NO11G02170.1, NO11G02170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02170.1
Unique NameNO11G02170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1510
Alignment locationchr11:701587..703464 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:701587..703464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02170.1 vs.
Match: EWM25015.1 (dihydrouridine synthase [Nannochloropsis gaditana])

HSP 1 Score: 449.9 bits (1156), Expect = 7.300e-123
Identity = 205/253 (81.03%), Postives = 233/253 (92.09%), Query Frame = 0 
Query:   43 DLASHAAQAWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLREKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAIDLNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPSFKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVIPVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNMRL 296
            DL +H A+AW WYR+MGSP+YVCAPMVDQSELAFRLLCRRYGTQLA+SPMVHAACYLREKRSKRN++FFCNT P+D+PLIVQLCGNDP +LLAAAKEICRI+GVCA+DLNLGCPQGIARKGKYGAFLLHQ DLVV+IVSTL++ LDKPVTCKIRLLP+F +T++LC ALV AGCSLLTVHGRTK+QNKHLVG CDWE IR+IK  + +PVFANGGI+DLDDV +C+  T VDGVMSSEALLENPGLFSRN+ +
Sbjct:   37 DLEAHVARAWRWYRSMGSPRYVCAPMVDQSELAFRLLCRRYGTQLAFSPMVHAACYLREKRSKRNEVFFCNTNPQDWPLIVQLCGNDPGVLLAAAKEICRIEGVCAVDLNLGCPQGIARKGKYGAFLLHQADLVVRIVSTLSRELDKPVTCKIRLLPTFSETLALCQALVGAGCSLLTVHGRTKEQNKHLVGSCDWEAIRKIKAAVPVPVFANGGIADLDDVEKCLSFTKVDGVMSSEALLENPGLFSRNVNV 289
The following BLAST results are available for this feature:
BLAST of NO11G02170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25015.17.300e-12381.03dihydrouridine synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02170NO11G02170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02170.1NO11G02170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02170.1.cds1NO11G02170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02170.1.cds2NO11G02170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02170.1 ID=NO11G02170.1|Name=NO11G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp
CAGCTCTCCGCCTCCTGGCTGTCTCTACACTTCGTTTATGCCGTTTTCTC
ATGCCTCTTTCCTCGGTCCTCCTTGCCCCTTCCGCTCTCAAGCACACAGA
TATGACGGCACCTGATCCTGCCTCGGAGCACACGGCAGGGGGTGTCCCCC
AATCCGCCACATCATCACCAACCTTTGATCTAGCATCGCATGCGGCCCAG
GCGTGGGAATGGTACCGGAACATGGGGAGCCCGCAGTACGTGTGTGCCCC
CATGGTGGATCAGTCAGAGCTGGCTTTTCGATTGTTGTGCCGTCGCTACG
GCACCCAACTCGCCTACTCCCCCATGGTTCACGCTGCCTGCTACCTTCGT
GAAAAACGGAGCAAGCGAAACGATATTTTTTTCTGCAACACCACTCCTGA
AGACTATCCCCTCATCGTCCAGCTATGTGGAAATGATCCTGAAATTCTCT
TGGCTGCTGCCAAGGAAATTTGCCGCATCGACGGCGTGTGCGCGATCGAC
CTAAATCTCGGCTGCCCCCAAGGAATAGCTCGCAAGGGTAAATACGGCGC
GTTTTTACTGCACCAGACTGATTTGGTCGTGAAAATTGTTTCTACTCTGG
