|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr11 | genome | chr11:730127..733068 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02260.1 vs.
Match: EWM24977.1 (chaperonin [Nannochloropsis gaditana]) HSP 1 Score: 1045.8 bits (2703), Expect = 5.000e-302 Identity = 554/592 (93.58%), Postives = 575/592 (97.13%), Query Frame = 0
Query: 1 MKWGVLGAIIATLAVGTTAFLPPAALPELASVRGAVSRRGAASTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELADPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIMHCSKVLCDTIKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAYELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVAGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTSSGYADAIKERILAIKREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKRDEMLAAMDDDDEKAGADIVFRSLSAPVMQIAQNAGIDGGIVVERIFENQEWGWGYNAATGVYENLLSTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFDGGGQYM 593
MK GV ++ATL V T+AFL PAALPEL+ R +RRG+ +TTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIEL+DPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGI H +K+LCDT+KQMAKPVESNKDLFDIATVATGGNAEMGAVIAKA+ELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDV+GEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVT+S YA+AIKERILAI+REMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKR+E+LA MDDDDEKAGADIVFRSLSAPVMQIA+NAGIDGGIVVERIFENQEWGWGYNAA+GVYENLL+TGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFDGGGQYM
Sbjct: 15 MKRGVSMVVMATLLVSTSAFLAPAALPELSKTRSVAARRGSLTTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFENQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFDGGGQYM 606
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02260.1 ID=NO11G02260.1|Name=NO11G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2840bp
GGAACTTGGCCACCATTTTCCTGTGCAAGAAGTAAGAACGGGAGGAGTTG
CACTAGGATGAGAGGGGGAAGGCCGGCAATGATCGTGCGGGGTCATGTAT
CGGCGGCCTGCGGGCCTTTCACTAAAGATGTAGATGGACCTGGCGTTATT
GTATCAGCAGTTATGAAGAGGATTTTCAAACACCGTAAAGAGTAGCAGAA
TGCTTGTGCTTGGTAGAGGGCGCGGCAGGCGAGCTGCCGTGACCGTAGAG
GCGAGCACACCAACCTCAAATCAGTTCCAGAAACTTGTGCATTTTTCTAT
ACCATACTTACCTCCAAAACCCGCAACTGTGACCACCCATTTATCCTCCA
TCATCTCTTGGTTGTATCTGGGTGGTCTGGGTTTGCTCGAAGGCTGTGTA
TTTGAGTTGGCATGCTTTTGCTTAACTAGAGACGTAAGATACTCCCTCTC
