NO11G02270.1, NO11G02270.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO11G02270.1
Unique Name	NO11G02270.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1914
Alignment location	chr11:733313..735226 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr11	genome	chr11:733313..735226 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO11G02270.1 vs.

BLAST of NO11G02270.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO11G02270	NO11G02270	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO11G02270.1	NO11G02270.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO11G02270.1.cds1	NO11G02270.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:733313..735226-
coding sequence from alignment at chr11:733313..735226-

mRNA sequence

>NO11G02270.1 ID=NO11G02270.1|Name=NO11G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp
ATGGAGTTCTTTGTGCCAGTAGGGAAAAGCGGTAGCAGCCAAGACGACCA
TGAACATCATCCGACCAGCAGCAGCCGGCCCACACACCAATACCAGGACG
ACGACAGCCCACCTGCAGCCACACACAGTACAGCTGACGACAAGTTGGCA
TGGCTGCAACAGAATTTGGGGATGCATATGCTAGATGGTGCCAGTGGCAA
TCTCACTGGCGCCGAGCTCGAGGCCGCCCTGACGGCGATGCCCCACACTC
TCTTGCCCTTGCTGTACAAATTGACGACACAAGTGCGAGCATTTCAGGAG
CAAAATACGGAGCTCATGTTCGATCTGAAAAAGAATCGAGCTGAAGCGGA
GCGACTGATGCAAGAAAGGGCCAGTATGTACGACAAGGTGGATGCCGCCC
ATCAGGACCGACAAGCCGCCGAGAGCATGCTGGCCTCCATGCGGGCCGAG
ACCGCCGCCTTGGAAAAGCGATGGAGCGAGGAGAAGAATGAGCTCCATGG
GCGCTTGGCACGTTCAACTTGGAAAGACTTAACCATCCGCGCGCAGCTCA
AGAAGAAGGATATGGAGTACGAGAAGCTTCAGAAGCAATTGACGCGTAGC
ATCGGGTCGAGCAGCGGGAGCAAGAGTACCACCGGCACCGCGCGAGGCAC
GGTGAATCGCGTCCGAAGCATCGACATCACCCCCAAACCGTTGGTATACA
GCGGCGGCAGCAGTGACTTGGTGGGGGATGAGGCCTCTCGGGCGGCGTTG
GCGGCTTGCGACCACCGACAGACCTTGTTGTTGGAGGAGAATGCTGAGCT
TCGGGAGACCCTCAGGTGCATGTATGCAGAGATTCAGGGACTGCAAGATC
AATACGGCGATTTGGTTGAAGAAGTAGAGAGTTGTCGAATCTGGTACCAC
GAGGAGCTCGCCAAGGCGAAGGGGGCGGCAGGGACCTCGTTGCTTTCACC
ACCTCTAAAAGGAGAGGAGGAATCGATCTTTTCCCCTCAGCCGACGAGCC
GCCGATTCGAAGTGGAGGCATTTGAGATGCCTCCGGAGTGGTTGAGGCGT
GTGGTGGGAGAAGAGCTGCGGGCAAATATGGCTGAAATGCGTCGGCGATA
CGATAGACTGCGGGAGGTGATCATAAAGCAGCAGCAGCAGCAGCAGCAGC
AGCAACAACAACAGCATGAGGTGGAGGAGGAGGGAGAGGGAATTGCGTCG
GCTTTGCGAGACCTGACGGCGGAGAAGAAGGCGTTGCAGCGGGAGGTGAG
ACGAGTTCAGGCAAGGCTGTATGAAACGGAGGAGGTGGTGGCGATGCAGG
AAGTGGTTATCAAGGGAGCGCTCTTTGGAGAAGACACAGGCCACGAAGGC
GGGAGCCAAGGAGGCCGTCGGCCTCATGCAGGGGAGGGAGGGCGTCAACG
CTTGTCCTCTGATTCGTGGATGGCGGACAACGGGCATGTGGATTCCCGGA
CTGTGCAACCAGAGGAGAACGAGCAACAGCAGCCGCGGCTAGAGGAAGAG
GAGCGAGGGACGTTGGAAGAAATTGCTGAGAAGCTAAAAGCAGATTTGAT
AGCATTTGGGATGGAGGACAAGCAACAAGACTCTGTTGGTGGTACTACTG
CTACTTTCGCTGCTTTGGAAGTTACGCCAATCAAGAAGATGGACGCCCAC
GGAGATGGGCAATGGAAGGTGACACGAGCTCCATTGCGGTCTCTGTCGGG
AGGTGGAGGCAACCTGTTATCGCCCATGCTGCAGGCGCGAATTGCGGGCT
TGGACCATGACATGTACAAGCCCAATAGGAACAAAGAAGAGGGTCTGGAT
GGTGGCACGCCGCGGGGACGGTCATCTTTGCAGGCGGCCTTGGGGTTGCT
CAGTCCGATAGAGCATCATGACCCTTTTGGGAATTGTCGCCACCCGGCTA
AAAAGACTCTTTAA

