NO11G02210.2, NO11G02210.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02210.2
Unique NameNO11G02210.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1768
Alignment locationchr11:712271..714200 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:712271..714200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G02210.2 vs.
Match: EWM24978.1 (eukaryotic translation initiation factor iso4e [Nannochloropsis gaditana])

HSP 1 Score: 292.7 bits (748), Expect = 7.000e-76
Identity = 143/165 (86.67%), Postives = 149/165 (90.30%), Query Frame = 0
Query:    1 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLGLQADYYLFKDGVRPSYEENPTGGVWTFNLEKNNKKKLEETWLHLVLGMIGETMEDGNDILGAVVSIKRGQDRLSLWTKTAADKELQVQIARRVKTSLDLPEGTMLEFKPNQKVAEVGGRMSSATDVKTYAV 166
            MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRL +QADYYLFK+GVRPSYEENP GGVW FNLEK NKK+LEE WL+LVLG+IGETMED NDILGAVVSIKRGQDRLSLWTKTAADKELQV+IA RVK SLDLP  T LEFKPNQKVAE GG MSSA DVK Y V
Sbjct:  113 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 277          
The following BLAST results are available for this feature:
BLAST of NO11G02210.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24978.17.000e-7686.67eukaryotic translation initiation factor iso4e [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02210NO11G02210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02210.2NO11G02210.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02210.2.cds1NO11G02210.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02210.2.cds2NO11G02210.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02210.2 ID=NO11G02210.2|Name=NO11G02210.2|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp
TGCGTCCGATGTCATGGTTATCTGCATGGATGTGCAGGGATGGGGAAGAG
GATGGGGATAGGGAATGAGTGAGAGTGAAGTGTGAAGCGGGTTTGCTGAG
TGTGGGTTTTGCGGAAGCAATGTCATCCGCTGAGATGGGGAAAGAGGCCC
AATCAATCATCCTGTGCTGTGCCTGTTGTGTGAGAGGGACAAGGCCGGCT
TGTGCTACCGGACAAAGCGGATCTGAGGTGGCAAGGAGGAGAAACGCTTA
GGGAGAGACTCTGTCTTTTCCGTGTGATGATGGTGGGTGCTGTTGCTCGG
GGACTTGAAAGCCATCGAGACATGCACGTTGAGGAAAAAAGACTGAACAC
TCTGAACCGGTAAGGGATGTCCTGGTTTCGGCATGCGACTGGGATGATAT
GCTCGCACGCATGTTACACCGTAGTGAAGGACAGAAAAAGAAGCGAAGCA
CGGCACTGGCTTGGACGAAGAGGATCAGCCTGCTGAGCGGTTGCGAATGA
CAACCATCAGGTGATATCCTTCGCGCCCTAGGAGCACAGCACCGCCGCAC
AAACAAATGAGGACAAGGTTCAGCTGATAATTGTAATCTCGTGGCTACAA
CGGGGCTATGCTGAACTCAACGCGCTTTTTACTCTGTGCGACCCACCCTT