TGTGTTGATGGACGAATGGCCTGCCTTGCGCACTGCAACTTGGCCTGATC
CACCATACATACATGCCGGCTACACAGACGACTGCCCTGAGGAGAAGCCA
ATGTATGTTTACAGTCGACTGCTGGCTTTTGCGGCGATGGGAGTGCACGG
TGCCATGTGCTATAGCCTCCCCACCAAAAGCTTGCCCCTAGCCGCTTATC
GTGCGACTGACCATCCCTTTCCATCCTTTCCACCCCGCGACCACCCACGA
CAGACTTCAGGAACATGAAGTGGGGCGTCCTTGGAGCAATCATAGCCACC
CTGGCCGTGGGCACGACTGCTTTTCTGCCGCCTGCGGCCCTTCCCGAGCT
GGCCAGCGTACGCGGTGCTGTGTCTAGACGGGGCGCGGCATCCACGACCA
TGATGGCCAAGAATGTGCGCCTGAGCGAGAAGAGCCGCCAGAAGCTGGTG
GAGGGGATCAACATTGTGGCTAATGCTGTCAAGGTAACCCTGGGACCGAA
GGGCCGCAACGTGGTGTTGGAACGCAAGTACGGTGTGCCTGAGATTGTGA
ACGATGGTGTGACGATTGCCCGTGATATTGAGCTGGCAGACCCTGAGCAG
AATGTAGGGGTGAAGCTCGTGCAGGAGGTCGCTACCAAGTCCGACATGAA
AGCCGGCGATGGTACCACAACCTCCACCGTAATGACCCAAGCCATCGTCA
ACCAAGGTATGCGCCAGGTGACGGCAGGTGCAAACCCCGTGGCTCTGCGC
AGGGGTATCATGCACTGCTCTAAGGTTCTGTGTGACACGATCAAACAGAT
GGCGAAGCCCGTGGAGAGCAATAAGGACCTTTTCGATATCGCCACTGTTG
CCACGGGCGGCAACGCGGAGATGGGGGCAGTGATTGCCAAGGCTTATGAG
TTGGTGGGCGACAGCGGCTCGACAGTCGTGGAGGAGTCTCAGACTGTGCA
AGACGAGGTGGAGTTCACGGAAGGGTTGAGCATCGATCGTGGATACGTCT
CTCCTTACTTCGTCAAGGACCAAGAGCGACAGCTGGTAGAGCTGCGTAAG
CCCCGCGTGCTTGTCACCGAGGGGAAGATTTCGGCGGTCCATGAGATTTT
GCCTTTGCTCGAACACATCGCCAAGAGCAAGGAGCCGCTGTTCATTGTCG
CTGAGGACGTTGCCGGGGAGGCTTTGAGCGCGCTGGTGGTGAACAAAATG
CGTGGAGTGCTTGACGTGGTGGCTATCAAAGCACCTGGCTTCGGAGACCG
ACGCAAACAGCTGTTGCAGGATATTGCCGTTGCCACGGGTGCCACCTTCG
TTGCGGAGGAGGTGGGCGTGACACTTGAAAGTGTGACGCCGGAGATGCTG
GGTGTGGCGGAGAAGGTGGTAGTTGGGAAGGACACCACGACCATTGTCAC
CAGCAGTGGATATGCTGATGCTATCAAGGAGAGGATTCTGGCGATTAAGC
GCGAGATGGACTTGATGGACTCGAAGTTCGATAAGGAGAAGGCGCAGCAA
CGTGTGGCGGCTTTAGGGGGGGGGATCGCTCGAATTAAGGTGGGGGCGGC
AACTGAGACGGAGCTGAAGGATAAGAAGCTCAGGTATGAGGACGCATTAA
ACTCGGTGAAGAGTGCGATTGAGATGGGTGTTGTGCCGGGGGGAGGGTCG
ACTCTGCTGTATATGCTTAAGAAGAGGGATGAAATGTTGGCTGCCATGGA
CGATGATGACGAGAAGGCGGGTGCCGACATTGTGTTCCGCTCTTTGTCGG
CGCCCGTGATGCAGATTGCGCAAAATGCTGGCATCGATGGTGGGATTGTG
GTGGAGCGTATTTTCGAGAACCAAGAGTGGGGATGGGGCTACAACGCCGC
TACCGGCGTTTATGAGAACTTGTTGAGCACGGGCGTGGTGGACTCGGCGA
AGGTCGTGATTAATGCGTTGGAAAACTCGGCGTCGATTGCTTCGATGGTG
CTGACGACCGAGTGTTTGATTACTGAGATCCCGGAAAGGAAATCGTTAGA
CCAGGCGGCCCAGGATTTTGATGGCGGAGGACAGTACATGTAAGGAAGTG
TCGAGGCCGAGAGGAAGGGGGGAAATAAGGGAGAGAAAGGAAAGGCTGGC