protein sequence of NO11G02270.1

>NO11G02270.1-protein ID=NO11G02270.1-protein|Name=NO11G02270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MEFFVPVGKSGSSQDDHEHHPTSSSRPTHQYQDDDSPPAATHSTADDKLA
WLQQNLGMHMLDGASGNLTGAELEAALTAMPHTLLPLLYKLTTQVRAFQE
QNTELMFDLKKNRAEAERLMQERASMYDKVDAAHQDRQAAESMLASMRAE
TAALEKRWSEEKNELHGRLARSTWKDLTIRAQLKKKDMEYEKLQKQLTRS
IGSSSGSKSTTGTARGTVNRVRSIDITPKPLVYSGGSSDLVGDEASRAAL
AACDHRQTLLLEENAELRETLRCMYAEIQGLQDQYGDLVEEVESCRIWYH
EELAKAKGAAGTSLLSPPLKGEEESIFSPQPTSRRFEVEAFEMPPEWLRR
VVGEELRANMAEMRRRYDRLREVIIKQQQQQQQQQQQQHEVEEEGEGIAS
ALRDLTAEKKALQREVRRVQARLYETEEVVAMQEVVIKGALFGEDTGHEG
GSQGGRRPHAGEGGRQRLSSDSWMADNGHVDSRTVQPEENEQQQPRLEEE
ERGTLEEIAEKLKADLIAFGMEDKQQDSVGGTTATFAALEVTPIKKMDAH
GDGQWKVTRAPLRSLSGGGGNLLSPMLQARIAGLDHDMYKPNRNKEEGLD
GGTPRGRSSLQAALGLLSPIEHHDPFGNCRHPAKKTL*

