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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:662713..665581 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02070.1 vs.
Match: EWM25000.1 (putative cleavage-induced protein [Nannochloropsis gaditana]) HSP 1 Score: 328.9 bits (842), Expect = 4.100e-86 Identity = 207/299 (69.23%), Postives = 224/299 (74.92%), Query Frame = 0
Query: 502 GVPERRPLRRFAPSGGEDLSRPRRFEERR-----------------------RRRRGGGGGGGRGGEGANAAIKAVAAAAKAAEQEEKKLKKESEAAKRQAEEEARRAAKEEQVLRLKREKEAQVAAAAEAALIAKDLVAGGLKGKELLAAVKEKGASVKGSALLGEVLSVQGSDEALAGLGWMAGKEYGMALLGLLRGNVEDQKEAVYAVQRVVEGRGYPKVPKDGGDPLLEKLFHGLYGADVLDENAFTGWRDDDREEGNKRKAVVQTTPWFQWLETAEE--EEEEEEDDIEELNNI 776
G+PERRPLRRFAPS GEDLSRPRRFE+ R R R G G GGRG E A AA KA AAAKAAEQEEKK K+E EAAKR AEEEARRAAKE +VLRLK EKEA+ AAAE A +AK LVA GLKGKEL AA +EKG + KGSA+L VL S+EALA LGWMAG +YG L L + DQKEAVYAVQRVVE RGYPKV GGDPLLEKLFHGLYGAD+LDE AFTGWRDDDREEGNKRKAVVQTTPWFQWLETA+E ++EEE+DDIEELNNI
Sbjct: 4 GMPERRPLRRFAPSAGEDLSRPRRFEDSRTPPPYGSRGNSPGLPFEGERGMDRMDRSGVGPGGRGVEAA-AAAKAAEAAAKAAEQEEKKAKRELEAAKRAAEEEARRAAKEAEVLRLKEEKEAKAKAAAECADVAKALVASGLKGKELWAAAQEKGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLAKDTTDQKEAVYAVQRVVEARGYPKV---GGDPLLEKLFHGLYGADLLDEAAFTGWRDDDREEGNKRKAVVQTTPWFQWLETADEDDDDEEEDDDIEELNNI 298
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02070.1 ID=NO11G02070.1|Name=NO11G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2801bp
GGTCTCTATGCCAGCATTCCCCCCTTGCGTGAAGCACACATCGCTTGGTC
GAATGAATCCTTGTATTGGTAGTGTGCCTCGTCTCGTGGTTTTATTTGAT
CTTCAGCACTGCGCAATGATTATGCTCTTCCCAAGCCTTCCAATCCACCC
ACAGGCTTTTTTTTGGTGGGTGCGTGTGTGGCTCTCGAGCGACTCATGCT
TCTTCCTTCATTTGCGAATGCCCCACCGTAATAAGCCAGCAATGAGGGCT
GATCACCATACCACACCACGTATTGGTTCTCCAAAGAGATGTCCTCAGTG
TATGCCCTCCTATATCCCCTCCGTTCACCATCCCATAGGCGCAGCAGCAC
ATTCGCAGCCGCCCACCTCAAAACACGAGTACTGAAAGGAGCAGGGTCTC