TGGCTAGAGAGGATTATTTGAGATGATGGAGAGAGTGGGTACGAGGGAAG
AGAGGAAGGGAGGGAGGGGTCATGTGCGTGGGTTGAGCGATCTGCTGTGC
GGCGTCACAGACTGGTGGCAGGCATTGCGGTTGTGTGGCTGGTGCACAAT
AGGGCTCGATAGGATTAATAGCAAGGCAGGGAGGGTTAAGCTACCAACAT
AAAACGAGGGGGAAAGATGACATACCACACTGGAACCCCACCCTGCTCTC
TGCAGCACAAAGAAACAAGCCAAAAGACAGCGGAAATGCC back to topprotein sequence of NO11G02260.1 >NO11G02260.1-protein ID=NO11G02260.1-protein|Name=NO11G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=593bp
MKWGVLGAIIATLAVGTTAFLPPAALPELASVRGAVSRRGAASTTMMAKN
VRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVT
IARDIELADPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMR
QVTAGANPVALRRGIMHCSKVLCDTIKQMAKPVESNKDLFDIATVATGGN
AEMGAVIAKAYELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFV
KDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVA
GEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEV
GVTLESVTPEMLGVAEKVVVGKDTTTIVTSSGYADAIKERILAIKREMDL
MDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKS
AIEMGVVPGGGSTLLYMLKKRDEMLAAMDDDDEKAGADIVFRSLSAPVMQ
IAQNAGIDGGIVVERIFENQEWGWGYNAATGVYENLLSTGVVDSAKVVIN
ALENSASIASMVLTTECLITEIPERKSLDQAAQDFDGGGQYM* back to topmRNA from alignment at chr11:730127..733068+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02260.1 ID=NO11G02260.1|Name=NO11G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=2942bp|location=Sequence derived from alignment at chr11:730127..733068+ (Nannochloropsis oceanica)
GGAACTTGGCCACCATTTTCCTGTGCAAGAAGTAAGAACGGGAGGAGTTG
CACTAGGATGAGAGGGGGAAGGCCGGCAATGATCGTGCGGGGTCATGTAT
CGGCGGCCTGCGGGCCTTTCACTAAAGATGTAGATGGACCTGGCGTTATT
GTATCAGCAGTTATGAAGAGGATTTTCAAACACCGTAAAGAGTAGCAGAA
TGCTTGTGCTTGGTAGAGGGCGCGGCAGGCGAGCTGCCGTGACCGTAGAG
GCGAGCACACCAACCTCAAATCAGTTCCAGAAACTTGTGCATTTTTCTAT
ACCATACTTACCTCCAAAACCCGCAACTGTGACCACCCATTTATCCTCCA
TCATCTCTTGGTTGTATCTGGGTGGTCTGGGTTTGCTCGAAGGCTGTGTA
TTTGAGTTGGCATGCTTTTGCTTAACTAGAGACGTAAGATACTCCCTCTC
TGTGTTGATGGACGAATGGCCTGCCTTGCGCACTGCAACTTGGCCTGATC
CACCATACATACATGCCGGCTACACAGACGACTGCCCTGAGGAGAAGCCA
ATGTATGTTTACAGTCGACTGCTGGCTTTTGCGGCGATGGGAGTGCACGG
TGCCATGTGCTATAGCCTCCCCACCAAAAGCTTGCCCCTAGCCGCTTATC
GTGCGACTGACCATCCCTTTCCATCCTTTCCACCCCGCGACCACCCACGA
CAGACTTCAGGAACATGAAGTGGGGCGTCCTTGGAGCAATCATAGCCACC