mRNA from alignment at chr11:733313..735226-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO11G02270.1 ID=NO11G02270.1|Name=NO11G02270.1|organism=Nannochloropsis oceanica|type=mRNA|length=1914bp|location=Sequence derived from alignment at chr11:733313..735226- (Nannochloropsis oceanica)
ATGGAGTTCTTTGTGCCAGTAGGGAAAAGCGGTAGCAGCCAAGACGACCA
TGAACATCATCCGACCAGCAGCAGCCGGCCCACACACCAATACCAGGACG
ACGACAGCCCACCTGCAGCCACACACAGTACAGCTGACGACAAGTTGGCA
TGGCTGCAACAGAATTTGGGGATGCATATGCTAGATGGTGCCAGTGGCAA
TCTCACTGGCGCCGAGCTCGAGGCCGCCCTGACGGCGATGCCCCACACTC
TCTTGCCCTTGCTGTACAAATTGACGACACAAGTGCGAGCATTTCAGGAG
CAAAATACGGAGCTCATGTTCGATCTGAAAAAGAATCGAGCTGAAGCGGA
GCGACTGATGCAAGAAAGGGCCAGTATGTACGACAAGGTGGATGCCGCCC
ATCAGGACCGACAAGCCGCCGAGAGCATGCTGGCCTCCATGCGGGCCGAG
ACCGCCGCCTTGGAAAAGCGATGGAGCGAGGAGAAGAATGAGCTCCATGG
GCGCTTGGCACGTTCAACTTGGAAAGACTTAACCATCCGCGCGCAGCTCA
AGAAGAAGGATATGGAGTACGAGAAGCTTCAGAAGCAATTGACGCGTAGC
ATCGGGTCGAGCAGCGGGAGCAAGAGTACCACCGGCACCGCGCGAGGCAC
GGTGAATCGCGTCCGAAGCATCGACATCACCCCCAAACCGTTGGTATACA
GCGGCGGCAGCAGTGACTTGGTGGGGGATGAGGCCTCTCGGGCGGCGTTG
GCGGCTTGCGACCACCGACAGACCTTGTTGTTGGAGGAGAATGCTGAGCT
TCGGGAGACCCTCAGGTGCATGTATGCAGAGATTCAGGGACTGCAAGATC
AATACGGCGATTTGGTTGAAGAAGTAGAGAGTTGTCGAATCTGGTACCAC
GAGGAGCTCGCCAAGGCGAAGGGGGCGGCAGGGACCTCGTTGCTTTCACC
ACCTCTAAAAGGAGAGGAGGAATCGATCTTTTCCCCTCAGCCGACGAGCC
GCCGATTCGAAGTGGAGGCATTTGAGATGCCTCCGGAGTGGTTGAGGCGT
GTGGTGGGAGAAGAGCTGCGGGCAAATATGGCTGAAATGCGTCGGCGATA
CGATAGACTGCGGGAGGTGATCATAAAGCAGCAGCAGCAGCAGCAGCAGC
AGCAACAACAACAGCATGAGGTGGAGGAGGAGGGAGAGGGAATTGCGTCG
GCTTTGCGAGACCTGACGGCGGAGAAGAAGGCGTTGCAGCGGGAGGTGAG
ACGAGTTCAGGCAAGGCTGTATGAAACGGAGGAGGTGGTGGCGATGCAGG
AAGTGGTTATCAAGGGAGCGCTCTTTGGAGAAGACACAGGCCACGAAGGC
GGGAGCCAAGGAGGCCGTCGGCCTCATGCAGGGGAGGGAGGGCGTCAACG
CTTGTCCTCTGATTCGTGGATGGCGGACAACGGGCATGTGGATTCCCGGA
CTGTGCAACCAGAGGAGAACGAGCAACAGCAGCCGCGGCTAGAGGAAGAG
GAGCGAGGGACGTTGGAAGAAATTGCTGAGAAGCTAAAAGCAGATTTGAT
AGCATTTGGGATGGAGGACAAGCAACAAGACTCTGTTGGTGGTACTACTG
CTACTTTCGCTGCTTTGGAAGTTACGCCAATCAAGAAGATGGACGCCCAC
GGAGATGGGCAATGGAAGGTGACACGAGCTCCATTGCGGTCTCTGTCGGG
AGGTGGAGGCAACCTGTTATCGCCCATGCTGCAGGCGCGAATTGCGGGCT
TGGACCATGACATGTACAAGCCCAATAGGAACAAAGAAGAGGGTCTGGAT
GGTGGCACGCCGCGGGGACGGTCATCTTTGCAGGCGGCCTTGGGGTTGCT
CAGTCCGATAGAGCATCATGACCCTTTTGGGAATTGTCGCCACCCGGCTA
AAAAGACTCTTTAA

