NO11G02010.1, NO11G02010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G02010.1
Unique NameNO11G02010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1759
Alignment locationchr11:645362..647235 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:645362..647235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G02010.1 vs.
Match: EWM25012.1 (hypothetical protein Naga_100068g10 [Nannochloropsis gaditana])

HSP 1 Score: 196.8 bits (499), Expect = 1.200e-46
Identity = 172/386 (44.56%), Postives = 229/386 (59.33%), Query Frame = 0 
Query:    1 MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKKTDDDLPKNGLYAYFVRAGHSGYKKWGED--AEEKEEEENRSSTLANDGDSSSKNKKKKNRKTEKERNTNKRKDLELTEAEEREEGEPSKKRRRKSAKEEDEEEEEEKVPQNPQAGDATTTSTSPDKAFPWVKNIKRVLKETEEKKLCLRKLRKQVVGAAAAAATAAAPSASVDNKKSKKVLTQAFHLVLDTHDLLHVQDGVVHYLRKKKDRKGGEVGKEEEEEEENEEEEEEREKKGKKEMAKYVKSTTKKKKNLVEKKIKKGMKSDTLMKDEKVE-QDEEAVVEKEKKNEKRKATFVKEEVKEEDKEEGGLVVVGKKTKREKKEAKEEKKKKEEAAAL--LVKASKKQKK 382
            MED+RMQRLHDTL+KLRPRGKTGGLGF+SGFGPKKTDD LPKNGLYAYFVRAGH GYKKWG+D  AE K E E  SS          K K+KK ++++ E  + KRKD+ LT +E++E GEP +KRRR+      EE    +  QNPQAGDAT      D  F W K+IKRVLK  EE K+ LR+LRKQVV  A    ++     SV   +SKK L  AFH  +DTHDLLHV+DGVVHY   +K   G   G++       + +     KKG   M     S T++++    +K + G  + +    ++VE  + +  + K +  E+       +++   D+ E       KK K+ KK +  E++KK+EA ++    KAS K+ K
Sbjct:    1 MEDDRMQRLHDTLDKLRPRGKTGGLGFNSGFGPKKTDDGLPKNGLYAYFVRAGHGGYKKWGDDDIAEVKPESEGESSLPVR--GYIKKEKRKKEKRSKGEDASKKRKDILLTASEKQEGGEPPRKRRRQRL----EEAVSWEALQNPQAGDATVAG---DIKFSWHKHIKRVLKAAEENKVPLRQLRKQVVALALERTSSRTAKGSVAGTQSKKALKHAFHRAVDTHDLLHVEDGVVHYRNAEKAVGGAAYGRQ-------KHDVVTAAKKGAFAMKGEGGSDTEEQREQKRRKSRSGGNNKSAKAVDRVEIAERKKSLSKAESTERLSTEAAGKDIAFADRAE-------KKKKKNKKGSALEEEKKKEATSMNEAKKASGKRNK 363
The following BLAST results are available for this feature:
BLAST of NO11G02010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25012.11.200e-4644.56hypothetical protein Naga_100068g10 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G02010NO11G02010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G02010.1NO11G02010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G02010.1.cds1NO11G02010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G02010.1.cds2NO11G02010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G02010.1 ID=NO11G02010.1|Name=NO11G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1759bp