CTGGCCGTGGGCACGACTGCTTTTCTGCCGCCTGGTAAGATATCGAATTG
TTTCTCCTCTTCCTCACTCTCAACCTAGGTTTTCCAGAAAAAATTAACGC
CCCATACCCCGTCAACCATCCCCCCCCCCCTTACAGCGGCCCTTCCCGAG
CTGGCCAGCGTACGCGGTGCTGTGTCTAGACGGGGCGCGGCATCCACGAC
CATGATGGCCAAGAATGTGCGCCTGAGCGAGAAGAGCCGCCAGAAGCTGG
TGGAGGGGATCAACATTGTGGCTAATGCTGTCAAGGTAACCCTGGGACCG
AAGGGCCGCAACGTGGTGTTGGAACGCAAGTACGGTGTGCCTGAGATTGT
GAACGATGGTGTGACGATTGCCCGTGATATTGAGCTGGCAGACCCTGAGC
AGAATGTAGGGGTGAAGCTCGTGCAGGAGGTCGCTACCAAGTCCGACATG
AAAGCCGGCGATGGTACCACAACCTCCACCGTAATGACCCAAGCCATCGT
CAACCAAGGTATGCGCCAGGTGACGGCAGGTGCAAACCCCGTGGCTCTGC
GCAGGGGTATCATGCACTGCTCTAAGGTTCTGTGTGACACGATCAAACAG
ATGGCGAAGCCCGTGGAGAGCAATAAGGACCTTTTCGATATCGCCACTGT
TGCCACGGGCGGCAACGCGGAGATGGGGGCAGTGATTGCCAAGGCTTATG
AGTTGGTGGGCGACAGCGGCTCGACAGTCGTGGAGGAGTCTCAGACTGTG
CAAGACGAGGTGGAGTTCACGGAAGGGTTGAGCATCGATCGTGGATACGT
CTCTCCTTACTTCGTCAAGGACCAAGAGCGACAGCTGGTAGAGCTGCGTA
AGCCCCGCGTGCTTGTCACCGAGGGGAAGATTTCGGCGGTCCATGAGATT
TTGCCTTTGCTCGAACACATCGCCAAGAGCAAGGAGCCGCTGTTCATTGT
CGCTGAGGACGTTGCCGGGGAGGCTTTGAGCGCGCTGGTGGTGAACAAAA
TGCGTGGAGTGCTTGACGTGGTGGCTATCAAAGCACCTGGCTTCGGAGAC
CGACGCAAACAGCTGTTGCAGGATATTGCCGTTGCCACGGGTGCCACCTT
CGTTGCGGAGGAGGTGGGCGTGACACTTGAAAGTGTGACGCCGGAGATGC
TGGGTGTGGCGGAGAAGGTGGTAGTTGGGAAGGACACCACGACCATTGTC
ACCAGCAGTGGATATGCTGATGCTATCAAGGAGAGGATTCTGGCGATTAA
GCGCGAGATGGACTTGATGGACTCGAAGTTCGATAAGGAGAAGGCGCAGC
AACGTGTGGCGGCTTTAGGGGGGGGGATCGCTCGAATTAAGGTGGGGGCG
GCAACTGAGACGGAGCTGAAGGATAAGAAGCTCAGGTATGAGGACGCATT
AAACTCGGTGAAGAGTGCGATTGAGATGGGTGTTGTGCCGGGGGGAGGGT
CGACTCTGCTGTATATGCTTAAGAAGAGGGATGAAATGTTGGCTGCCATG
GACGATGATGACGAGAAGGCGGGTGCCGACATTGTGTTCCGCTCTTTGTC
GGCGCCCGTGATGCAGATTGCGCAAAATGCTGGCATCGATGGTGGGATTG
TGGTGGAGCGTATTTTCGAGAACCAAGAGTGGGGATGGGGCTACAACGCC
GCTACCGGCGTTTATGAGAACTTGTTGAGCACGGGCGTGGTGGACTCGGC
GAAGGTCGTGATTAATGCGTTGGAAAACTCGGCGTCGATTGCTTCGATGG
TGCTGACGACCGAGTGTTTGATTACTGAGATCCCGGAAAGGAAATCGTTA
GACCAGGCGGCCCAGGATTTTGATGGCGGAGGACAGTACATGTAAGGAAG
TGTCGAGGCCGAGAGGAAGGGGGGAAATAAGGGAGAGAAAGGAAAGGCTG
GCTGGCTAGAGAGGATTATTTGAGATGATGGAGAGAGTGGGTACGAGGGA
AGAGAGGAAGGGAGGGAGGGGTCATGTGCGTGGGTTGAGCGATCTGCTGT
GCGGCGTCACAGACTGGTGGCAGGCATTGCGGTTGTGTGGCTGGTGCACA
ATAGGGCTCGATAGGATTAATAGCAAGGCAGGGAGGGTTAAGCTACCAAC