TAATTTAGCCTCCCCCCACTCCTGTAGTTACTCCCTGCATCTGCAAGACC
CACAGCGCCCACAACCCCACTTGATGAGAACCACGCCCTTGGTTAAGAAC
AACATGGCCTCCAACAACACCAACAACACGAGCAGCAGCGGCAGCAACGA
CAGCGGGAACAAGTCGGCGGAGGGCGGAGCAGGCAAGGTAAGTCCTGAGG
TTGCGACAGGGTTATGGACGGTGGACCATATTGAAGGGGAGAGTTCATCC
GGCTCTACTCACCCCCGCATCTGCACGCTGCGCTTGCGTATATTTCATGC
GATGGCAAGTTAGGAAACTGTGTAGGTGGGCGCTGTGCATCAATTTTGCG
TGTCATCGAGGATCGACTTACCTTTATTCCTCCCTCCCTTTCCTTCCCTC
CCACATCACAGCACAAGCTACAAAATCGCTGGTCTTTTTTCTACAACAAC
CCCAAAGCCAACCCCATGCTGTCCTGGGAAGAAAAGCTACAGAAAATTTA
TACCTTTGAGACGGTGGAAGATTTTTGGGCTCTTTTTAATTCGGTCGTGG
GTCCGTCTAGGTTAGGACTGCAGGCTGATTACTATTTGTTTAAGGATGGA
GTGAGGCCTTCATATGAGGAGAATCCTACGGGGGGGGTATGGACGTTTAA
TCTGGAGAAAAATAATAAGAAGAAGCTAGAAGAAACATGGTTGCATTTGG
TGCTGGGGATGATCGGGGAGACGATGGAGGATGGAAACGATATTTTGGGG
GCGGTGGTTAGCATTAAGAGGGGGCAAGATCGATTAAGTCTGTGGACAAA
AACGGCAGCAGATAAGGAGCTGCAGGTCCAGATTGCCAGGAGGGTCAAGA
CGAGTTTGGATTTGCCGGAAGGGACGATGCTGGAGTTTAAGCCGAATCAG
AAGGTGGCAGAGGTGGGTGGGCGCATGTCTTCGGCAACAGACGTCAAGAC
CTATGCCGTCTGAGTTTTCGGAAGGCAACTCGACGAGGAATGAAGCGGGG
GAGGGAAGAGGCAACCAAAAAAAGAGGGAAGGTACACAATTGATGGAAGA
TGTACATAGAGAAATAAATCAGTCACCTACGAGACAGGAGTGAAGCAGAA
GCAAATGCACACTGCCCA
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protein sequence of NO11G02210.2

>NO11G02210.2-protein ID=NO11G02210.2-protein|Name=NO11G02210.2|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLGLQADYYLFKDGVRPSY
EENPTGGVWTFNLEKNNKKKLEETWLHLVLGMIGETMEDGNDILGAVVSI
KRGQDRLSLWTKTAADKELQVQIARRVKTSLDLPEGTMLEFKPNQKVAEV
GGRMSSATDVKTYAV*
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mRNA from alignment at chr11:712271..714200+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02210.2 ID=NO11G02210.2|Name=NO11G02210.2|organism=Nannochloropsis oceanica|type=mRNA|length=1930bp|location=Sequence derived from alignment at chr11:712271..714200+ (Nannochloropsis oceanica)
TGCGTCCGATGTCATGGTTATCTGCATGGATGTGCAGGGATGGGGAAGAG GATGGGGATAGGGAATGAGTGAGAGTGAAGTGTGAAGCGGGTTTGCTGAG TGTGGGTTTTGCGGAAGCAATGTCATCCGCTGAGATGGGGAAAGAGGCCC AATCAATCATCCTGTGCTGTGCCTGTTGTGTGAGAGGGACAAGGCCGGCT TGTGCTACCGGACAAAGCGGATCTGAGGTGGCAAGGAGGAGAAACGCTTA GGGAGAGACTCTGTCTTTTCCGTGTGATGATGGTGGGTGCTGTTGCTCGG GGACTTGAAAGCCATCGAGACATGCACGTTGAGGAAAAAAGACTGAACAC TCTGAACCGGTAAGGGATGTCCTGGTTTCGGCATGCGACTGGGATGATAT GCTCGCACGCATGTTACACCGTAGTGAAGGACAGAAAAAGAAGCGAAGCA CGGCACTGGCTTGGACGAAGAGGATCAGCCTGCTGAGCGGTTGCGAATGA