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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:712271..714200 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02210.2 vs.
Match: EWM24978.1 (eukaryotic translation initiation factor iso4e [Nannochloropsis gaditana]) HSP 1 Score: 292.7 bits (748), Expect = 7.000e-76 Identity = 143/165 (86.67%), Postives = 149/165 (90.30%), Query Frame = 0
Query: 1 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLGLQADYYLFKDGVRPSYEENPTGGVWTFNLEKNNKKKLEETWLHLVLGMIGETMEDGNDILGAVVSIKRGQDRLSLWTKTAADKELQVQIARRVKTSLDLPEGTMLEFKPNQKVAEVGGRMSSATDVKTYAV 166
MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRL +QADYYLFK+GVRPSYEENP GGVW FNLEK NKK+LEE WL+LVLG+IGETMED NDILGAVVSIKRGQDRLSLWTKTAADKELQV+IA RVK SLDLP T LEFKPNQKVAE GG MSSA DVK Y V
Sbjct: 113 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 277
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02210.2 ID=NO11G02210.2|Name=NO11G02210.2|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp TGCGTCCGATGTCATGGTTATCTGCATGGATGTGCAGGGATGGGGAAGAG GATGGGGATAGGGAATGAGTGAGAGTGAAGTGTGAAGCGGGTTTGCTGAG TGTGGGTTTTGCGGAAGCAATGTCATCCGCTGAGATGGGGAAAGAGGCCC AATCAATCATCCTGTGCTGTGCCTGTTGTGTGAGAGGGACAAGGCCGGCT TGTGCTACCGGACAAAGCGGATCTGAGGTGGCAAGGAGGAGAAACGCTTA GGGAGAGACTCTGTCTTTTCCGTGTGATGATGGTGGGTGCTGTTGCTCGG GGACTTGAAAGCCATCGAGACATGCACGTTGAGGAAAAAAGACTGAACAC TCTGAACCGGTAAGGGATGTCCTGGTTTCGGCATGCGACTGGGATGATAT GCTCGCACGCATGTTACACCGTAGTGAAGGACAGAAAAAGAAGCGAAGCA CGGCACTGGCTTGGACGAAGAGGATCAGCCTGCTGAGCGGTTGCGAATGA CAACCATCAGGTGATATCCTTCGCGCCCTAGGAGCACAGCACCGCCGCAC AAACAAATGAGGACAAGGTTCAGCTGATAATTGTAATCTCGTGGCTACAA CGGGGCTATGCTGAACTCAACGCGCTTTTTACTCTGTGCGACCCACCCTT TAATTTAGCCTCCCCCCACTCCTGTAGTTACTCCCTGCATCTGCAAGACC CACAGCGCCCACAACCCCACTTGATGAGAACCACGCCCTTGGTTAAGAAC AACATGGCCTCCAACAACACCAACAACACGAGCAGCAGCGGCAGCAACGA CAGCGGGAACAAGTCGGCGGAGGGCGGAGCAGGCAAGGTAAGTCCTGAGG TTGCGACAGGGTTATGGACGGTGGACCATATTGAAGGGGAGAGTTCATCC GGCTCTACTCACCCCCGCATCTGCACGCTGCGCTTGCGTATATTTCATGC GATGGCAAGTTAGGAAACTGTGTAGGTGGGCGCTGTGCATCAATTTTGCG TGTCATCGAGGATCGACTTACCTTTATTCCTCCCTCCCTTTCCTTCCCTC