TGGGGGGTCGCATTGTGTGCCCTGGAAGGTGAAGGGTGGGTCAAAGGGTG
TTGGTATCCTTATTTTGATGAATGAAGGAAGAGAGGGAGTGGGTGCAGAG
TGGTTGGGAAGGTTTCGATGCAAGCTACCAACAAGAAACCAAAAGTAAGC
GCAATGACCATCCCACGGCAGTCTCCAGATATTTGTGCCTGTATGTACCA
TGGTGATGAGCCCGATGCCCGTTGTGTTTACTAGGCTTAAGGGGTTTGAT
GCATAAGACGGCGATCACTTGCCAGTGGAGACCTTCCTCCACCAAGCAAT
GCACATGGCCCGCATTGCTTCTTATTCCTCCCCCTTTTGCGTGATACAAA
CACGCACTTGAGCGACCCTTCACCCTCCAAGAGCATTGGCGTGAGTCTAC
TTAAAATTCTCACGAAGTCTCACCGTTTCCAACACACGCAACAACGCACA
CAATTCACAGCTCGATCAGCGGCCTCTACACCAGCAGCTAAGCCTACTTG
ACCATGGAAGACGAGCGCATGCAGCGTCTTCACGACACGCTCGAGAAGCT
CCGACCCCGAGGCAAGACGGGAGGCCTGGGCTTCAGTTCAGGCTTTGGGC
CCAAGAAGACTGACGACGACTTACCCAAGAATGGTTTGTACGCATATTTT
GTCCGCGCAGGACATAGTGGGTATAAGAAATGGGGAGAGGATGCAGAGGA
GAAGGAGGAGGAGGAGAATAGGAGCAGCACCTTGGCTAATGATGGCGATA
GCAGCAGCAAGAATAAAAAGAAGAAGAACAGGAAGACGGAAAAGGAGCGA
AACACCAATAAGCGCAAGGATTTGGAGTTGACAGAAGCGGAGGAGAGGGA
GGAAGGGGAGCCGTCTAAGAAGAGGCGGCGTAAGAGCGCCAAGGAGGAAG
ACGAAGAGGAAGAGGAAGAGAAGGTACCGCAAAATCCTCAAGCTGGCGAT
GCCACCACAACATCCACATCACCAGACAAGGCCTTTCCCTGGGTGAAGAA
CATCAAGAGGGTGCTGAAAGAGACGGAGGAGAAGAAACTTTGTTTGAGGA
AGCTCCGGAAGCAAGTGGTAGGAGCAGCAGCAGCTGCAGCAACAGCCGCA
GCACCATCGGCGTCAGTCGACAATAAAAAAAGCAAGAAGGTTTTGACGCA
GGCGTTTCATTTGGTCCTTGACACGCATGACTTGTTGCATGTACAGGATG
GGGTGGTTCATTATCTGAGGAAGAAAAAGGACAGGAAAGGAGGTGAGGTG
GGAAAGGAGGAAGAGGAGGAGGAAGAGAACGAGGAGGAGGAGGAAGAGAG
GGAGAAGAAAGGGAAGAAGGAGATGGCGAAGTATGTGAAGTCGACGACAA
AGAAAAAGAAAAATTTGGTCGAGAAGAAGATAAAGAAGGGGATGAAAAGC
GACACGCTGATGAAGGACGAAAAGGTGGAGCAGGATGAAGAGGCGGTGGT
GGAGAAGGAGAAAAAAAACGAGAAACGCAAGGCCACGTTTGTGAAGGAGG
AAGTGAAAGAGGAAGACAAAGAGGAGGGAGGATTGGTGGTTGTAGGAAAG
AAGACCAAACGGGAGAAAAAGGAAGCCAAGGAGGAGAAGAAGAAGAAGGA
GGAGGCAGCTGCACTTCTTGTGAAGGCGTCTAAGAAGCAGAAGAAGAAGA
AGGGAAGCAAAGCCTAGAGCATGAAGTTATTTCTTAGATATTTGTAAAAA
AACTAGTTTCCAAATGCTCACCACCAGGAAAGAAACAACACCAACGACTG
CATGGCAGC
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protein sequence of NO11G02010.1