AAGCACCTCGTCTCCTTCTACGAAAACTTTCGACAAACAAAAAGCAAACA
AGCAAGCAAGCAACACCTGCAACATGTCTAAAAAAGGTACCAAGCTTTCC
CTTGGGGACTTCCAAAAGCTGAGCGGGGCCGTGGACAGGAACCCTCTGCC
TACCGGACCATCTGGCCGTTCGTCTGAGGATGGTCATCGGGGCGAAGGCC
GTCGCGGAGGAGGGAGAGGCGGCGGCGGTGGCTTCCGTGATCGCGATCGT
GGAGATCGTGAAGGGGGCAGTAATTCGGATGGAAGCTGGTCAAGGGGTGG
TGGCGCAGGGGGAGGTTTCGAGGACCGTGGAGGTTTTCGTGAAAGAGGAG
GAGGGGGACGTTTTGGAGATGATGACCGGGGCCCACCTCGCAGGGGAGGT
TTTGGGGATGATGAACGAGGCCCGCCTAGGTCAAGGGCCGATGACGGGCC
GTGGACTCGAGGAGGAGGAGACGACGACTTTGATCGTGCCCCGCCCCGTC
GTCGCGAGGGTATGGGTGGTGGAGGGAGGGAAGGAGGGGAAGGTGGGGCG
GACGACAACACGCCGACGAATTGGCGGGGACAGGGAGGAAGAGCGGGAGG
GGGGGAGGACATAGGCCCGCCTCGACGCGGGTATGATGGGCCTGCGGAGA
GGCCGCGGTTGAACCTAAAGCCGAGGAGTACTGCTGGTCCAGGGGGGGAG
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAATAGCTTGTTTGGGGGTGC
CAAACCTGTTGATACGGCGGCAAGAGAGGAGGAGATTTTGACGCGGAAAT
TGGACAAGGTGAGGGTGGGAGGGGAGGAGGGAGTGGAGGAAGGAGGGGAA
GGTCCCGCTGCCGAGTCTCAGGAAGGAGGGAATGAGAGCACACCTGCTGC
TCCTGCTGCTGCTCTTGGGATCGAGTCTATGACTGAGGGAGGAGAGGCTG
AGACGAAGAAGGAGAAGGAGCAGCGGTGGGGAGGGGATAAGCCGGAGGGT
GAGGAGGAAGGGAGGGAGGGAGCGACGGTCCGACCCGTGCCTCGACGACG
ACCAACGCCTGAGCCTGCCCCCCGAAATATGAGATGGAAGGAGGACGGGC
CGGGGGAGGGAGGGAGAGAGGAAGGAAGACGGATGGGAGGGGGAGAGAAG
GAGCTGGGCAATGGACGTGGAGGAGGGATGGACCGAGGGATGGGGGGAGG
GCGGGGTGGTGGAGGAGGAGGGTTCGGTGGGGGCTATGGAAGGAAGGATG
ACATGGAAGCGGGAGGAAGAGATGGAGGGCGGGGTGGTGGAGGGGGAGGG
TTCGGTGGGGGCTATGGAAGGAGGGACCGAGATCGTGAGGGAGGAGATGA
CTATAGGCGGAGGGATGGGGAGGGTTTCGGGGGGGCTAGACGAGATGGAG
GCAGCAGGGAAGGAGGAAGGTTGGGAGATGACTATCCTCGACGGGGTGGA
TGGGAGGAAGAGCGTGGGGAGCTACGTCGGGAGGTAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAG
GAGGAGGAGGAGGAGAGGAGGGAGGCGGAGTGCCGGAACGTCGTCCTTTG
CGGCGGTTCGCGCCTTCGGGGGGGGAAGATTTGTCGAGGCCACGTCGGTT
TGAAGAAAGGAGGAGGAGGAGGAGGGGGGGAGGAGGAGGAGGAGGAAGAG
GAGGGGAAGGAGCGAACGCGGCTATCAAGGCTGTAGCTGCTGCGGCGAAG
GCGGCAGAGCAGGAGGAGAAGAAGTTGAAGAAGGAGTCAGAGGCCGCGAA
