NO11G02020.1, NO11G02020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02020.1
Unique NameNO11G02020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1359
Alignment locationchr11:646776..648299 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:646776..648299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02020.1 vs.
Match: XP_005852493.1 (H/ACA ribonucleoprotein complex subunit 1, partial [Nannochloropsis gaditana CCMP526]; EKU23341.1 H/ACA ribonucleoprotein complex subunit 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 241.1 bits (614), Expect = 3.100e-60
Identity = 133/149 (89.26%), Postives = 140/149 (93.96%), Query Frame = 0 
Query:    1 MRPPMHRGGGRGPPGRGGGGFRGGRGGGGGGRYGPGRGYDEGPPEQVVEAGSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGGGGGRGGGRGGGR 150
            MRPPMHRGGGRGPPGRGGG FRGGRGGGG  R+G GRGYDEGPPEQVVEAG+F+HEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPD+GVSAKSFK +DK+YIGTDKLLPL+RFT  GGGGG G GRGGGR
Sbjct:    1 MRPPMHRGGGRGPPGRGGG-FRGGRGGGG--RFGSGRGYDEGPPEQVVEAGAFVHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGGGGG-GRGRGGGR 145
The following BLAST results are available for this feature:
BLAST of NO11G02020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852493.13.100e-6089.26H/ACA ribonucleoprotein complex subunit 1, partial... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02020NO11G02020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02020.1NO11G02020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02020.1.cds1NO11G02020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02020.1.cds2NO11G02020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02020.1 ID=NO11G02020.1|Name=NO11G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
CTGTGAATTGTGTGCGTTGTTGCGTGTGTTGGAAACGGTGAGACTTCGTG
AGAATTTTAAGTAGACTCACGCCAATGCTCTTGGAGGGTGAAGGGTCGCT
CAAGTGCGTGTTTGTATCACGCAAAAGGGGGAGGAATAAGAAGCAATGCG
GGCCATGTGCATTGCTTGGTGGAGGAAGGTCTCCACTGGCAAGTGATCGC
CGTCTTATGCATCAAACCCCTTAAGCCTAGTAAACACAACGGGCATCGGG
CTCATCACCATGGTACATACAGGCACAAATATCTGGAGACTGCCGTGGGA
TGGTCATTGCGCTTACTTTTGGTTTCTTGTTGGTAGCTTGCATCGAAACC
TTCCCAACCACTCTGCACCCACTCCCTCTCTTCCTTCATTCATCAAAATA
AGGATACCAACACCCTTTGACCCACCCTTCACCTTCCAGGGCACACAATG
CGACCCCCCATGCATCGGGGTGGTGGTCGTGGACCTCCGGGGCGCGGCGG
TGGAGGTTTCCGGGGCGGACGAGGCGGTGGCGGCGGTGGACGTTATGGTC
CCGGTCGAGGCTATGATGAGGGCCCTCCGGAGCAAGTGGTGGAGGCCGGG
TCGTTCATGCACGAGGTTGAGGGCGAGATGCTCATCAAGCTGACCAATGA
AAACATTCCTTATTTCAACGCCGGGATTTTTTTGGAAAACAAGACGCGGG
TGGGGAAGGTGGAGGAGGTATTGGGGCCCATTAATCAGGTGTATTTCACT
GTTAAACCGGACTCTGGCGTGTCTGCCAAATCTTTCAAGCCTGATGACAA
GGTCTACATTGGCACCGATAAACTCTTGCCCCTTGCCCGCTTTACAAGCA
GTGGTGGTGGAGGAGGAAGAGGAGGCGGACGAGGAGGAGGACGAGGAGGA
GGACGAGGTGGGGGAAGGGGGGGGGTTGGCGCGGCGCGTGGTGGCGGTTT
CGGGGGAAGGGGAGGAGGGAGGGGGTTCGGAGGAGGAAGGAGCTTTGGAG
GGGGAGGTAGGGGAGGAGGGTTTTCATCACGGGGACGGGGGCCGCCGCGA
GGTGGAGGGTTTAGGGGAGGCGGGGGAAGGGGTCGGTTTTAAGCGAGAAA
AAGGATGGTATTTATGTGTGTATGTGTGCGTGAGTGTACGCAGCCGAGTG
AGGAGGCGTGACAAGCCAGAGAGAAATGAGATACAGGGATTGAGAAAATG
AAGGGGAAAAGAGAGTGTGTGCATGATGCAGCTTGTGGCCTCCGTGTATT
TAAAGAAGCATGACCCCACAAAAAGACATGCCAAAAAAATGAAGTAAAAC
GAGCAGGATACTTAAAAACTGCCTTGGTGTGACGCCACATTATTCTTAAG
AATTTACAG
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protein sequence of NO11G02020.1

