NO11G02280.1, NO11G02280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02280.1
Unique NameNO11G02280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1089
Alignment locationchr11:735553..736886 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:735553..736886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02280.1 vs.
Match: EWM24982.1 (aldo keto reductase [Nannochloropsis gaditana])

HSP 1 Score: 453.0 bits (1164), Expect = 8.800e-124
Identity = 219/306 (71.57%), Postives = 256/306 (83.66%), Query Frame = 0 
Query:   56 ARSHNAAATAGTSRPPPTCQASFSLGPEGMLPMPAVGLGTFQVKEEAGYEAVKAAINLGYTHIDTASVYRNEAAIGRAIRESGIPREQFFITTKLAPKDQGASKAYAALCQSLHDLGMEYVDLFLIHWPAAAGLKHNDPLNKVRRHESYVELQQGVLEGKIKSLGVSNFEIPHLEALLADPAITIPPSVNQVECHPFYPQRELHTYCRQHNIILQAYSSLGQGNTDLLAHPTIKAIAAKQKMTPAQVLLRWALQRGIPVLPKTISPKRMVENLVALRLQLDVEDMQALDGLDDKCHVKYAWDPSQV 362
            + SH   A    S P P+ QA++SLGP+  L MPAVGLGTFQVKE+AGYEAVKAAI +GYTHIDTASVYRNEAA+GRAIRES +PR + F+TTKLAPKDQGA KAYA+LC+SL +LG++YVDL+LIHWPAA+GLKH+DPLN++RRHESYVELQQGV EGKIK+LGVSNFEI HL ALLADPA+T PPSVNQVECHP YPQ +L  YCR+H I++QAYSSLGQG  DLLAHP + + A K+ MTPAQVLLRWALQ+GIPVLPKT +  RM ENL AL  +L  EDM AL+GLD+  + K+AWDP QV
Sbjct:    2 SNSHETPA----SHPLPSFQATYSLGPDSPLSMPAVGLGTFQVKEQAGYEAVKAAIKVGYTHIDTASVYRNEAAVGRAIRESNVPRHELFLTTKLAPKDQGAGKAYASLCRSLSELGLDYVDLYLIHWPAASGLKHDDPLNRIRRHESYVELQQGVREGKIKNLGVSNFEIRHLTALLADPAVTYPPSVNQVECHPLYPQIQLREYCRKHGILIQAYSSLGQGKQDLLAHPVVTSTATKRGMTPAQVLLRWALQQGIPVLPKTTNTMRMTENLGALNKELQNEDMHALNGLDESLYRKFAWDPCQV 303
The following BLAST results are available for this feature:
BLAST of NO11G02280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24982.18.800e-12471.57aldo keto reductase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02280NO11G02280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02280.1NO11G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02280.1.cds1NO11G02280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02280.1.cds2NO11G02280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02280.1 ID=NO11G02280.1|Name=NO11G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp
ATGGTCATTGCTGCCCGAGTTTTGGTGCTCGCCGCCTTGCCCAACCTCCT
GCCTCTCCTGACGGCCTCGGCACTGCACAAATCAAGAAGTACCTTCCTCG
TCCATACGCCACGTTATACTAGAGTGAGCCGCTTCTCTTCAATGGCGTGT
CCGATCAATCTGCAAGCAAGGTCACACAACGCGGCGGCTACAGCTGGCAC