GCGTCAAGCAGAAGAGGAAGCCCGCCGCGCTGCGAAGGAAGAGCAGGTTT
TGCGGTTGAAGAGGGAAAAGGAGGCTCAGGTAGCAGCAGCAGCAGAAGCA
GCATTGATTGCCAAGGATTTGGTGGCTGGCGGGCTCAAGGGCAAGGAGCT
GCTGGCGGCCGTGAAGGAGAAGGGGGCATCGGTGAAGGGCTCGGCCTTGT
TGGGCGAGGTATTGTCGGTGCAAGGGTCGGACGAGGCGTTGGCAGGCTTG
GGATGGATGGCCGGCAAGGAGTATGGAATGGCGTTGTTGGGCTTGTTGAG
GGGAAACGTGGAGGATCAGAAGGAGGCGGTGTATGCGGTGCAGAGAGTTG
TGGAGGGAAGGGGGTATCCCAAGGTGCCGAAGGATGGAGGGGATCCGTTG
TTGGAGAAGCTGTTTCATGGGCTGTATGGCGCAGACGTGCTGGATGAGAA
TGCCTTCACAGGGTGGAGAGATGATGACAGAGAGGAAGGGAATAAGCGCA
AGGCGGTTGTGCAGACCACGCCGTGGTTTCAGTGGTTAGAAACGGCGGAG
GAGGAGGAGGAGGAGGAGGAGGATGATATCGAGGAGCTGAATAATATCTA
A back to topprotein sequence of NO11G02070.1 >NO11G02070.1-protein ID=NO11G02070.1-protein|Name=NO11G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=776bp
MSKKGTKLSLGDFQKLSGAVDRNPLPTGPSGRSSEDGHRGEGRRGGGRGG
GGGFRDRDRGDREGGSNSDGSWSRGGGAGGGFEDRGGFRERGGGGRFGDD
DRGPPRRGGFGDDERGPPRSRADDGPWTRGGGDDDFDRAPPRRREGMGGG
GREGGEGGADDNTPTNWRGQGGRAGGGEDIGPPRRGYDGPAERPRLNLKP
RSTAGPGGEGGGGGGGGGGNSLFGGAKPVDTAAREEEILTRKLDKVRVGG
EEGVEEGGEGPAAESQEGGNESTPAAPAAALGIESMTEGGEAETKKEKEQ
RWGGDKPEGEEEGREGATVRPVPRRRPTPEPAPRNMRWKEDGPGEGGREE
GRRMGGGEKELGNGRGGGMDRGMGGGRGGGGGGFGGGYGRKDDMEAGGRD
GGRGGGGGGFGGGYGRRDRDREGGDDYRRRDGEGFGGARRDGGSREGGRL
GDDYPRRGGWEEERGELRREVGGGGGGGGGGGGGGGGGEGGGGGGGGEEG
GGVPERRPLRRFAPSGGEDLSRPRRFEERRRRRRGGGGGGGRGGEGANAA
IKAVAAAAKAAEQEEKKLKKESEAAKRQAEEEARRAAKEEQVLRLKREKE
AQVAAAAEAALIAKDLVAGGLKGKELLAAVKEKGASVKGSALLGEVLSVQ
GSDEALAGLGWMAGKEYGMALLGLLRGNVEDQKEAVYAVQRVVEGRGYPK
VPKDGGDPLLEKLFHGLYGADVLDENAFTGWRDDDREEGNKRKAVVQTTP
WFQWLETAEEEEEEEEDDIEELNNI* back to topmRNA from alignment at chr11:662713..665581- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02070.1 ID=NO11G02070.1|Name=NO11G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2869bp|location=Sequence derived from alignment at chr11:662713..665581- (Nannochloropsis oceanica)
