NO11G01990.1, NO11G01990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01990.1
Unique NameNO11G01990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1062
Alignment locationchr11:642744..644129 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:642744..644129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01990NO11G01990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01990.1NO11G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01990.1.cds1NO11G01990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01990.1.cds2NO11G01990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01990.1.cds3NO11G01990.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01990.1.cds4NO11G01990.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01990.1 ID=NO11G01990.1|Name=NO11G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1062bp
ATGAGCTTGGGTTCTTCCTATTTGCCTCGTCGCCGCCGCCCTTCCCAGCC
CACGGCCCCTCCACTTCTCCACACATCCCAGGCCATACAGCTGACGTACA
GGAGCGCCTCTTTGGAGGTATCGATCTACGTTCGTCCCCTGCCCTCTCAA
TTCACCCCGTCCCTAGGCTGGGATGAACAGTGGGCCGCTCGGCGGGATCG
TTTGCGGCGACTCCCACCACGCGTCCCGCCCTCCCAGCTGCACCCACCAC
GAGCGCCCTTGGCGCCTCCCCCATCGTCGTCCTCATCCTCTAATTCTGCC
TCAACAGGCTTTTTGGTGCCCTACACAAATGAATTCCATCGTGTCACGAA
CTTCACCTCCTCCTTTACTGGCCTTTACCGTGATACGACCCTCTCCGGGG
TGGCCGTACACAATGAGCGGCTGCGACGTCACATGGCTATGCAAGAGAAT
CGTCTCGAACGACGACAGATGAAGTGCATTCAGATGCAGAGCCTGGCGGC
CAGGTATCAGCACCGAGCCGACCACCTGCGACAACAGCTGCGGGACGATC
GGCAACGAAAGTACACCTGCCTTGTCTCGGCCGTGCGGCGCCTCCAAGCC
GTCTTCCGTCTACAACAACACTTGCGGAGAAAGAAAGCAAAAGAGCTTTG
CGTTGCCAATGAGGCCGCAATGGTGGTTCAAGACTTTGGGAAGCGAGCTA
TGGCAATCGTAAATGCTAAAAAGGAGCTGGTTAGACTGGTACGCTGCAAG
GCTGCCGGTGCGGTCATTTTCACCTGGTGGAAATGTCGGTGGCAGGTCTT
GCAAGCCAAACGGTTGCGGCAGGCCCTACTTGTGGAGCGGCAACGGCAGA
AAGCCCAAGCTCGACTTAAGGTGGCCCTCTTTGGACAATCCCATTTCCGG
CGCCGACGAGACCATCGCTGGGTGGCGACAATGCGGCGTCGGAGGATGCA
GGAAGAAGCCTTGGCAGCAGCCGCAGCGGCAGCAGCATCAGCAGCATGGG
AGGAGGAGTTGGAACGGCGGCGGCGAAGGCGGAGGGAGCTGCATGACCGA
CCGTTTCGTTGA
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protein sequence of NO11G01990.1

>NO11G01990.1-protein ID=NO11G01990.1-protein|Name=NO11G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MSLGSSYLPRRRRPSQPTAPPLLHTSQAIQLTYRSASLEVSIYVRPLPSQ
FTPSLGWDEQWAARRDRLRRLPPRVPPSQLHPPRAPLAPPPSSSSSSNSA
STGFLVPYTNEFHRVTNFTSSFTGLYRDTTLSGVAVHNERLRRHMAMQEN
RLERRQMKCIQMQSLAARYQHRADHLRQQLRDDRQRKYTCLVSAVRRLQA
VFRLQQHLRRKKAKELCVANEAAMVVQDFGKRAMAIVNAKKELVRLVRCK
AAGAVIFTWWKCRWQVLQAKRLRQALLVERQRQKAQARLKVALFGQSHFR
RRRDHRWVATMRRRRMQEEALAAAAAAAASAAWEEELERRRRRRRELHDR
PFR*
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mRNA from alignment at chr11:642744..644129+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01990.1 ID=NO11G01990.1|Name=NO11G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1386bp|location=Sequence derived from alignment at chr11:642744..644129+ (Nannochloropsis oceanica)