CTCAAGACCACCACCCACCTGCCAGGCTTCTTTTTCTCTGGGGCCTGAGG
GAATGCTCCCCATGCCCGCTGTCGGCCTGGGCACATTTCAAGTCAAGGAA
GAGGCAGGTTATGAAGCTGTCAAAGCAGCCATCAATCTTGGGTACACCCA
CATCGACACCGCCTCAGTCTACCGTAACGAAGCTGCCATCGGGCGAGCCA
TCCGTGAATCAGGCATTCCGCGCGAGCAGTTCTTTATAACGACCAAACTT
GCTCCGAAGGATCAAGGGGCAAGCAAAGCTTATGCTGCCCTTTGTCAGTC
CCTGCATGATTTGGGCATGGAGTATGTCGACCTCTTCCTCATCCACTGGC
CAGCTGCTGCCGGGCTCAAGCACAATGACCCTCTCAACAAAGTACGACGT
CATGAGAGCTATGTGGAGCTGCAGCAAGGCGTACTGGAAGGGAAGATCAA
AAGCTTGGGAGTGTCTAACTTTGAAATTCCGCATCTAGAGGCCCTCCTTG
CCGATCCCGCCATCACCATCCCCCCAAGCGTCAACCAAGTCGAATGTCAT
CCCTTCTACCCGCAACGGGAGCTTCACACTTACTGTAGACAGCATAATAT
CATCCTACAGGCATACAGTTCCCTGGGACAAGGCAACACAGATCTTTTGG
CGCATCCAACCATCAAAGCTATTGCGGCCAAGCAAAAAATGACACCCGCA
CAAGTGTTGTTGCGGTGGGCGCTCCAGCGGGGGATTCCTGTTTTACCCAA
GACCATTAGTCCTAAACGAATGGTTGAGAATCTGGTAGCGTTGCGTCTCC
AGCTAGATGTGGAGGACATGCAGGCTTTGGATGGCTTGGACGACAAGTGT
CACGTCAAGTATGCGTGGGACCCGTCTCAAGTTGTTTAG
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protein sequence of NO11G02280.1

>NO11G02280.1-protein ID=NO11G02280.1-protein|Name=NO11G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MVIAARVLVLAALPNLLPLLTASALHKSRSTFLVHTPRYTRVSRFSSMAC
PINLQARSHNAAATAGTSRPPPTCQASFSLGPEGMLPMPAVGLGTFQVKE
EAGYEAVKAAINLGYTHIDTASVYRNEAAIGRAIRESGIPREQFFITTKL
APKDQGASKAYAALCQSLHDLGMEYVDLFLIHWPAAAGLKHNDPLNKVRR
HESYVELQQGVLEGKIKSLGVSNFEIPHLEALLADPAITIPPSVNQVECH
PFYPQRELHTYCRQHNIILQAYSSLGQGNTDLLAHPTIKAIAAKQKMTPA
QVLLRWALQRGIPVLPKTISPKRMVENLVALRLQLDVEDMQALDGLDDKC
HVKYAWDPSQVV*
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mRNA from alignment at chr11:735553..736886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02280.1 ID=NO11G02280.1|Name=NO11G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1334bp|location=Sequence derived from alignment at chr11:735553..736886- (Nannochloropsis oceanica)
ATGGTCATTGCTGCCCGAGTTTTGGTGCTCGCCGCCTTGCCCAACCTCCT
GCCTCTCCTGACGGCCTCGGCACTGCACAAATCAAGAAGTACCTTCCTCG
TCCATACGCCACGTTATACTAGAGTGAGCCGCTTCTCTTCAATGGCGTGT
CCGATCAATCTGCAAGCAAGGTCACACAACGCGGCGGCTACAGCTGGCAC
CTCAAGACCACCACCCACCTGCCAGGCTTCTTTTTCTCTGGGGCCTGAGG
GAATGCTCCCCATGCCCGCTGTCGGCCTGGGCACATTTCAAGTCAAGGAA
GAGGCAGGTTATGAAGCTGTCAAAGCAGCCATCAATGTAAGAAATCGAAA
AGTCGAGGGTTCGGGTTTATGTTCCTCCCTGCATCGCTCGATCCCTGGGC
CCCTGGCAAGTCACGGTAGTGAGCAAGGCGTTTATGCATCTATTTCGCAG
AGGACCTCATGATCTCGGCTTCATTCCCGTCAATTTTTATGCTATCTTAA
