NO11G02180.1, NO11G02180.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02180.1
Unique NameNO11G02180.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1223
Alignment locationchr11:703640..704862 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:703640..704862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02180.1 vs.
Match: EWM19967.1 (hypothetical protein Naga_102579g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 278.9 bits (712), Expect = 2.100e-71
Identity = 133/198 (67.17%), Postives = 160/198 (80.81%), Query Frame = 0 
Query:  135 RDVVPKARGLVSMVYKSHIANQNYHESANFFLVTYRDPYDMVCSMAKMFRPIFLTDFAQALHSCHTMAQNERRINELAEAAGPGNALFVHHSALHTLEGMTEVVEAMARMWKVQGGVVDARGVAREVLELQSPPPGVFPVAHPRSELHANHITQSNNTQQDCAPMREALEADERCSAWHRRYERMFPPGTTELVRDSL 333
            RDVVPKA+G VSMVYKSH A+Q YH SA+FFLVT+RDPYDMVCSM  MFRP+F TDF +A+ SC  MA NE+RI  L  A+  G+AL VHHSAL++ E M +VVEAMA  W V GG +DARGVAREVLEL++PP G+FPVAHPR+ELHA+HIT S++T++DC  +R ALEAD  C AWH RYE+ FPPGT +LVRDS+
Sbjct:    1 RDVVPKAKGQVSMVYKSHWADQEYHNSADFFLVTHRDPYDMVCSMGNMFRPVFFTDFKRAISSCRGMADNEKRI--LRVASKSGSALHVHHSALYSAESMAQVVEAMALKWNVTGGKIDARGVAREVLELRAPPEGIFPVAHPRTELHADHITASSSTKKDCTELRRALEADSVCRAWHDRYEQSFPPGTAQLVRDSI 196
The following BLAST results are available for this feature:
BLAST of NO11G02180.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM19967.12.100e-7167.17hypothetical protein Naga_102579g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02180NO11G02180Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02180.1NO11G02180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02180.1.cds1NO11G02180.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02180.1 ID=NO11G02180.1|Name=NO11G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp
ACAGGCGAGGCGCAAGGGGGTACAGAATATCACACGCAAGCAAACACCAA
AACAATTACAATGGGTCGCTACAGGAACTGGCCCGTCAATTACTCCGCAT
CCCGCATGGTGTTGGTCTTATTGAGTTTAATCTTTGGCGCCCAGCTTGTC
ATAATTGCGCGTTATGAGAAGCCTAGTCCTGCTACGACGACGGCTGCAGT
GGCAGGTCAAGATGTTGCTGCGCCGGCTGCGGTTTCCTTGACTGCCGATG
CCTCCACCAGCTCTCAATCCTCCTCGCTTGACACCGTCGATCCTCCCTTG
CCACGCTTGGCCGCTCCTCTCATCGTCGCCTGCTTGGCCAACATGCGTAC
CGTCTCAACGACAGCCTACAACCTGGCCCGGGTTTTGATGGAGCGGGTGG
ACCCTAATTCCGCGTCGGGGTGGGAGAAGGACGTGACGGGTACCAACACT
GACATCTTAATTCGGGATGTCGTCCCCAAAGCCCGAGGCTTGGTCAGCAT
GGTGTACAAATCTCATATAGCAAATCAAAACTATCACGAAAGTGCCAATT
TCTTCTTGGTGACGTACCGGGACCCGTATGACATGGTTTGCTCAATGGCC
AAGATGTTTCGGCCTATATTCTTGACGGACTTTGCTCAGGCCTTGCACTC
TTGCCATACCATGGCGCAGAACGAACGGAGGATCAATGAGCTTGCCGAAG
CTGCGGGGCCTGGAAATGCATTATTTGTGCATCATTCTGCGCTCCATACA
CTGGAGGGTATGACGGAAGTGGTGGAGGCAATGGCAAGGATGTGGAAGGT
GCAAGGAGGTGTGGTCGACGCAAGAGGTGTGGCGAGGGAGGTGTTGGAGC
TACAGTCACCACCACCTGGAGTTTTCCCGGTTGCACATCCCAGGAGTGAG
TTACATGCGAACCATATAACGCAGTCGAATAATACACAGCAGGATTGTGC
GCCGATGAGGGAGGCGTTGGAGGCGGATGAGAGGTGTAGTGCATGGCATA
GGCGATATGAGAGAATGTTTCCGCCAGGAACGACGGAGTTGGTCAGAGAC
AGCTTGAAGACACGACGTTGAGATGAAAGAAGGGTGAGGTACGCCTGAGC
TTGGTAGCAATACACTACCTCAGTATGTACGTGTAGGGGTGTTGTCATTT
AACTAGGGGAGCGAAGAAGAAAGGCATTTATGCATATACATATACATTTA
CATATATAAATACACATATAAAC
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protein sequence of NO11G02180.1

>NO11G02180.1-protein ID=NO11G02180.1-protein|Name=NO11G02180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MGRYRNWPVNYSASRMVLVLLSLIFGAQLVIIARYEKPSPATTTAAVAGQ
