NO11G02250.1, NO11G02250.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02250.1
Unique NameNO11G02250.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1907
Alignment locationchr11:728380..730851 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:728380..730851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02250.1 vs.
Match: EWM24988.1 (20 kda chaperonin [Nannochloropsis gaditana])

HSP 1 Score: 395.6 bits (1015), Expect = 1.200e-106
Identity = 199/253 (78.66%), Postives = 220/253 (86.96%), Query Frame = 0 
Query:    1 MVAKFPMRTCLLASLPLLLQAFLLSS-PQRQTAFSYSHRSAKTITQVHNLDGVDIPGPLNPLANVLLVKVKDAADMSAGGIVLPDQAKEKPTEGEVISAGPGRLHPETAVLMPMPVKPGDKVLYGKFDGMSVAYDGAPHVLIRDEDILLTWTGPKMTVAAVETVRDRILVKVKKAQDKSAGGILLAPSMSKARPTEGEVIKVGPGRIASNGQVADIKIKAGDSVKFKDFAGTEVKLEDENYLVMYSVDVLARW 253
            M A   +R C+   LP LL AF+L   P ++T+FS      KT+T+ HNLDG +IPGPL PLANVLLVKVKDA DMSAGGIVLPDQAKEKPTEGEV++AGPGR HPETAVLMPMPVKPG KVLYGKFDGMSV YDGAPHVLIRD+DILLTWTG  MT+ AVETVRDRILVKVKKAQ+KSAGGILLAPSM+KARPTEGEVIKVGPGRIAS G+VAD+K+K GD VKFKDFAGTE+K++DENYLVMYSVDVLARW
Sbjct:    1 MPAALALRACVFVCLPFLLGAFVLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
The following BLAST results are available for this feature:
BLAST of NO11G02250.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24988.11.200e-10678.6620 kda chaperonin [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02250NO11G02250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02250.1NO11G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02250.1.cds1NO11G02250.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02250.1.cds2NO11G02250.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02250.1.cds3NO11G02250.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02250.1.cds4NO11G02250.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02250.1 ID=NO11G02250.1|Name=NO11G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1907bp
CCCCACTTCATGTTCCTGAAGTCTGTCGTGGGTGGTCGCGGGGTGGAAAG
GATGGAAAGGGATGGTCAGTCGCACGATAAGCGGCTAGGGGCAAGCTTTT
GGTGGGGAGGCTATAGCACATGGCACCGTGCACTCCCATCGCCGCAAAAG
CCAGCAGTCGACTGTAAACATACATTGGCTTCTCCTCAGGGCAGTCGTCT
GTGTAGCCGGCATGTATGTATGGTGGATCAGGCCAAGTTGCAGTGCGCAA
GGCAGGCCATTCGTCCATCAACACAGAGAGGGAGTATCTTACGTCTCTAG
TTAAGCAAAAGCATGCCAACTCAAATACACAGCCTTCGAGCAAACCCAGA
CCACCCAGATACAACCAAGAGATGATGGAGGATAAATGGGTGGTCACAGT
TGCGGGTTTTGGAGGTAAGTATGGTATAGAAAAATGCACAAGTTTCTGGA
ACTGATTTGAGGTTGGTGTGCTCGCCTCTACGGTCACGGCAGCTCGCCTG
CCGCGCCCTCTACCAAGCACAAGCATTCTGCTACTCTTTACGGTGTTTGA
AAATCCTCTTCATAACTGCTGATACAATAACGCCAGGTCCATCTACATCT
TTAGTGAAAGGCCCGCAGGCCGCCGATACATGACCCCGCACGATCATTGC
CGGCCTTCCCCCTCTCATCCTAGTGCAACTCCTCCCGTTCTTACTTCTTG
CACAGGAAAATGGTGGCCAAGTTCCCCATGCGCACCTGTCTGCTGGCAAG
TCTGCCCCTTCTCCTCCAGGCTTTCTTGCTTTCTTCACCTCAGAGACAAA
CGGCCTTCTCCTACTCCCACCGTAGCGCCAAGACCATCACCCAAGTGCAC