CTCAGGGGCTGGATAAACCCGTGACGTGTAAAATTCGTTTATTGCCTTCT
TTTAAGGATACGATGTCGTTGTGCCATGCCCTGGTAGCGGCAGGTTGTTC
CCTTTTGACGGTGCATGGGCGAACCAAGGATCAGAACAAACATTTGGTGG
GCATGTGCGATTGGGAGATGATTAGGCGGATAAAGGAAGAGATGGTGATT
CCGGTGTTCGCGAACGGTGGGATTAGTGACTTGGATGATGTGCTGAGGTG
TATGGAGGCCACGGGAGTGGACGGGGTCATGAGCTCTGAAGCGCTTTTGG
AAAATCCGGGGCTGTTCTCGAGGAATATGAGGTTAAGTAAGCAAGGAGAG
AAAGTAAAGGAGGTGTATAGACCTGGGGGGGGGAGAAGAGGGAAGAAAAG
AAGAGAGGGAAGGAAGGCAACGATCGCCGCCGACAGCAACAGGAAGAGGA
ACGCAGCCTCCGCCGATCTAATCAATTGGATCTCGCTGAGGAATACTTGC
AAATAGTCGATCAACACCCCCCCGAGAGGCTCAAATGCGTCCGAGCCCAT
GTCTTCAAAATGGCATTCACGGGCGTGCAGCTCTACGAGGATTTAAGGGA
TAATTTGGTGGTGGCGGAGACAGTGGAGGAAATAAAGGAAGTGGTCAGAG
AGATAAGGAGGAGAGCCGTGGAGGAAGGGAGGGAGGAAGGGGTGGGAGAA
CGATCGTGGTATTGGCGACATTGGACAGAGGAGAAGGATGGGGGAGGAGA
GAGTGGGGTGTTGGAAGTGGTGGAGCACGACGGTGTGGGGGAGGAGGGGT
TCGATGGCATGGGCTGTCTTTTCGGAGGCGAGGAGGGAGATTGAAGAGGT
AGAGGAGAGGGGAAAAGGAGAATGTGAAGAAAGAAAGAAAGTACAAACAC
GCTGCTAGGT
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protein sequence of NO11G02170.1

>NO11G02170.1-protein ID=NO11G02170.1-protein|Name=NO11G02170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MPLSSVLLAPSALKHTDMTAPDPASEHTAGGVPQSATSSPTFDLASHAAQ
AWEWYRNMGSPQYVCAPMVDQSELAFRLLCRRYGTQLAYSPMVHAACYLR
EKRSKRNDIFFCNTTPEDYPLIVQLCGNDPEILLAAAKEICRIDGVCAID
LNLGCPQGIARKGKYGAFLLHQTDLVVKIVSTLAQGLDKPVTCKIRLLPS
FKDTMSLCHALVAAGCSLLTVHGRTKDQNKHLVGMCDWEMIRRIKEEMVI
PVFANGGISDLDDVLRCMEATGVDGVMSSEALLENPGLFSRNMRLSKQGE
KVKEVYRPGGGRRGKKRREGRKATIAADSNRKRNAASADLINWISLRNTC
K*
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mRNA from alignment at chr11:701587..703464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02170.1 ID=NO11G02170.1|Name=NO11G02170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp|location=Sequence derived from alignment at chr11:701587..703464- (Nannochloropsis oceanica)
CAGCTCTCCGCCTCCTGGCTGTCTCTACACTTCGTTTATGCCGTTTTCTC
ATGCCTCTTTCCTCGGTCCTCCTTGCCCCTTCCGCTCTCAAGCACACAGA
TATGACGGCACCTGATCCTGCCTCGGAGCACACGGCAGGGGGTGTCCCCC
AATCCGCCACATCATCACCAACCTTTGATCTAGCATCGCATGCGGCCCAG
GCGTGGGAATGGTACCGGAACATGGGGAGCCCGCAGTACGTGTGTGCCCC
CATGGTGGATCAGTCAGAGCTGGCTTTTCGATTGTTGTGCCGGTACGTGA
TGGAGAGAGGGGTCGACTTATAGGGGCGGAATAGCAGATGTGGAAGAAAG
GGATAGTGGTTGAGAGGCTATACTACGTGTACGTATGTATGTGACAGAAT
GATGTCTGTGAGTATGTACGATGTGTATGTATGTATATTTGTGTATTATA
TTGATATATATTGTACAAATATATGTATATTATATTGTGTATTGTACTGT
ATGTATTGTGTATTATGTGTATTATGTATGTGTGTCTCGCCCTCATCCTT
ACCACGCAGCCCCCAAGGGTACAATAGGCACCCTAAACTCAATCAGAGTG
CACTCTCAACATCCCTTGACTGCATCTCATCCTCTCCTTCCCTTCCCTTC
CCCCAAACAGTCGCTACGGCACCCAACTCGCCTACTCCCCCATGGTTCAC
GCTGCCTGCTACCTTCGTGAAAAACGGAGCAAGCGAAACGATATTTTTTT