GGTCTCTATGCCAGCATTCCCCCCTTGCGTGAAGCACACATCGCTTGGTC
GAATGAATCCTTGTATTGGTAGTGTGCCTCGTCTCGTGGTTTTATTTGAT
CTTCAGCACTGCGCAATGATTATGCTCTTCCCAAGCCTTCCAATCCACCC
ACAGGCTTTTTTTTGGTGGGTGCGTGTGTGGCTCTCGAGCGACTCATGCT
TCTTCCTTCATTTGCGAATGCCCCACCGTAATAAGCCAGCAATGAGGGCT
GATCACCATACCACACCACGTATTGGTTCTCCAAAGAGATGTCCTCAGTG
TATGCCCTCCTATATCCCCTCCGTTCACCATCCCATAGGCGCAGCAGCAC
ATTCGCAGCCGCCCACCTCAAAACACGAGTACTGAAAGGAGCAGGGTCTC
AAGCACCTCGTCTCCTTCTACGAAAACTTTCGACAAACAAAAAGCAAACA
AGCAAGCAAGCAACACCTGCAACATGTCTAAAAAAGGTACCAAGCTTTCC
CTTGGGGACTTCCAAAAGCTGAGCGGGGCCGTGGACAGGAACCCTCTGCC
TACCGGACCATCTGGCCGTTCGTCTGAGGATGGTCATCGGGGCGAAGGCC
GTCGCGGAGGAGGGAGAGGCGGCGGCGGTGGCTTCCGTGATCGCGATCGT
GGAGATCGTGAAGGGGGCAGTAATTCGGATGGAAGCTGGTCAAGGGGTGG
TGGCGCAGGGGGAGGTTTCGAGGACCGTGGAGGTTTTCGTGAAAGAGGAG
GAGGGGGACGTTTTGGAGATGATGACCGGGGCCCACCTCGCAGGGGAGGT
TTTGGGGATGATGAACGAGGCCCGCCTAGGTCAAGGGCCGATGACGGGCC
GTGGACTCGAGGAGGAGGAGACGACGACTTTGATCGTGCCCCGCCCCGTC
GTCGCGAGGGTATGGGTGGTGGAGGGAGGGAAGGAGGGGAAGGTGGGGCG
GACGACAACACGCCGACGAATTGGCGGGGACAGGGAGGAAGAGCGGGAGG
GGGGGAGGACATAGGCCCGCCTCGACGCGGGTATGATGGGCCTGCGGAGA
GGCCGCGGTTGAACCTAAAGCCGAGGAGTACTGCTGGTCCAGGGGGGGAG
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAATAGCTTGTTTGGGGGTGC
CAAACCTGTTGATACGGCGGCAAGAGAGGAGGAGATTTTGACGCGGAAAT
TGGACAAGGTGAGGGTGGGAGGGGAGGAGGGAGTGGAGGAAGGAGGGGAA
GGTCCCGCTGCCGAGTCTCAGGAAGGAGGGAATGAGAGCACACCTGCTGC
TCCTGCTGCTGCTCTTGGGATCGAGTCTATGACTGAGGGAGGAGAGGCTG
AGACGAAGAAGGAGAAGGAGCAGCGGTGGGGAGGGGATAAGCCGGAGGGT
GAGGAGGAAGGGAGGGAGGGAGCGACGGTCCGACCCGTGCCTCGACGACG
ACCAACGCCTGAGCCTGCCCCCCGAAATATGAGATGGAAGGAGGACGGGC
CGGGGGAGGGAGGGAGAGAGGAAGGAAGACGGATGGGAGGGGGAGAGAAG
GAGCTGGGCAATGGACGTGGAGGAGGGATGGACCGAGGGATGGGGGGAGG
GCGGGGTGGTGGAGGAGGAGGGTTCGGTGGGGGCTATGGAAGGAAGGATG
ACATGGAAGCGGGAGGAAGAGATGGAGGGCGGGGTGGTGGAGGGGGAGGG
TTCGGTGGGGGCTATGGAAGGAGGGACCGAGATCGTGAGGGAGGAGATGA
CTATAGGCGGAGGGATGGGGAGGGTTTCGGGGGGGCTAGACGAGATGGAG