ATAAAACGAGGGGGAAAGATGACATACCACACTGGAACCCCACCCTGCTC
TCTGCAGCACAAAGAAACAAGCCAAAAGACAGCGGAAATGCC back to topCoding sequence (CDS) from alignment at chr11:730127..733068+ >NO11G02260.1 ID=NO11G02260.1|Name=NO11G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=1779bp|location=Sequence derived from alignment at chr11:730127..733068+ (Nannochloropsis oceanica)
ATGAAGTGGGGCGTCCTTGGAGCAATCATAGCCACCCTGGCCGTGGGCAC
GACTGCTTTTCTGCCGCCTGCGGCCCTTCCCGAGCTGGCCAGCGTACGCG
GTGCTGTGTCTAGACGGGGCGCGGCATCCACGACCATGATGGCCAAGAAT
GTGCGCCTGAGCGAGAAGAGCCGCCAGAAGCTGGTGGAGGGGATCAACAT
TGTGGCTAATGCTGTCAAGGTAACCCTGGGACCGAAGGGCCGCAACGTGG
TGTTGGAACGCAAGTACGGTGTGCCTGAGATTGTGAACGATGGTGTGACG
ATTGCCCGTGATATTGAGCTGGCAGACCCTGAGCAGAATGTAGGGGTGAA
GCTCGTGCAGGAGGTCGCTACCAAGTCCGACATGAAAGCCGGCGATGGTA
CCACAACCTCCACCGTAATGACCCAAGCCATCGTCAACCAAGGTATGCGC
CAGGTGACGGCAGGTGCAAACCCCGTGGCTCTGCGCAGGGGTATCATGCA
CTGCTCTAAGGTTCTGTGTGACACGATCAAACAGATGGCGAAGCCCGTGG
AGAGCAATAAGGACCTTTTCGATATCGCCACTGTTGCCACGGGCGGCAAC
GCGGAGATGGGGGCAGTGATTGCCAAGGCTTATGAGTTGGTGGGCGACAG
CGGCTCGACAGTCGTGGAGGAGTCTCAGACTGTGCAAGACGAGGTGGAGT
TCACGGAAGGGTTGAGCATCGATCGTGGATACGTCTCTCCTTACTTCGTC
AAGGACCAAGAGCGACAGCTGGTAGAGCTGCGTAAGCCCCGCGTGCTTGT
CACCGAGGGGAAGATTTCGGCGGTCCATGAGATTTTGCCTTTGCTCGAAC
ACATCGCCAAGAGCAAGGAGCCGCTGTTCATTGTCGCTGAGGACGTTGCC
GGGGAGGCTTTGAGCGCGCTGGTGGTGAACAAAATGCGTGGAGTGCTTGA
CGTGGTGGCTATCAAAGCACCTGGCTTCGGAGACCGACGCAAACAGCTGT
TGCAGGATATTGCCGTTGCCACGGGTGCCACCTTCGTTGCGGAGGAGGTG
GGCGTGACACTTGAAAGTGTGACGCCGGAGATGCTGGGTGTGGCGGAGAA
GGTGGTAGTTGGGAAGGACACCACGACCATTGTCACCAGCAGTGGATATG
CTGATGCTATCAAGGAGAGGATTCTGGCGATTAAGCGCGAGATGGACTTG
ATGGACTCGAAGTTCGATAAGGAGAAGGCGCAGCAACGTGTGGCGGCTTT
AGGGGGGGGGATCGCTCGAATTAAGGTGGGGGCGGCAACTGAGACGGAGC
TGAAGGATAAGAAGCTCAGGTATGAGGACGCATTAAACTCGGTGAAGAGT
GCGATTGAGATGGGTGTTGTGCCGGGGGGAGGGTCGACTCTGCTGTATAT
GCTTAAGAAGAGGGATGAAATGTTGGCTGCCATGGACGATGATGACGAGA
AGGCGGGTGCCGACATTGTGTTCCGCTCTTTGTCGGCGCCCGTGATGCAG
ATTGCGCAAAATGCTGGCATCGATGGTGGGATTGTGGTGGAGCGTATTTT
CGAGAACCAAGAGTGGGGATGGGGCTACAACGCCGCTACCGGCGTTTATG
AGAACTTGTTGAGCACGGGCGTGGTGGACTCGGCGAAGGTCGTGATTAAT
GCGTTGGAAAACTCGGCGTCGATTGCTTCGATGGTGCTGACGACCGAGTG
TTTGATTACTGAGATCCCGGAAAGGAAATCGTTAGACCAGGCGGCCCAGG
ATTTTGATGGCGGAGGACAGTACATGTAA back to top
|