AACCTTGACGGCGTGGACATCCCTGGCCCTTTGAACCCCCTGGCCAACGT
GCTGCTTGTCAAAGTCAAGGATGCCGCCGACATGTCTGCTGGAGGCATTG
TGCTGCCCGATCAGGCCAAGGAGAAGCCCACCGAAGGCGAAGTTATTTCA
GCAGGTCCAGGGCGATTGCACCCGGAGACGGCTGTCCTTATGCCTATGCC
CGTCAAGCCTGGCGACAAAGTCCTCTATGGAAAATTTGACGGCATGTCCG
TCGCCTACGACGGAGCCCCCCACGTGCTGATCCGCGATGAGGACATCTTG
CTTACCTGGACTGGGCCTAAAATGACTGTTGCTGCTGTTGAGACTGTCCG
TGACCGCATCCTAGTTAAGGTCAAGAAGGCACAAGATAAGAGCGCAGGTG
GAATCTTGTTGGCCCCCTCCATGAGCAAGGCACGGCCGACGGAGGGGGAG
GTTATTAAGGTCGGCCCGGGTAGGATTGCGTCAAATGGGCAGGTTGCTGA
CATCAAGATTAAGGCAGGAGATAGTGTGAAATTTAAGGACTTTGCGGGCA
CGGAGGTGAAATTGGAGGATGAGAATTACTTGGTCATGTACTCAGTTGAT
GTGTTGGCGCGTTGGTAAGCGTGAGGTCGAGGGAGGGGGGAATGAGGGAG
GCACATAATATTGAAAGTGGGGGGGGGAGGGGAGAATAATGCTCTAATGT
TGCCTGTGTGCACATGATGAGGGAGCATAGAGTTGGATGATGGGATTGAA
ATGGAAGGGAGAGGGGGAGCAGGAAACGATGCAGGCCCCGCAGCATTTCC
GAGTCGTTCTCGTCGATTTTACATTGGATCAAAGCAAAAACAGGCTTGCA
CCGAGAGCCGACAACCCAATCAATCAAGGAAGCAAGCAACAAAACATTAC
CACCGATTAAAAAACAGCACGAACAACCAGAACGAAAAGAAAACACAACA
GACGATGTTTTATCGATGGTGGGCACTCGCCATGCTCTGCTTGCTTATTT
CAATCGATCGACAAGGGGAAAACCGCGGGCGACCTTTGACTGTTGCCGAG
ATCGGAC
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protein sequence of NO11G02250.1

>NO11G02250.1-protein ID=NO11G02250.1-protein|Name=NO11G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MVAKFPMRTCLLASLPLLLQAFLLSSPQRQTAFSYSHRSAKTITQVHNLD
GVDIPGPLNPLANVLLVKVKDAADMSAGGIVLPDQAKEKPTEGEVISAGP
GRLHPETAVLMPMPVKPGDKVLYGKFDGMSVAYDGAPHVLIRDEDILLTW
TGPKMTVAAVETVRDRILVKVKKAQDKSAGGILLAPSMSKARPTEGEVIK
VGPGRIASNGQVADIKIKAGDSVKFKDFAGTEVKLEDENYLVMYSVDVLA
RW*
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mRNA from alignment at chr11:728380..730851-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02250.1 ID=NO11G02250.1|Name=NO11G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp|location=Sequence derived from alignment at chr11:728380..730851- (Nannochloropsis oceanica)
CCCCACTTCATGTTCCTGAAGTCTGTCGTGGGTGGTCGCGGGGTGGAAAG
GATGGAAAGGGATGGTCAGTCGCACGATAAGCGGCTAGGGGCAAGCTTTT
GGTGGGGAGGCTATAGCACATGGCACCGTGCACTCCCATCGCCGCAAAAG
CCAGCAGTCGACTGTAAACATACATTGGCTTCTCCTCAGGGCAGTCGTCT
GTGTAGCCGGCATGTATGTATGGTGGATCAGGCCAAGTTGCAGTGCGCAA
GGCAGGCCATTCGTCCATCAACACAGAGAGGGAGTATCTTACGTCTCTAG
TTAAGCAAAAGCATGCCAACTCAAATACACAGCCTTCGAGCAAACCCAGA
CCACCCAGATACAACCAAGAGATGATGGAGGATAAATGGGTGGTCACAGT
TGCGGGTTTTGGAGGTAAGTATGGTATAGAAAAATGCACAAGTTTCTGGA
ACTGATTTGAGGTTGGTGTGCTCGCCTCTACGGTCACGGCAGCTCGCCTG
CCGCGCCCTCTACCAAGCACAAGCATTCTGCTACTCTTTACGGTGTTTGA
AAATCCTCTTCATAACTGCTGATACAATAACGCCAGGTCCATCTACATCT
TTAGTGAAAGGCCCGCAGGCCGCCGATACATGACCCCGCACGATCATTGC
CGGCCTTCCCCCTCTCATCCTAGTGCAACTCCTCCCGTTCTTACTTCTTG
CACAGGAAAATGGTGGCCAAGTTCCCCATGCGCACCTGTCTGCTGGCAAG
TCTGCCCCTTCTCCTCCAGGCTTTCTTGCTTTCTTCACCTCAGAGACAAA
CGGCCTTCTCCTACTCCCACCGTAGCGCCAAGACCATCACCCAAGGTACG