GCAGCAGGGAAGGAGGAAGGTTGGGAGATGACTATCCTCGACGGGGTGGA
TGGGAGGAAGAGCGTGGGGAGCTACGTCGGGAGGTAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAG
GAGGAGGAGGAGGAGAGGAGGGAGGCGGAGTGCCGGAACGTCGTCCTTTG
CGGCGGTTCGCGCCTTCGGGGGGGGAAGATTTGTCGAGGCCACGTCGGTT
TGAAGAAAGGTGGGACTCACGTACCCCCCCCCCATATGGGAGTAGGGGAA
GTAGCCCTGCGTTGTCTTCTGGTGGAGGAGGAGGAGGAGGAGGGGGGGAG
GAGGAGGAGGAGGAAGAGGAGGGGAAGGAGCGAACGCGGCTATCAAGGCT
GTAGCTGCTGCGGCGAAGGCGGCAGAGCAGGAGGAGAAGAAGTTGAAGAA
GGAGTCAGAGGCCGCGAAGCGTCAAGCAGAAGAGGAAGCCCGCCGCGCTG
CGAAGGAAGAGCAGGTTTTGCGGTTGAAGAGGGAAAAGGAGGCTCAGGTA
GCAGCAGCAGCAGAAGCAGCATTGATTGCCAAGGATTTGGTGGCTGGCGG
GCTCAAGGGCAAGGAGCTGCTGGCGGCCGTGAAGGAGAAGGGGGCATCGG
TGAAGGGCTCGGCCTTGTTGGGCGAGGTATTGTCGGTGCAAGGGTCGGAC
GAGGCGTTGGCAGGCTTGGGATGGATGGCCGGCAAGGAGTATGGAATGGC
GTTGTTGGGCTTGTTGAGGGGAAACGTGGAGGATCAGAAGGAGGCGGTGT
ATGCGGTGCAGAGAGTTGTGGAGGGAAGGGGGTATCCCAAGGTGCCGAAG
GATGGAGGGGATCCGTTGTTGGAGAAGCTGTTTCATGGGCTGTATGGCGC
AGACGTGCTGGATGAGAATGCCTTCACAGGGTGGAGAGATGATGACAGAG
AGGAAGGGAATAAGCGCAAGGCGGTTGTGCAGACCACGCCGTGGTTTCAG
TGGTTAGAAACGGCGGAGGAGGAGGAGGAGGAGGAGGAGGATGATATCGA
GGAGCTGAATAATATCTAA back to topCoding sequence (CDS) from alignment at chr11:662713..665581- >NO11G02070.1 ID=NO11G02070.1|Name=NO11G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at chr11:662713..665581- (Nannochloropsis oceanica)
ATGTCTAAAAAAGGTACCAAGCTTTCCCTTGGGGACTTCCAAAAGCTGAG
CGGGGCCGTGGACAGGAACCCTCTGCCTACCGGACCATCTGGCCGTTCGT
CTGAGGATGGTCATCGGGGCGAAGGCCGTCGCGGAGGAGGGAGAGGCGGC
GGCGGTGGCTTCCGTGATCGCGATCGTGGAGATCGTGAAGGGGGCAGTAA
TTCGGATGGAAGCTGGTCAAGGGGTGGTGGCGCAGGGGGAGGTTTCGAGG
ACCGTGGAGGTTTTCGTGAAAGAGGAGGAGGGGGACGTTTTGGAGATGAT
GACCGGGGCCCACCTCGCAGGGGAGGTTTTGGGGATGATGAACGAGGCCC
GCCTAGGTCAAGGGCCGATGACGGGCCGTGGACTCGAGGAGGAGGAGACG
ACGACTTTGATCGTGCCCCGCCCCGTCGTCGCGAGGGTATGGGTGGTGGA
GGGAGGGAAGGAGGGGAAGGTGGGGCGGACGACAACACGCCGACGAATTG
GCGGGGACAGGGAGGAAGAGCGGGAGGGGGGGAGGACATAGGCCCGCCTC