>NO11G02020.1-protein ID=NO11G02020.1-protein|Name=NO11G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MRPPMHRGGGRGPPGRGGGGFRGGRGGGGGGRYGPGRGYDEGPPEQVVEA
GSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYF
TVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGGGGGRGGGRGGGRG
GGRGGGRGGVGAARGGGFGGRGGGRGFGGGRSFGGGGRGGGFSSRGRGPP
RGGGFRGGGGRGRF*
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mRNA from alignment at chr11:646776..648299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02020.1 ID=NO11G02020.1|Name=NO11G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp|location=Sequence derived from alignment at chr11:646776..648299+ (Nannochloropsis oceanica)
CTGTGAATTGTGTGCGTTGTTGCGTGTGTTGGAAACGGTGAGACTTCGTG
AGAATTTTAAGTAGACTCACGCCAATGCTCTTGGAGGGTGAAGGGTCGCT
CAAGTGCGTGTTTGTATCACGCAAAAGGGGGAGGAATAAGAAGCAATGCG
GGCCATGTGCATTGCTTGGTGGAGGAAGGTCTCCACTGGCAAGTGATCGC
CGTCTTATGCATCAAACCCCTTAAGCCTAGTAAACACAACGGGCATCGGG
CTCATCACCATGGTACATACAGGCACAAATATCTGGAGACTGCCGTGGGA
TGGTCATTGCGCTTACTTTTGGTTTCTTGTTGGTAGCTTGCATCGAAACC
TTCCCAACCACTCTGCACCCACTCCCTCTCTTCCTTCATTCATCAAAATA
AGGATACCAACACCCTTTGACCCACCCTTCACCTTCCAGGGCACACAATG
CGACCCCCCATGCATCGGGGTGGTGGTCGTGGACCTCCGGGGCGCGGCGG
TGGAGGTTTCCGGGGCGGACGAGGTAAGCTATTTAATTGTCAACCTACCC
CCATCCCCCTGCCCCTCCCCCATCCCTCTTCCCCTATCCTCATCCCCCTC
CTTCTATCCCCCTTTCCTTCCCCTTCTCATCTCTTTTTCTGGCTTCCTCT
ACCCCATCTCTTTTTTTTGGCTTCCTCTACACCAATAGGCGGTGGCGGCG
GTGGACGTTATGGTCCCGGTCGAGGCTATGATGAGGGCCCTCCGGAGCAA
GTGGTGGAGGCCGGGTCGTTCATGCACGAGGTTGAGGGCGAGATGCTCAT
CAAGCTGACCAATGAAAACATTCCTTATTTCAACGCCGGGATTTTTTTGG
AAAACAAGACGCGGGTGGGGAAGGTGGAGGAGGTATTGGGGCCCATTAAT
CAGGTGTATTTCACTGTTAAACCGGACTCTGGCGTGTCTGCCAAATCTTT
CAAGCCTGATGACAAGGTCTACATTGGCACCGATAAACTCTTGCCCCTTG
CCCGCTTTACAAGCAGTGGTGGTGGAGGAGGAAGAGGAGGCGGACGAGGA
GGAGGACGAGGAGGAGGACGAGGTGGGGGAAGGGGGGGGGTTGGCGCGGC
GCGTGGTGGCGGTTTCGGGGGAAGGGGAGGAGGGAGGGGGTTCGGAGGAG
GAAGGAGCTTTGGAGGGGGAGGTAGGGGAGGAGGGTTTTCATCACGGGGA
CGGGGGCCGCCGCGAGGTGGAGGGTTTAGGGGAGGCGGGGGAAGGGGTCG
GTTTTAAGCGAGAAAAAGGATGGTATTTATGTGTGTATGTGTGCGTGAGT
GTACGCAGCCGAGTGAGGAGGCGTGACAAGCCAGAGAGAAATGAGATACA
GGGATTGAGAAAATGAAGGGGAAAAGAGAGTGTGTGCATGATGCAGCTTG
TGGCCTCCGTGTATTTAAAGAAGCATGACCCCACAAAAAGACATGCCAAA
AAAATGAAGTAAAACGAGCAGGATACTTAAAAACTGCCTTGGTGTGACGC
CACATTATTCTTAAGAATTTACAG
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Coding sequence (CDS) from alignment at chr11:646776..648299+

>NO11G02020.1 ID=NO11G02020.1|Name=NO11G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at chr11:646776..648299+ (Nannochloropsis oceanica)
ATGCGACCCCCCATGCATCGGGGTGGTGGTCGTGGACCTCCGGGGCGCGG
CGGTGGAGGTTTCCGGGGCGGACGAGGCGGTGGCGGCGGTGGACGTTATG
GTCCCGGTCGAGGCTATGATGAGGGCCCTCCGGAGCAAGTGGTGGAGGCC
GGGTCGTTCATGCACGAGGTTGAGGGCGAGATGCTCATCAAGCTGACCAA
TGAAAACATTCCTTATTTCAACGCCGGGATTTTTTTGGAAAACAAGACGC
GGGTGGGGAAGGTGGAGGAGGTATTGGGGCCCATTAATCAGGTGTATTTC
ACTGTTAAACCGGACTCTGGCGTGTCTGCCAAATCTTTCAAGCCTGATGA
CAAGGTCTACATTGGCACCGATAAACTCTTGCCCCTTGCCCGCTTTACAA
GCAGTGGTGGTGGAGGAGGAAGAGGAGGCGGACGAGGAGGAGGACGAGGA
GGAGGACGAGGTGGGGGAAGGGGGGGGGTTGGCGCGGCGCGTGGTGGCGG
TTTCGGGGGAAGGGGAGGAGGGAGGGGGTTCGGAGGAGGAAGGAGCTTTG
GAGGGGGAGGTAGGGGAGGAGGGTTTTCATCACGGGGACGGGGGCCGCCG
CGAGGTGGAGGGTTTAGGGGAGGCGGGGGAAGGGGTCGGTTTTAA
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Synonyms
Publications