DVAAPAAVSLTADASTSSQSSSLDTVDPPLPRLAAPLIVACLANMRTVST
TAYNLARVLMERVDPNSASGWEKDVTGTNTDILIRDVVPKARGLVSMVYK
SHIANQNYHESANFFLVTYRDPYDMVCSMAKMFRPIFLTDFAQALHSCHT
MAQNERRINELAEAAGPGNALFVHHSALHTLEGMTEVVEAMARMWKVQGG
VVDARGVAREVLELQSPPPGVFPVAHPRSELHANHITQSNNTQQDCAPMR
EALEADERCSAWHRRYERMFPPGTTELVRDSLKTRR*
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mRNA from alignment at chr11:703640..704862+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02180.1 ID=NO11G02180.1|Name=NO11G02180.1|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp|location=Sequence derived from alignment at chr11:703640..704862+ (Nannochloropsis oceanica)
ACAGGCGAGGCGCAAGGGGGTACAGAATATCACACGCAAGCAAACACCAA
AACAATTACAATGGGTCGCTACAGGAACTGGCCCGTCAATTACTCCGCAT
CCCGCATGGTGTTGGTCTTATTGAGTTTAATCTTTGGCGCCCAGCTTGTC
ATAATTGCGCGTTATGAGAAGCCTAGTCCTGCTACGACGACGGCTGCAGT
GGCAGGTCAAGATGTTGCTGCGCCGGCTGCGGTTTCCTTGACTGCCGATG
CCTCCACCAGCTCTCAATCCTCCTCGCTTGACACCGTCGATCCTCCCTTG
CCACGCTTGGCCGCTCCTCTCATCGTCGCCTGCTTGGCCAACATGCGTAC
CGTCTCAACGACAGCCTACAACCTGGCCCGGGTTTTGATGGAGCGGGTGG
ACCCTAATTCCGCGTCGGGGTGGGAGAAGGACGTGACGGGTACCAACACT
GACATCTTAATTCGGGATGTCGTCCCCAAAGCCCGAGGCTTGGTCAGCAT
GGTGTACAAATCTCATATAGCAAATCAAAACTATCACGAAAGTGCCAATT
TCTTCTTGGTGACGTACCGGGACCCGTATGACATGGTTTGCTCAATGGCC
AAGATGTTTCGGCCTATATTCTTGACGGACTTTGCTCAGGCCTTGCACTC
TTGCCATACCATGGCGCAGAACGAACGGAGGATCAATGAGCTTGCCGAAG
CTGCGGGGCCTGGAAATGCATTATTTGTGCATCATTCTGCGCTCCATACA
CTGGAGGGTATGACGGAAGTGGTGGAGGCAATGGCAAGGATGTGGAAGGT
GCAAGGAGGTGTGGTCGACGCAAGAGGTGTGGCGAGGGAGGTGTTGGAGC
TACAGTCACCACCACCTGGAGTTTTCCCGGTTGCACATCCCAGGAGTGAG
TTACATGCGAACCATATAACGCAGTCGAATAATACACAGCAGGATTGTGC
GCCGATGAGGGAGGCGTTGGAGGCGGATGAGAGGTGTAGTGCATGGCATA
GGCGATATGAGAGAATGTTTCCGCCAGGAACGACGGAGTTGGTCAGAGAC
AGCTTGAAGACACGACGTTGAGATGAAAGAAGGGTGAGGTACGCCTGAGC
TTGGTAGCAATACACTACCTCAGTATGTACGTGTAGGGGTGTTGTCATTT
AACTAGGGGAGCGAAGAAGAAAGGCATTTATGCATATACATATACATTTA
CATATATAAATACACATATAAAC
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Coding sequence (CDS) from alignment at chr11:703640..704862+

>NO11G02180.1 ID=NO11G02180.1|Name=NO11G02180.1|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at chr11:703640..704862+ (Nannochloropsis oceanica)
ATGGGTCGCTACAGGAACTGGCCCGTCAATTACTCCGCATCCCGCATGGT
GTTGGTCTTATTGAGTTTAATCTTTGGCGCCCAGCTTGTCATAATTGCGC
GTTATGAGAAGCCTAGTCCTGCTACGACGACGGCTGCAGTGGCAGGTCAA
GATGTTGCTGCGCCGGCTGCGGTTTCCTTGACTGCCGATGCCTCCACCAG
CTCTCAATCCTCCTCGCTTGACACCGTCGATCCTCCCTTGCCACGCTTGG
CCGCTCCTCTCATCGTCGCCTGCTTGGCCAACATGCGTACCGTCTCAACG
ACAGCCTACAACCTGGCCCGGGTTTTGATGGAGCGGGTGGACCCTAATTC
CGCGTCGGGGTGGGAGAAGGACGTGACGGGTACCAACACTGACATCTTAA
TTCGGGATGTCGTCCCCAAAGCCCGAGGCTTGGTCAGCATGGTGTACAAA
TCTCATATAGCAAATCAAAACTATCACGAAAGTGCCAATTTCTTCTTGGT
GACGTACCGGGACCCGTATGACATGGTTTGCTCAATGGCCAAGATGTTTC
GGCCTATATTCTTGACGGACTTTGCTCAGGCCTTGCACTCTTGCCATACC
ATGGCGCAGAACGAACGGAGGATCAATGAGCTTGCCGAAGCTGCGGGGCC
TGGAAATGCATTATTTGTGCATCATTCTGCGCTCCATACACTGGAGGGTA
TGACGGAAGTGGTGGAGGCAATGGCAAGGATGTGGAAGGTGCAAGGAGGT
GTGGTCGACGCAAGAGGTGTGGCGAGGGAGGTGTTGGAGCTACAGTCACC
ACCACCTGGAGTTTTCCCGGTTGCACATCCCAGGAGTGAGTTACATGCGA
ACCATATAACGCAGTCGAATAATACACAGCAGGATTGTGCGCCGATGAGG
GAGGCGTTGGAGGCGGATGAGAGGTGTAGTGCATGGCATAGGCGATATGA
GAGAATGTTTCCGCCAGGAACGACGGAGTTGGTCAGAGACAGCTTGAAGA
CACGACGTTGA
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Synonyms
Publications