CAACCATCAGGTGATATCCTTCGCGCCCTAGGAGCACAGCACCGCCGCAC AAACAAATGAGGACAAGGTTCAGCTGATAATTGTAATCTCGTGGCTACAA CGGGGCTATGCTGAACTCAACGCGCTTTTTACTCTGTGCGACCCACCCTT TAATTTAGCCTCCCCCCACTCCTGTAGTTACTCCCTGCATCTGCAAGACC CACAGCGCCCACAACCCCACTTGATGAGAACCACGCCCTTGGTTAAGAAC AACATGGCCTCCAACAACACCAACAACACGAGCAGCAGCGGCAGCAACGA CAGCGGGAACAAGTCGGCGGAGGGCGGAGCAGGCAAGGTAAGTCCTGAGG TTGCGACAGGGTTATGGACGGTGGACCATATTGAAGGGGAGAGTTCATCC GGCTCTACTCACCCCCGCATCTGCACGCTGCGCTTGCGTATATTTCATGC GATGGCAAGTTAGGAAACTGTGTAGGTGGGCGCTGTGCATCAATTTTGCG TGTCATCGAGGATCGACTTACCTTTATTCCTCCCTCCCTTTCCTTCCCTC CCACATCACAGCACAAGCTACAAAATCGCTGGTCTTTTTTCTACAACAAC CCCAAAGCCAACCCCATGCTGTCCTGGGAAGAAAAGCTACAGAAAATTTA TACCTTTGAGACGGTGGAAGATTTTTGGGCTCTTTTTAATTCGGTCGTGG GTCCGTCTAGGTTAGGACTGCAGGCTGATTACTATTTGTTTAAGGATGGA GTGAGGCCTTCATATGAGGAGAATCCTACGGGGGGGGTATGGACGTTTAA TCTGGAGAAAAATAATAAGAAGAAGCTAGAAGAAACATGGTTGCATTTGG TGCTGGGGATGATCGGGGAGACGATGGAGGATGGAAACGATATTTTGGGG GCGGTGGTTAGCATTAAGAGGGGGCAAGATCGATTAAGTCTGTGGACAAA AACGGCAGCAGATAAGGAGCTGCAGGTCCAGATTGCCAGGAGGGTCAAGA CGAGTTTGGATTTGCCGGAAGGGACGATGCTGGAGTTTAAGCCGAATCAG AAGGTAGGAGAGGGATGGGAGGGAACGAGGGAGGGAGGGAAGGAGAGTGG GCATGTCTAGCTCGGATGATATTTGCTTACGCTTATGATTTTTTGTTCGC ACACATGAAACCTCTTTTTTTTCCCTTTGCCACCATCCTGTTTTGACGAC TCACACGATTAATAGGTGGCAGAGGTGGGTGGGCGCATGTCTTCGGCAAC AGACGTCAAGACCTATGCCGTCTGAGTTTTCGGAAGGCAACTCGACGAGG AATGAAGCGGGGGAGGGAAGAGGCAACCAAAAAAAGAGGGAAGGTACACA ATTGATGGAAGATGTACATAGAGAAATAAATCAGTCACCTACGAGACAGG AGTGAAGCAGAAGCAAATGCACACTGCCCA
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Coding sequence (CDS) from alignment at chr11:712271..714200+

>NO11G02210.2 ID=NO11G02210.2|Name=NO11G02210.2|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr11:712271..714200+ (Nannochloropsis oceanica)
ATGCTGTCCTGGGAAGAAAAGCTACAGAAAATTTATACCTTTGAGACGGT
GGAAGATTTTTGGGCTCTTTTTAATTCGGTCGTGGGTCCGTCTAGGTTAG
GACTGCAGGCTGATTACTATTTGTTTAAGGATGGAGTGAGGCCTTCATAT
GAGGAGAATCCTACGGGGGGGGTATGGACGTTTAATCTGGAGAAAAATAA
TAAGAAGAAGCTAGAAGAAACATGGTTGCATTTGGTGCTGGGGATGATCG
GGGAGACGATGGAGGATGGAAACGATATTTTGGGGGCGGTGGTTAGCATT
AAGAGGGGGCAAGATCGATTAAGTCTGTGGACAAAAACGGCAGCAGATAA
GGAGCTGCAGGTCCAGATTGCCAGGAGGGTCAAGACGAGTTTGGATTTGC
CGGAAGGGACGATGCTGGAGTTTAAGCCGAATCAGAAGGTGGCAGAGGTG
GGTGGGCGCATGTCTTCGGCAACAGACGTCAAGACCTATGCCGTCTGA
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Synonyms
Publications