CAGATACGATCGAAATGGAAAGGAGGAACGCTGAATCCTTGCATGTTGTC
TGTATGCTTACATACTTATTAGCCTGACCTGACCTTTTCACATAATTCAA
AGTGCACAACCTTGACGGCGTGGACATCCCTGGCCCTTTGAACCCCCTGG
CCAACGTGCTGCTTGTCAAAGTCAAGGATGCCGCCGACATGTCTGCTGGA
GGCATTGTGCTGCCCGATCAGGTACATATATACATAATCACATTGATTTA
TAACTGGAGATAGGTATTGAAATCTGGGTAGGACAACAAATTGTACGAAG
GGCTCGTGGCATGCGGTCTAAGACCTGTCTGTTTCCCGCAGCCCCTTACC
ACCTCCATCCGCCTTATCTTCTTCCTTTCCTCCTTCCCAACCGAATTCAA
TAAACCCCTCATTCAGGCCAAGGAGAAGCCCACCGAAGGCGAAGTTATTT
CAGCAGGTCCAGGGCGATTGCACCCGGAGACGGCTGTCCTTATGCCTATG
CCCGTCAAGCCTGGTACGTAAATTAAATTGTTTTAGTGCAGGTGCTGGAT
TGCTTGAAGAGATGAAGTTTGAAAGGGATGATATTGTTGAAGAATGGGAG
GAGGCAGCAGGTGTCAGATTATTTGTTAAGTGTTCGTTTCCTCGTGTGTT
TTGTTTTATGTCTGCACGCGGCAAATTTTAAAGATTGAAAAGGAGGAGAG
ACAGCTCTACTTACCCCCTTAAAATCAACACCTACCCTTGTTCCCTCACT
TCCCCCCCTCCACCTCCAATCACCAGGCGACAAAGTCCTCTATGGAAAAT
TTGACGGCATGTCCGTCGCCTACGACGGAGCCCCCCACGTGCTGATCCGC
GATGAGGACATCTTGCTTACCTGGACTGGGCCTAAAATGACTGTTGCTGC
TGTTGAGACTGTCCGTGACCGCATCCTAGTTAAGGTCAAGAAGGCACAAG
ATAAGAGCGCAGGTGGAATCTTGTTGGCCCCCTCCATGAGCAAGGCACGG
CCGACGGAGGGGGAGGTTATTAAGGTCGGCCCGGGTAGGATTGCGTCAAA
TGGGCAGGTTGCTGACATCAAGATTAAGGCAGGAGATAGTGTGAAATTTA
AGGACTTTGCGGGCACGGAGGTGAAATTGGAGGATGAGAATTACTTGGTC
ATGTACTCAGTTGATGTGTTGGCGCGTTGGTAAGCGTGAGGTCGAGGGAG
GGGGGAATGAGGGAGGCACATAATATTGAAAGTGGGGGGGGGAGGGGAGA
ATAATGCTCTAATGTTGCCTGTGTGCACATGATGAGGGAGCATAGAGTTG
GATGATGGGATTGAAATGGAAGGGAGAGGGGGAGCAGGAAACGATGCAGG
CCCCGCAGCATTTCCGAGTCGTTCTCGTCGATTTTACATTGGATCAAAGC
AAAAACAGGCTTGCACCGAGAGCCGACAACCCAATCAATCAAGGAAGCAA
GCAACAAAACATTACCACCGATTAAAAAACAGCACGAACAACCAGAACGA
AAAGAAAACACAACAGACGATGTTTTATCGATGGTGGGCACTCGCCATGC
TCTGCTTGCTTATTTCAATCGATCGACAAGGGGAAAACCGCGGGCGACCT
TTGACTGTTGCCGAGATCGGAC
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Coding sequence (CDS) from alignment at chr11:728380..730851-

>NO11G02250.1 ID=NO11G02250.1|Name=NO11G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr11:728380..730851- (Nannochloropsis oceanica)
ATGGTGGCCAAGTTCCCCATGCGCACCTGTCTGCTGGCAAGTCTGCCCCT
TCTCCTCCAGGCTTTCTTGCTTTCTTCACCTCAGAGACAAACGGCCTTCT
CCTACTCCCACCGTAGCGCCAAGACCATCACCCAAGTGCACAACCTTGAC
GGCGTGGACATCCCTGGCCCTTTGAACCCCCTGGCCAACGTGCTGCTTGT
CAAAGTCAAGGATGCCGCCGACATGTCTGCTGGAGGCATTGTGCTGCCCG
ATCAGGCCAAGGAGAAGCCCACCGAAGGCGAAGTTATTTCAGCAGGTCCA
GGGCGATTGCACCCGGAGACGGCTGTCCTTATGCCTATGCCCGTCAAGCC
TGGCGACAAAGTCCTCTATGGAAAATTTGACGGCATGTCCGTCGCCTACG
ACGGAGCCCCCCACGTGCTGATCCGCGATGAGGACATCTTGCTTACCTGG
ACTGGGCCTAAAATGACTGTTGCTGCTGTTGAGACTGTCCGTGACCGCAT
CCTAGTTAAGGTCAAGAAGGCACAAGATAAGAGCGCAGGTGGAATCTTGT
TGGCCCCCTCCATGAGCAAGGCACGGCCGACGGAGGGGGAGGTTATTAAG
GTCGGCCCGGGTAGGATTGCGTCAAATGGGCAGGTTGCTGACATCAAGAT
TAAGGCAGGAGATAGTGTGAAATTTAAGGACTTTGCGGGCACGGAGGTGA
AATTGGAGGATGAGAATTACTTGGTCATGTACTCAGTTGATGTGTTGGCG
CGTTGGTAA
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Synonyms
Publications