GACGCGGGTATGATGGGCCTGCGGAGAGGCCGCGGTTGAACCTAAAGCCG
AGGAGTACTGCTGGTCCAGGGGGGGAGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGGAATAGCTTGTTTGGGGGTGCCAAACCTGTTGATACGGCGGCAA
GAGAGGAGGAGATTTTGACGCGGAAATTGGACAAGGTGAGGGTGGGAGGG
GAGGAGGGAGTGGAGGAAGGAGGGGAAGGTCCCGCTGCCGAGTCTCAGGA
AGGAGGGAATGAGAGCACACCTGCTGCTCCTGCTGCTGCTCTTGGGATCG
AGTCTATGACTGAGGGAGGAGAGGCTGAGACGAAGAAGGAGAAGGAGCAG
CGGTGGGGAGGGGATAAGCCGGAGGGTGAGGAGGAAGGGAGGGAGGGAGC
GACGGTCCGACCCGTGCCTCGACGACGACCAACGCCTGAGCCTGCCCCCC
GAAATATGAGATGGAAGGAGGACGGGCCGGGGGAGGGAGGGAGAGAGGAA
GGAAGACGGATGGGAGGGGGAGAGAAGGAGCTGGGCAATGGACGTGGAGG
AGGGATGGACCGAGGGATGGGGGGAGGGCGGGGTGGTGGAGGAGGAGGGT
TCGGTGGGGGCTATGGAAGGAAGGATGACATGGAAGCGGGAGGAAGAGAT
GGAGGGCGGGGTGGTGGAGGGGGAGGGTTCGGTGGGGGCTATGGAAGGAG
GGACCGAGATCGTGAGGGAGGAGATGACTATAGGCGGAGGGATGGGGAGG
GTTTCGGGGGGGCTAGACGAGATGGAGGCAGCAGGGAAGGAGGAAGGTTG
GGAGATGACTATCCTCGACGGGGTGGATGGGAGGAAGAGCGTGGGGAGCT
ACGTCGGGAGGTAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAGGGA
GGCGGAGTGCCGGAACGTCGTCCTTTGCGGCGGTTCGCGCCTTCGGGGGG
GGAAGATTTGTCGAGGCCACGTCGGTTTGAAGAAAGGAGGAGGAGGAGGA
GGGGGGGAGGAGGAGGAGGAGGAAGAGGAGGGGAAGGAGCGAACGCGGCT
ATCAAGGCTGTAGCTGCTGCGGCGAAGGCGGCAGAGCAGGAGGAGAAGAA
GTTGAAGAAGGAGTCAGAGGCCGCGAAGCGTCAAGCAGAAGAGGAAGCCC
GCCGCGCTGCGAAGGAAGAGCAGGTTTTGCGGTTGAAGAGGGAAAAGGAG
GCTCAGGTAGCAGCAGCAGCAGAAGCAGCATTGATTGCCAAGGATTTGGT
GGCTGGCGGGCTCAAGGGCAAGGAGCTGCTGGCGGCCGTGAAGGAGAAGG
GGGCATCGGTGAAGGGCTCGGCCTTGTTGGGCGAGGTATTGTCGGTGCAA
GGGTCGGACGAGGCGTTGGCAGGCTTGGGATGGATGGCCGGCAAGGAGTA
TGGAATGGCGTTGTTGGGCTTGTTGAGGGGAAACGTGGAGGATCAGAAGG
AGGCGGTGTATGCGGTGCAGAGAGTTGTGGAGGGAAGGGGGTATCCCAAG
GTGCCGAAGGATGGAGGGGATCCGTTGTTGGAGAAGCTGTTTCATGGGCT
GTATGGCGCAGACGTGCTGGATGAGAATGCCTTCACAGGGTGGAGAGATG
ATGACAGAGAGGAAGGGAATAAGCGCAAGGCGGTTGTGCAGACCACGCCG
TGGTTTCAGTGGTTAGAAACGGCGGAGGAGGAGGAGGAGGAGGAGGAGGA
TGATATCGAGGAGCTGAATAATATCTAA back to top
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