ATGAGCTTGGGTTCTTCCTATTTGCCTCGTCGCCGCCGCCCTTCCCAGCC
CACGGCCCCTCCACTTCTCCACACATCCCAGGCCATACAGCTGACGTACA
GGAGCGCCTCTTTGGAGGTATCGATCTACGTTCGTCCCCTGCCCTCTCAA
TTCACCCCGTCCCTAGGCTGGGATGAACAGTGGGCCGCTCGGCGGGATCG
TTTGCGGCGACTCCCACCACGCGTCCCGCCCTCCCAGCTGCACCCACCAC
GAGCGCCCTTGGCGCCTCCCCCATCGTCGTCCTCATCCTCTAATTCTGCC
TCAACAGGCTTTTTGGTGCCCTACACAAATGAATTCCATCGTGTCACGGT
ATGTTCATTCCTACATGTCTCTTCAATCCCTGGTGCCTTTCCCTTCTCTG
TCATCATTTCCTCCAATCCTCCTCTCCAATCCTACAATAAACAAAAAGAA
CTTCACCTCCTCCTTTACTGGCCTTTACCGTGATACGACCCTCTCCGGGG
TGGCCGTACACAATGAGCGGCTGCGACGTCACATGGCTATGCAAGAGAAT
CGTCTCGAACGACGACAGATGAAGTGCATTCAGATGCAGAGCCTGGCGGC
CAGGTATCAGCACCGGTACGTGTAGTTTGCAGTGCACCTTCAAGGCTTTT
CGATGCATATACCGGATTTTTAAAATCGTAAGAATACAACAAACTTTCTT
GCTTTGTCATACACTATTCTAGAGCCGACCACCTGCGACAACAGCTGCGG
GACGATCGGCAACGAAAGTACACCTGCCTTGTCTCGGCCGTGCGGCGCCT
CCAAGCCGTCTTCCGTCTACAACAACACTTGCGGAGAAAGAAAGCAAAAG
AGCTTTGCGTTGCCAATGAGGCCGCAATGGTGGTTCAAGACTTTGGGAAG
CGAGCTATGGCAATCGTAAATGCTAAAAAGGAGCTGGTTAGACTGGTGCG
TGAGAGAGTGCCCGGGCAGTAGTGTATCGGTAGCTAAAGGTAGCTCCATC
TCACAAAAACTTCTCAATTCCCAACCCCCTCCCTCTTCAATTTTCTGACA
TAGAAATACCAGGTACGCTGCAAGGCTGCCGGTGCGGTCATTTTCACCTG
GTGGAAATGTCGGTGGCAGGTCTTGCAAGCCAAACGGTTGCGGCAGGCCC
TACTTGTGGAGCGGCAACGGCAGAAAGCCCAAGCTCGACTTAAGGTGGCC
CTCTTTGGACAATCCCATTTCCGGCGCCGACGAGACCATCGCTGGGTGGC
GACAATGCGGCGTCGGAGGATGCAGGAAGAAGCCTTGGCAGCAGCCGCAG
CGGCAGCAGCATCAGCAGCATGGGAGGAGGAGTTGGAACGGCGGCGGCGA
AGGCGGAGGGAGCTGCATGACCGACCGTTTCGTTGA
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Coding sequence (CDS) from alignment at chr11:642744..644129+

>NO11G01990.1 ID=NO11G01990.1|Name=NO11G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at chr11:642744..644129+ (Nannochloropsis oceanica)
ATGAGCTTGGGTTCTTCCTATTTGCCTCGTCGCCGCCGCCCTTCCCAGCC
CACGGCCCCTCCACTTCTCCACACATCCCAGGCCATACAGCTGACGTACA
GGAGCGCCTCTTTGGAGGTATCGATCTACGTTCGTCCCCTGCCCTCTCAA
TTCACCCCGTCCCTAGGCTGGGATGAACAGTGGGCCGCTCGGCGGGATCG
TTTGCGGCGACTCCCACCACGCGTCCCGCCCTCCCAGCTGCACCCACCAC
GAGCGCCCTTGGCGCCTCCCCCATCGTCGTCCTCATCCTCTAATTCTGCC
TCAACAGGCTTTTTGGTGCCCTACACAAATGAATTCCATCGTGTCACGAA
CTTCACCTCCTCCTTTACTGGCCTTTACCGTGATACGACCCTCTCCGGGG
TGGCCGTACACAATGAGCGGCTGCGACGTCACATGGCTATGCAAGAGAAT
CGTCTCGAACGACGACAGATGAAGTGCATTCAGATGCAGAGCCTGGCGGC
CAGGTATCAGCACCGAGCCGACCACCTGCGACAACAGCTGCGGGACGATC
GGCAACGAAAGTACACCTGCCTTGTCTCGGCCGTGCGGCGCCTCCAAGCC
GTCTTCCGTCTACAACAACACTTGCGGAGAAAGAAAGCAAAAGAGCTTTG
CGTTGCCAATGAGGCCGCAATGGTGGTTCAAGACTTTGGGAAGCGAGCTA
TGGCAATCGTAAATGCTAAAAAGGAGCTGGTTAGACTGGTACGCTGCAAG
GCTGCCGGTGCGGTCATTTTCACCTGGTGGAAATGTCGGTGGCAGGTCTT
GCAAGCCAAACGGTTGCGGCAGGCCCTACTTGTGGAGCGGCAACGGCAGA
AAGCCCAAGCTCGACTTAAGGTGGCCCTCTTTGGACAATCCCATTTCCGG
CGCCGACGAGACCATCGCTGGGTGGCGACAATGCGGCGTCGGAGGATGCA
GGAAGAAGCCTTGGCAGCAGCCGCAGCGGCAGCAGCATCAGCAGCATGGG
AGGAGGAGTTGGAACGGCGGCGGCGAAGGCGGAGGGAGCTGCATGACCGA
CCGTTTCGTTGA
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Synonyms
Publications