CCACATCACAGCACAAGCTACAAAATCGCTGGTCTTTTTTCTACAACAAC CCCAAAGCCAACCCCATGCTGTCCTGGGAAGAAAAGCTACAGAAAATTTA TACCTTTGAGACGGTGGAAGATTTTTGGGCTCTTTTTAATTCGGTCGTGG GTCCGTCTAGGTTAGGACTGCAGGCTGATTACTATTTGTTTAAGGATGGA GTGAGGCCTTCATATGAGGAGAATCCTACGGGGGGGGTATGGACGTTTAA TCTGGAGAAAAATAATAAGAAGAAGCTAGAAGAAACATGGTTGCATTTGG TGCTGGGGATGATCGGGGAGACGATGGAGGATGGAAACGATATTTTGGGG GCGGTGGTTAGCATTAAGAGGGGGCAAGATCGATTAAGTCTGTGGACAAA AACGGCAGCAGATAAGGAGCTGCAGGTCCAGATTGCCAGGAGGGTCAAGA CGAGTTTGGATTTGCCGGAAGGGACGATGCTGGAGTTTAAGCCGAATCAG AAGGTGGCAGAGGTGGGTGGGCGCATGTCTTCGGCAACAGACGTCAAGAC CTATGCCGTCTGAGTTTTCGGAAGGCAACTCGACGAGGAATGAAGCGGGG GAGGGAAGAGGCAACCAAAAAAAGAGGGAAGGTACACAATTGATGGAAGA TGTACATAGAGAAATAAATCAGTCACCTACGAGACAGGAGTGAAGCAGAA GCAAATGCACACTGCCCA back to topprotein sequence of NO11G02210.2 >NO11G02210.2-protein ID=NO11G02210.2-protein|Name=NO11G02210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLGLQADYYLFKDGVRPSY EENPTGGVWTFNLEKNNKKKLEETWLHLVLGMIGETMEDGNDILGAVVSI KRGQDRLSLWTKTAADKELQVQIARRVKTSLDLPEGTMLEFKPNQKVAEV GGRMSSATDVKTYAV* back to topmRNA from alignment at chr11:712271..714200+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02210.2 ID=NO11G02210.2|Name=NO11G02210.2|organism=Nannochloropsis oceanica|type=mRNA|length=1930bp|location=Sequence derived from alignment at chr11:712271..714200+ (Nannochloropsis oceanica) TGCGTCCGATGTCATGGTTATCTGCATGGATGTGCAGGGATGGGGAAGAG
GATGGGGATAGGGAATGAGTGAGAGTGAAGTGTGAAGCGGGTTTGCTGAG
TGTGGGTTTTGCGGAAGCAATGTCATCCGCTGAGATGGGGAAAGAGGCCC
AATCAATCATCCTGTGCTGTGCCTGTTGTGTGAGAGGGACAAGGCCGGCT
TGTGCTACCGGACAAAGCGGATCTGAGGTGGCAAGGAGGAGAAACGCTTA
GGGAGAGACTCTGTCTTTTCCGTGTGATGATGGTGGGTGCTGTTGCTCGG
GGACTTGAAAGCCATCGAGACATGCACGTTGAGGAAAAAAGACTGAACAC
TCTGAACCGGTAAGGGATGTCCTGGTTTCGGCATGCGACTGGGATGATAT
GCTCGCACGCATGTTACACCGTAGTGAAGGACAGAAAAAGAAGCGAAGCA
CGGCACTGGCTTGGACGAAGAGGATCAGCCTGCTGAGCGGTTGCGAATGA
CAACCATCAGGTGATATCCTTCGCGCCCTAGGAGCACAGCACCGCCGCAC
AAACAAATGAGGACAAGGTTCAGCTGATAATTGTAATCTCGTGGCTACAA
CGGGGCTATGCTGAACTCAACGCGCTTTTTACTCTGTGCGACCCACCCTT
TAATTTAGCCTCCCCCCACTCCTGTAGTTACTCCCTGCATCTGCAAGACC