>NO11G02010.1-protein ID=NO11G02010.1-protein|Name=NO11G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MEDERMQRLHDTLEKLRPRGKTGGLGFSSGFGPKKTDDDLPKNGLYAYFV
RAGHSGYKKWGEDAEEKEEEENRSSTLANDGDSSSKNKKKKNRKTEKERN
TNKRKDLELTEAEEREEGEPSKKRRRKSAKEEDEEEEEEKVPQNPQAGDA
TTTSTSPDKAFPWVKNIKRVLKETEEKKLCLRKLRKQVVGAAAAAATAAA
PSASVDNKKSKKVLTQAFHLVLDTHDLLHVQDGVVHYLRKKKDRKGGEVG
KEEEEEEENEEEEEEREKKGKKEMAKYVKSTTKKKKNLVEKKIKKGMKSD
TLMKDEKVEQDEEAVVEKEKKNEKRKATFVKEEVKEEDKEEGGLVVVGKK
TKREKKEAKEEKKKKEEAAALLVKASKKQKKKKGSKA*
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mRNA from alignment at chr11:645362..647235-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G02010.1 ID=NO11G02010.1|Name=NO11G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1874bp|location=Sequence derived from alignment at chr11:645362..647235- (Nannochloropsis oceanica)
TGGGGGGTCGCATTGTGTGCCCTGGAAGGTGAAGGGTGGGTCAAAGGGTG
TTGGTATCCTTATTTTGATGAATGAAGGAAGAGAGGGAGTGGGTGCAGAG
TGGTTGGGAAGGTTTCGATGCAAGCTACCAACAAGAAACCAAAAGTAAGC
GCAATGACCATCCCACGGCAGTCTCCAGATATTTGTGCCTGTATGTACCA
TGGTGATGAGCCCGATGCCCGTTGTGTTTACTAGGCTTAAGGGGTTTGAT
GCATAAGACGGCGATCACTTGCCAGTGGAGACCTTCCTCCACCAAGCAAT
GCACATGGCCCGCATTGCTTCTTATTCCTCCCCCTTTTGCGTGATACAAA
CACGCACTTGAGCGACCCTTCACCCTCCAAGAGCATTGGCGTGAGTCTAC
TTAAAATTCTCACGAAGTCTCACCGTTTCCAACACACGCAACAACGCACA
CAATTCACAGCTCGATCAGCGGCCTCTACACCAGCAGCTAAGCCTACTTG
ACCATGGAAGACGAGCGCATGCAGCGTCTTCACGACACGCTCGAGAAGCT
CCGACCCCGAGGCAAGGTAAGATACAAGTTGGTGCCTGAGTGTGTCTCCA
TGTACCTTGTGTGTCCTACTTCACTCGGCGCCTCATCCTCCTCTCCCATA
CCCCACCCACACACATATAACCGAAATAAAGACGGGAGGCCTGGGCTTCA
GTTCAGGCTTTGGGCCCAAGAAGACTGACGACGACTTACCCAAGAATGGT
TTGTACGCATATTTTGTCCGCGCAGGACATAGTGGGTATAAGAAATGGGG
AGAGGATGCAGAGGAGAAGGAGGAGGAGGAGAATAGGAGCAGCACCTTGG
CTAATGATGGCGATAGCAGCAGCAAGAATAAAAAGAAGAAGAACAGGAAG
ACGGAAAAGGAGCGAAACACCAATAAGCGCAAGGATTTGGAGTTGACAGA
AGCGGAGGAGAGGGAGGAAGGGGAGCCGTCTAAGAAGAGGCGGCGTAAGA
GCGCCAAGGAGGAAGACGAAGAGGAAGAGGAAGAGAAGGTACCGCAAAAT
CCTCAAGCTGGCGATGCCACCACAACATCCACATCACCAGACAAGGCCTT
TCCCTGGGTGAAGAACATCAAGAGGGTGCTGAAAGAGACGGAGGAGAAGA
AACTTTGTTTGAGGAAGCTCCGGAAGCAAGTGGTAGGAGCAGCAGCAGCT
GCAGCAACAGCCGCAGCACCATCGGCGTCAGTCGACAATAAAAAAAGCAA