ATAATATTTCAATGTCCCGCCGCCGCACTTACATCGATCCTTTATCCTCT
CTCTCCCTCACACTCCTCACCAAACATACAGCTTGGGTACACCCACATCG
ACACCGCCTCAGTCTACCGTAACGAAGCTGCCATCGGGCGAGCCATCCGT
GAATCAGGCATTCCGCGCGAGCAGTTCTTTATAACGACCAAACTTGCTCC
GAAGGATCAAGGGGCAAGCAAAGCTTATGCTGCCCTTTGTCAGTCCCTGC
ATGATTTGGGCATGGAGTATGTCGACCTCTTCCTCATCCACTGGCCAGCT
GCTGCCGGGCTCAAGCACAATGACCCTCTCAACAAAGTACGACGTCATGA
GAGCTATGTGGAGCTGCAGCAAGGCGTACTGGAAGGGAAGATCAAAAGCT
TGGGAGTGTCTAACTTTGAAATTCCGCATCTAGAGGCCCTCCTTGCCGAT
CCCGCCATCACCATCCCCCCAAGCGTCAACCAAGTCGAATGTCATCCCTT
CTACCCGCAACGGGAGCTTCACACTTACTGTAGACAGCATAATATCATCC
TACAGGCATACAGTTCCCTGGGACAAGGCAACACAGATCTTTTGGCGCAT
CCAACCATCAAAGCTATTGCGGCCAAGCAAAAAATGACACCCGCACAAGT
GTTGTTGCGGTGGGCGCTCCAGCGGGGGATTCCTGTTTTACCCAAGACCA
TTAGTCCTAAACGAATGGTTGAGAATCTGGTAGCGTTGCGTCTCCAGCTA
GATGTGGAGGACATGCAGGCTTTGGATGGCTTGGACGACAAGTGTCACGT
CAAGTATGCGTGGGACCCGTCTCAAGTTGTTTAG
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Coding sequence (CDS) from alignment at chr11:735553..736886-

>NO11G02280.1 ID=NO11G02280.1|Name=NO11G02280.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr11:735553..736886- (Nannochloropsis oceanica)
ATGGTCATTGCTGCCCGAGTTTTGGTGCTCGCCGCCTTGCCCAACCTCCT
GCCTCTCCTGACGGCCTCGGCACTGCACAAATCAAGAAGTACCTTCCTCG
TCCATACGCCACGTTATACTAGAGTGAGCCGCTTCTCTTCAATGGCGTGT
CCGATCAATCTGCAAGCAAGGTCACACAACGCGGCGGCTACAGCTGGCAC
CTCAAGACCACCACCCACCTGCCAGGCTTCTTTTTCTCTGGGGCCTGAGG
GAATGCTCCCCATGCCCGCTGTCGGCCTGGGCACATTTCAAGTCAAGGAA
GAGGCAGGTTATGAAGCTGTCAAAGCAGCCATCAATCTTGGGTACACCCA
CATCGACACCGCCTCAGTCTACCGTAACGAAGCTGCCATCGGGCGAGCCA
TCCGTGAATCAGGCATTCCGCGCGAGCAGTTCTTTATAACGACCAAACTT
GCTCCGAAGGATCAAGGGGCAAGCAAAGCTTATGCTGCCCTTTGTCAGTC
CCTGCATGATTTGGGCATGGAGTATGTCGACCTCTTCCTCATCCACTGGC
CAGCTGCTGCCGGGCTCAAGCACAATGACCCTCTCAACAAAGTACGACGT
CATGAGAGCTATGTGGAGCTGCAGCAAGGCGTACTGGAAGGGAAGATCAA
AAGCTTGGGAGTGTCTAACTTTGAAATTCCGCATCTAGAGGCCCTCCTTG
CCGATCCCGCCATCACCATCCCCCCAAGCGTCAACCAAGTCGAATGTCAT
CCCTTCTACCCGCAACGGGAGCTTCACACTTACTGTAGACAGCATAATAT
CATCCTACAGGCATACAGTTCCCTGGGACAAGGCAACACAGATCTTTTGG
CGCATCCAACCATCAAAGCTATTGCGGCCAAGCAAAAAATGACACCCGCA
CAAGTGTTGTTGCGGTGGGCGCTCCAGCGGGGGATTCCTGTTTTACCCAA
GACCATTAGTCCTAAACGAATGGTTGAGAATCTGGTAGCGTTGCGTCTCC
AGCTAGATGTGGAGGACATGCAGGCTTTGGATGGCTTGGACGACAAGTGT
CACGTCAAGTATGCGTGGGACCCGTCTCAAGTTGTTTAG
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Synonyms
Publications