEAIVQVRQRVDHKRTFLHLEQLILKHNAHAQALQIQGFKDGMDF
YFAKRNQAARFTEFLETVCPVKVKQSKKLVSQDDHSNIFNYKYTSIIEIV
PVCKDDLVVLPTKLAQNLGDIARLSLVQRVLNHLHLVDPITGQTADLTAD
KFHKAGFEFQALLSAGRLVQFMVLGIEPIMIPTKTSAPVRRANRHRLAEV
EVALMADLGVNDTRYRVVTHLGHILRAGDTVLGYLLATASMNSSDAEELE
AKTRAGLPDVVLVRKVYSSEGRLKKPAWKLKTFEADEMEVMEARDAEKED
RELEEYRQQLEGDREMRRNVNLYKNDRMSMMAANKTTHMMDGEEILVGEK
KAKKRKSKKGLTPETPPTKAGGEEVMGMGEREEVDDDDDDDDEDDDEAVQ
LDELLDDLELDDPDAPPDDHEAQVLVGEGASAGIRGVSKDFAFTFLPGKG
HTGGGVGESGSKKRMDEGEEGFGDDL*
back to top

mRNA from alignment at chr11:737136..739016+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02290.1 ID=NO11G02290.1|Name=NO11G02290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp|location=Sequence derived from alignment at chr11:737136..739016+ (Nannochloropsis oceanica)
ATGGCGGACGTCATGCAGCCCGTGGCGGCGACCCAGACACCGGTGGCTGC
CATTTGCTGCATGTGCGCCATCAACATCCAGCCCAACCCCACCAACATGT
GCCTGCAGTGTCTTCGGACCCAAGTCAACATTGCCACGGGTCTGTCCACG
CGGGTGACCATGCACCAATGCCGTGGCTGCCTCAAGTACATGGGCGGCTC
GGGTGGAACGGGCTGGTCGCACTACGAGGCCGAGTCTCGGGAACTGATGG
CCGTGTGCTTGCGCAAGGTGGCGGGCCTGAATCGCTTGCGCCTGATTGAC
GCCGGTTGGATTTGGACGGAGCCCCACTCGAAGCGGCTGAAGCTAAAGCT
GACGGTGCAGAAAGAGGTGATGAACGGCGCCGTCCTCCAAGAGGCGGTCG
TTGTGGAGTTTGTTGTGCGCAATCAGCAGTGCCCGGACTGCTGCGCGTCC
TACACCATCGGGGCTTGGGAGGCCATTGTCCAAGTCCGGCAACGGGTAGA
CCACAAGCGGACGTTCTTGCACCTTGAGCAACTGATTCTGAAGCATAACG
CCCATGCGCAGGCCTTGCAGATCCAGGGCTTCAAGGACGGGATGGATTTT
TATTTTGCGAAGCGGAACCAGGCCGCCCGGTTTACAGAGTTTTTGGAGAC
CGTTTGCCCTGTCAAGGTGAAGCAGTCCAAGAAGCTGGTCTCGCAAGACG
ATCACTCGAACATCTTTAACTACAAGTACACGAGTATAATTGAGATAGTG
CCTGTGTGCAAGGACGACTTGGTGGTGCTTCCCACGAAGCTCGCCCAGAA
CCTGGGGGACATCGCCCGCCTCTCCCTCGTTCAACGTGTCCTCAATCACC
TCCACCTCGTCGATCCCATCACGGGGCAAACGGCCGATCTGACCGCCGAT
AAATTTCACAAGGCTGGGTTTGAATTCCAGGCGTTGCTATCTGCCGGGCG
CTTAGTCCAGTTTATGGTGTTGGGCATCGAGCCCATCATGATTCCGACCA
AGACTTCAGCACCTGTTCGTAGGGCAAATCGTCATCGACTGGCTGAGGTG
GAGGTGGCGCTGATGGCTGATTTAGGGGTGAATGACACGCGGTATCGAGT
GGTGACGCATTTGGGGCATATTTTGAGGGCTGGGGATACGGTGTTGGGAT
ATTTGCTAGCGACTGCGTCGATGAATAGTTCGGATGCGGAGGAGCTGGAA
GCGAAGACCCGGGCAGGGCTTCCGGACGTGGTGCTTGTCCGCAAGGTCTA
TTCGAGCGAAGGGAGGCTGAAGAAACCAGCGTGGAAGCTTAAGACATTTG
AGGCGGATGAGATGGAGGTGATGGAGGCGAGGGACGCTGAGAAAGAGGAT
AGGGAGCTTGAAGAATACAGGCAGCAGTTGGAGGGTGATAGGGAGATGCG
GAGAAATGTGAATTTGTACAAGAATGACAGGATGTCGATGATGGCCGCAA
ACAAGACAACACATATGATGGATGGGGAGGAGATATTGGTTGGAGAGAAA
AAGGCGAAGAAGCGCAAAAGCAAGAAAGGACTGACACCCGAGACGCCGCC
GACGAAAGCTGGTGGGGAGGAGGTCATGGGCATGGGCGAGAGAGAAGAGG
TGGACGACGACGACGACGACGACGACGAGGATGATGATGAAGCTGTGCAG
CTGGATGAGTTGCTGGACGACTTGGAGCTTGACGACCCAGACGCGCCCCC
TGACGACCATGAAGCGCAAGTGCTGGTGGGAGAGGGAGCTAGCGCCGGGA
TCCGGGGGGTCAGTAAGGATTTTGCTTTTACCTTTCTACCAGGCAAGGGC
CACACTGGCGGTGGAGTTGGAGAGAGTGGATCGAAAAAGAGGATGGATGA
AGGGGAGGAAGGCTTCGGTGATGACTTGTAG
back to top