CACAGCGCCCACAACCCCACTTGATGAGAACCACGCCCTTGGTTAAGAAC
AACATGGCCTCCAACAACACCAACAACACGAGCAGCAGCGGCAGCAACGA
CAGCGGGAACAAGTCGGCGGAGGGCGGAGCAGGCAAGGTAAGTCCTGAGG
TTGCGACAGGGTTATGGACGGTGGACCATATTGAAGGGGAGAGTTCATCC
GGCTCTACTCACCCCCGCATCTGCACGCTGCGCTTGCGTATATTTCATGC
GATGGCAAGTTAGGAAACTGTGTAGGTGGGCGCTGTGCATCAATTTTGCG
TGTCATCGAGGATCGACTTACCTTTATTCCTCCCTCCCTTTCCTTCCCTC
CCACATCACAGCACAAGCTACAAAATCGCTGGTCTTTTTTCTACAACAAC
CCCAAAGCCAACCCCATGCTGTCCTGGGAAGAAAAGCTACAGAAAATTTA
TACCTTTGAGACGGTGGAAGATTTTTGGGCTCTTTTTAATTCGGTCGTGG
GTCCGTCTAGGTTAGGACTGCAGGCTGATTACTATTTGTTTAAGGATGGA
GTGAGGCCTTCATATGAGGAGAATCCTACGGGGGGGGTATGGACGTTTAA
TCTGGAGAAAAATAATAAGAAGAAGCTAGAAGAAACATGGTTGCATTTGG
TGCTGGGGATGATCGGGGAGACGATGGAGGATGGAAACGATATTTTGGGG
GCGGTGGTTAGCATTAAGAGGGGGCAAGATCGATTAAGTCTGTGGACAAA
AACGGCAGCAGATAAGGAGCTGCAGGTCCAGATTGCCAGGAGGGTCAAGA
CGAGTTTGGATTTGCCGGAAGGGACGATGCTGGAGTTTAAGCCGAATCAG
AAGGTAGGAGAGGGATGGGAGGGAACGAGGGAGGGAGGGAAGGAGAGTGG
GCATGTCTAGCTCGGATGATATTTGCTTACGCTTATGATTTTTTGTTCGC
ACACATGAAACCTCTTTTTTTTCCCTTTGCCACCATCCTGTTTTGACGAC
TCACACGATTAATAGGTGGCAGAGGTGGGTGGGCGCATGTCTTCGGCAAC
AGACGTCAAGACCTATGCCGTCTGAGTTTTCGGAAGGCAACTCGACGAGG
AATGAAGCGGGGGAGGGAAGAGGCAACCAAAAAAAGAGGGAAGGTACACA
ATTGATGGAAGATGTACATAGAGAAATAAATCAGTCACCTACGAGACAGG
AGTGAAGCAGAAGCAAATGCACACTGCCCA back to topCoding sequence (CDS) from alignment at chr11:712271..714200+ >NO11G02210.2 ID=NO11G02210.2|Name=NO11G02210.2|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr11:712271..714200+ (Nannochloropsis oceanica) ATGCTGTCCTGGGAAGAAAAGCTACAGAAAATTTATACCTTTGAGACGGT GGAAGATTTTTGGGCTCTTTTTAATTCGGTCGTGGGTCCGTCTAGGTTAG GACTGCAGGCTGATTACTATTTGTTTAAGGATGGAGTGAGGCCTTCATAT GAGGAGAATCCTACGGGGGGGGTATGGACGTTTAATCTGGAGAAAAATAA TAAGAAGAAGCTAGAAGAAACATGGTTGCATTTGGTGCTGGGGATGATCG GGGAGACGATGGAGGATGGAAACGATATTTTGGGGGCGGTGGTTAGCATT AAGAGGGGGCAAGATCGATTAAGTCTGTGGACAAAAACGGCAGCAGATAA GGAGCTGCAGGTCCAGATTGCCAGGAGGGTCAAGACGAGTTTGGATTTGC CGGAAGGGACGATGCTGGAGTTTAAGCCGAATCAGAAGGTGGCAGAGGTG GGTGGGCGCATGTCTTCGGCAACAGACGTCAAGACCTATGCCGTCTGA back to top
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