GAAGGTTTTGACGCAGGCGTTTCATTTGGTCCTTGACACGCATGACTTGT
TGCATGTACAGGATGGGGTGGTTCATTATCTGAGGAAGAAAAAGGACAGG
AAAGGAGGTGAGGTGGGAAAGGAGGAAGAGGAGGAGGAAGAGAACGAGGA
GGAGGAGGAAGAGAGGGAGAAGAAAGGGAAGAAGGAGATGGCGAAGTATG
TGAAGTCGACGACAAAGAAAAAGAAAAATTTGGTCGAGAAGAAGATAAAG
AAGGGGATGAAAAGCGACACGCTGATGAAGGACGAAAAGGTGGAGCAGGA
TGAAGAGGCGGTGGTGGAGAAGGAGAAAAAAAACGAGAAACGCAAGGCCA
CGTTTGTGAAGGAGGAAGTGAAAGAGGAAGACAAAGAGGAGGGAGGATTG
GTGGTTGTAGGAAAGAAGACCAAACGGGAGAAAAAGGAAGCCAAGGAGGA
GAAGAAGAAGAAGGAGGAGGCAGCTGCACTTCTTGTGAAGGCGTCTAAGA
AGCAGAAGAAGAAGAAGGGAAGCAAAGCCTAGAGCATGAAGTTATTTCTT
AGATATTTGTAAAAAAACTAGTTTCCAAATGCTCACCACCAGGAAAGAAA
CAACACCAACGACTGCATGGCAGC
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Coding sequence (CDS) from alignment at chr11:645362..647235-

>NO11G02010.1 ID=NO11G02010.1|Name=NO11G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr11:645362..647235- (Nannochloropsis oceanica)
ATGGAAGACGAGCGCATGCAGCGTCTTCACGACACGCTCGAGAAGCTCCG
ACCCCGAGGCAAGACGGGAGGCCTGGGCTTCAGTTCAGGCTTTGGGCCCA
AGAAGACTGACGACGACTTACCCAAGAATGGTTTGTACGCATATTTTGTC
CGCGCAGGACATAGTGGGTATAAGAAATGGGGAGAGGATGCAGAGGAGAA
GGAGGAGGAGGAGAATAGGAGCAGCACCTTGGCTAATGATGGCGATAGCA
GCAGCAAGAATAAAAAGAAGAAGAACAGGAAGACGGAAAAGGAGCGAAAC
ACCAATAAGCGCAAGGATTTGGAGTTGACAGAAGCGGAGGAGAGGGAGGA
AGGGGAGCCGTCTAAGAAGAGGCGGCGTAAGAGCGCCAAGGAGGAAGACG
AAGAGGAAGAGGAAGAGAAGGTACCGCAAAATCCTCAAGCTGGCGATGCC
ACCACAACATCCACATCACCAGACAAGGCCTTTCCCTGGGTGAAGAACAT
CAAGAGGGTGCTGAAAGAGACGGAGGAGAAGAAACTTTGTTTGAGGAAGC
TCCGGAAGCAAGTGGTAGGAGCAGCAGCAGCTGCAGCAACAGCCGCAGCA
CCATCGGCGTCAGTCGACAATAAAAAAAGCAAGAAGGTTTTGACGCAGGC
GTTTCATTTGGTCCTTGACACGCATGACTTGTTGCATGTACAGGATGGGG
TGGTTCATTATCTGAGGAAGAAAAAGGACAGGAAAGGAGGTGAGGTGGGA
AAGGAGGAAGAGGAGGAGGAAGAGAACGAGGAGGAGGAGGAAGAGAGGGA
GAAGAAAGGGAAGAAGGAGATGGCGAAGTATGTGAAGTCGACGACAAAGA
AAAAGAAAAATTTGGTCGAGAAGAAGATAAAGAAGGGGATGAAAAGCGAC
ACGCTGATGAAGGACGAAAAGGTGGAGCAGGATGAAGAGGCGGTGGTGGA
GAAGGAGAAAAAAAACGAGAAACGCAAGGCCACGTTTGTGAAGGAGGAAG
TGAAAGAGGAAGACAAAGAGGAGGGAGGATTGGTGGTTGTAGGAAAGAAG
ACCAAACGGGAGAAAAAGGAAGCCAAGGAGGAGAAGAAGAAGAAGGAGGA
GGCAGCTGCACTTCTTGTGAAGGCGTCTAAGAAGCAGAAGAAGAAGAAGG
GAAGCAAAGCCTAG
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Synonyms
Publications