Coding sequence (CDS) from alignment at chr11:737136..739016+

>NO11G02290.1 ID=NO11G02290.1|Name=NO11G02290.1|organism=Nannochloropsis oceanica|type=CDS|length=1881bp|location=Sequence derived from alignment at chr11:737136..739016+ (Nannochloropsis oceanica)
ATGGCGGACGTCATGCAGCCCGTGGCGGCGACCCAGACACCGGTGGCTGC
CATTTGCTGCATGTGCGCCATCAACATCCAGCCCAACCCCACCAACATGT
GCCTGCAGTGTCTTCGGACCCAAGTCAACATTGCCACGGGTCTGTCCACG
CGGGTGACCATGCACCAATGCCGTGGCTGCCTCAAGTACATGGGCGGCTC
GGGTGGAACGGGCTGGTCGCACTACGAGGCCGAGTCTCGGGAACTGATGG
CCGTGTGCTTGCGCAAGGTGGCGGGCCTGAATCGCTTGCGCCTGATTGAC
GCCGGTTGGATTTGGACGGAGCCCCACTCGAAGCGGCTGAAGCTAAAGCT
GACGGTGCAGAAAGAGGTGATGAACGGCGCCGTCCTCCAAGAGGCGGTCG
TTGTGGAGTTTGTTGTGCGCAATCAGCAGTGCCCGGACTGCTGCGCGTCC
TACACCATCGGGGCTTGGGAGGCCATTGTCCAAGTCCGGCAACGGGTAGA
CCACAAGCGGACGTTCTTGCACCTTGAGCAACTGATTCTGAAGCATAACG
CCCATGCGCAGGCCTTGCAGATCCAGGGCTTCAAGGACGGGATGGATTTT
TATTTTGCGAAGCGGAACCAGGCCGCCCGGTTTACAGAGTTTTTGGAGAC
CGTTTGCCCTGTCAAGGTGAAGCAGTCCAAGAAGCTGGTCTCGCAAGACG
ATCACTCGAACATCTTTAACTACAAGTACACGAGTATAATTGAGATAGTG
CCTGTGTGCAAGGACGACTTGGTGGTGCTTCCCACGAAGCTCGCCCAGAA
CCTGGGGGACATCGCCCGCCTCTCCCTCGTTCAACGTGTCCTCAATCACC
TCCACCTCGTCGATCCCATCACGGGGCAAACGGCCGATCTGACCGCCGAT
AAATTTCACAAGGCTGGGTTTGAATTCCAGGCGTTGCTATCTGCCGGGCG
CTTAGTCCAGTTTATGGTGTTGGGCATCGAGCCCATCATGATTCCGACCA
AGACTTCAGCACCTGTTCGTAGGGCAAATCGTCATCGACTGGCTGAGGTG
GAGGTGGCGCTGATGGCTGATTTAGGGGTGAATGACACGCGGTATCGAGT
GGTGACGCATTTGGGGCATATTTTGAGGGCTGGGGATACGGTGTTGGGAT
ATTTGCTAGCGACTGCGTCGATGAATAGTTCGGATGCGGAGGAGCTGGAA
GCGAAGACCCGGGCAGGGCTTCCGGACGTGGTGCTTGTCCGCAAGGTCTA
TTCGAGCGAAGGGAGGCTGAAGAAACCAGCGTGGAAGCTTAAGACATTTG
AGGCGGATGAGATGGAGGTGATGGAGGCGAGGGACGCTGAGAAAGAGGAT
AGGGAGCTTGAAGAATACAGGCAGCAGTTGGAGGGTGATAGGGAGATGCG
GAGAAATGTGAATTTGTACAAGAATGACAGGATGTCGATGATGGCCGCAA
ACAAGACAACACATATGATGGATGGGGAGGAGATATTGGTTGGAGAGAAA
AAGGCGAAGAAGCGCAAAAGCAAGAAAGGACTGACACCCGAGACGCCGCC
GACGAAAGCTGGTGGGGAGGAGGTCATGGGCATGGGCGAGAGAGAAGAGG
TGGACGACGACGACGACGACGACGACGAGGATGATGATGAAGCTGTGCAG
CTGGATGAGTTGCTGGACGACTTGGAGCTTGACGACCCAGACGCGCCCCC
TGACGACCATGAAGCGCAAGTGCTGGTGGGAGAGGGAGCTAGCGCCGGGA
TCCGGGGGGTCAGTAAGGATTTTGCTTTTACCTTTCTACCAGGCAAGGGC
CACACTGGCGGTGGAGTTGGAGAGAGTGGATCGAAAAAGAGGATGGATGA
AGGGGAGGAAGGCTTCGGTGATGACTTGTAG
back to top
Synonyms
Publications