CTGCAACACCACTCCTGAAGACTATCCCCTCATCGTCCAGCTATGTGGAA
ATGATCCTGAAATTCTCTTGGCTGCTGCCAAGGAAATTTGCCGCATCGAC
GGCGTGTGCGCGATCGACCTAAATCTCGGCTGCCCCCAAGGAATAGCTCG
CAAGGGTAAATACGGCGCGTTTTTACTGCACCAGACTGATTTGGTCGTGA
AAATTGTTTCTACTCTGGCTCAGGGGCTGGATAAACCCGTGACGTGTAAA
ATTCGTTTATTGCCTTCTTTTAAGGATACGATGTCGTTGTGCCATGCCCT
GGTAGCGGCAGGTTGTTCCCTTTTGACGGTGCATGGGCGAACCAAGGATC
AGAACAAACATTTGGTGGGCATGTGCGATTGGGAGATGATTAGGCGGATA
AAGGAAGAGATGGTGATTCCGGTGTTCGCGAACGGTGGGATTAGTGACTT
GGATGATGTGCTGAGGTGTATGGAGGCCACGGGAGTGGACGGGGTCATGA
GCTCTGAAGCGCTTTTGGAAAATCCGGGGCTGTTCTCGAGGAATATGAGG
TTAAGTAAGCAAGGAGAGAAAGTAAAGGAGGTGTATAGACCTGGGGGGGG
GAGAAGAGGGAAGAAAAGAAGAGAGGGAAGGAAGGCAACGATCGCCGCCG
ACAGCAACAGGAAGAGGAACGCAGCCTCCGCCGATCTAATCAATTGGATC
TCGCTGAGGAATACTTGCAAATAGTCGATCAACACCCCCCCGAGAGGCTC
AAATGCGTCCGAGCCCATGTCTTCAAAATGGCATTCACGGGCGTGCAGCT
CTACGAGGATTTAAGGGATAATTTGGTGGTGGCGGAGACAGTGGAGGAAA
TAAAGGAAGTGGTCAGAGAGATAAGGAGGAGAGCCGTGGAGGAAGGGAGG
GAGGAAGGGGTGGGAGAACGATCGTGGTATTGGCGACATTGGACAGAGGA
GAAGGATGGGGGAGGAGAGAGTGGGGTGTTGGAAGTGGTGGAGCACGACG
GTGTGGGGGAGGAGGGGTTCGATGGCATGGGCTGTCTTTTCGGAGGCGAG
GAGGGAGATTGAAGAGGTAGAGGAGAGGGGAAAAGGAGAATGTGAAGAAA
GAAAGAAAGTACAAACACGCTGCTAGGT
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Coding sequence (CDS) from alignment at chr11:701587..703464-

>NO11G02170.1 ID=NO11G02170.1|Name=NO11G02170.1|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at chr11:701587..703464- (Nannochloropsis oceanica)
ATGCCTCTTTCCTCGGTCCTCCTTGCCCCTTCCGCTCTCAAGCACACAGA
TATGACGGCACCTGATCCTGCCTCGGAGCACACGGCAGGGGGTGTCCCCC
AATCCGCCACATCATCACCAACCTTTGATCTAGCATCGCATGCGGCCCAG
GCGTGGGAATGGTACCGGAACATGGGGAGCCCGCAGTACGTGTGTGCCCC
CATGGTGGATCAGTCAGAGCTGGCTTTTCGATTGTTGTGCCGTCGCTACG
GCACCCAACTCGCCTACTCCCCCATGGTTCACGCTGCCTGCTACCTTCGT
GAAAAACGGAGCAAGCGAAACGATATTTTTTTCTGCAACACCACTCCTGA
AGACTATCCCCTCATCGTCCAGCTATGTGGAAATGATCCTGAAATTCTCT
TGGCTGCTGCCAAGGAAATTTGCCGCATCGACGGCGTGTGCGCGATCGAC
CTAAATCTCGGCTGCCCCCAAGGAATAGCTCGCAAGGGTAAATACGGCGC
GTTTTTACTGCACCAGACTGATTTGGTCGTGAAAATTGTTTCTACTCTGG
CTCAGGGGCTGGATAAACCCGTGACGTGTAAAATTCGTTTATTGCCTTCT
TTTAAGGATACGATGTCGTTGTGCCATGCCCTGGTAGCGGCAGGTTGTTC
CCTTTTGACGGTGCATGGGCGAACCAAGGATCAGAACAAACATTTGGTGG
GCATGTGCGATTGGGAGATGATTAGGCGGATAAAGGAAGAGATGGTGATT
CCGGTGTTCGCGAACGGTGGGATTAGTGACTTGGATGATGTGCTGAGGTG
TATGGAGGCCACGGGAGTGGACGGGGTCATGAGCTCTGAAGCGCTTTTGG
AAAATCCGGGGCTGTTCTCGAGGAATATGAGGTTAAGTAAGCAAGGAGAG
AAAGTAAAGGAGGTGTATAGACCTGGGGGGGGGAGAAGAGGGAAGAAAAG
AAGAGAGGGAAGGAAGGCAACGATCGCCGCCGACAGCAACAGGAAGAGGA
ACGCAGCCTCCGCCGATCTAATCAATTGGATCTCGCTGAGGAATACTTGC
AAATAG
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Synonyms
Publications