Coding sequence (CDS) from alignment at chr11:733313..735226-

>NO11G02270.1 ID=NO11G02270.1|Name=NO11G02270.1|organism=Nannochloropsis oceanica|type=CDS|length=1914bp|location=Sequence derived from alignment at chr11:733313..735226- (Nannochloropsis oceanica)
ATGGAGTTCTTTGTGCCAGTAGGGAAAAGCGGTAGCAGCCAAGACGACCA
TGAACATCATCCGACCAGCAGCAGCCGGCCCACACACCAATACCAGGACG
ACGACAGCCCACCTGCAGCCACACACAGTACAGCTGACGACAAGTTGGCA
TGGCTGCAACAGAATTTGGGGATGCATATGCTAGATGGTGCCAGTGGCAA
TCTCACTGGCGCCGAGCTCGAGGCCGCCCTGACGGCGATGCCCCACACTC
TCTTGCCCTTGCTGTACAAATTGACGACACAAGTGCGAGCATTTCAGGAG
CAAAATACGGAGCTCATGTTCGATCTGAAAAAGAATCGAGCTGAAGCGGA
GCGACTGATGCAAGAAAGGGCCAGTATGTACGACAAGGTGGATGCCGCCC
ATCAGGACCGACAAGCCGCCGAGAGCATGCTGGCCTCCATGCGGGCCGAG
ACCGCCGCCTTGGAAAAGCGATGGAGCGAGGAGAAGAATGAGCTCCATGG
GCGCTTGGCACGTTCAACTTGGAAAGACTTAACCATCCGCGCGCAGCTCA
AGAAGAAGGATATGGAGTACGAGAAGCTTCAGAAGCAATTGACGCGTAGC
ATCGGGTCGAGCAGCGGGAGCAAGAGTACCACCGGCACCGCGCGAGGCAC
GGTGAATCGCGTCCGAAGCATCGACATCACCCCCAAACCGTTGGTATACA
GCGGCGGCAGCAGTGACTTGGTGGGGGATGAGGCCTCTCGGGCGGCGTTG
GCGGCTTGCGACCACCGACAGACCTTGTTGTTGGAGGAGAATGCTGAGCT
TCGGGAGACCCTCAGGTGCATGTATGCAGAGATTCAGGGACTGCAAGATC
AATACGGCGATTTGGTTGAAGAAGTAGAGAGTTGTCGAATCTGGTACCAC
GAGGAGCTCGCCAAGGCGAAGGGGGCGGCAGGGACCTCGTTGCTTTCACC
ACCTCTAAAAGGAGAGGAGGAATCGATCTTTTCCCCTCAGCCGACGAGCC
GCCGATTCGAAGTGGAGGCATTTGAGATGCCTCCGGAGTGGTTGAGGCGT
GTGGTGGGAGAAGAGCTGCGGGCAAATATGGCTGAAATGCGTCGGCGATA
CGATAGACTGCGGGAGGTGATCATAAAGCAGCAGCAGCAGCAGCAGCAGC
AGCAACAACAACAGCATGAGGTGGAGGAGGAGGGAGAGGGAATTGCGTCG
GCTTTGCGAGACCTGACGGCGGAGAAGAAGGCGTTGCAGCGGGAGGTGAG
ACGAGTTCAGGCAAGGCTGTATGAAACGGAGGAGGTGGTGGCGATGCAGG
AAGTGGTTATCAAGGGAGCGCTCTTTGGAGAAGACACAGGCCACGAAGGC
GGGAGCCAAGGAGGCCGTCGGCCTCATGCAGGGGAGGGAGGGCGTCAACG
CTTGTCCTCTGATTCGTGGATGGCGGACAACGGGCATGTGGATTCCCGGA
CTGTGCAACCAGAGGAGAACGAGCAACAGCAGCCGCGGCTAGAGGAAGAG
GAGCGAGGGACGTTGGAAGAAATTGCTGAGAAGCTAAAAGCAGATTTGAT
AGCATTTGGGATGGAGGACAAGCAACAAGACTCTGTTGGTGGTACTACTG
CTACTTTCGCTGCTTTGGAAGTTACGCCAATCAAGAAGATGGACGCCCAC
GGAGATGGGCAATGGAAGGTGACACGAGCTCCATTGCGGTCTCTGTCGGG
AGGTGGAGGCAACCTGTTATCGCCCATGCTGCAGGCGCGAATTGCGGGCT
TGGACCATGACATGTACAAGCCCAATAGGAACAAAGAAGAGGGTCTGGAT
GGTGGCACGCCGCGGGGACGGTCATCTTTGCAGGCGGCCTTGGGGTTGCT
CAGTCCGATAGAGCATCATGACCCTTTTGGGAATTGTCGCCACCCGGCTA
AAAAGACTCTTTAA

Synonyms

Publications