NO11G01940.1, NO11G01940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01940.1
Unique NameNO11G01940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1233
Alignment locationchr11:631477..632903 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:631477..632903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01940.1 vs.
Match: EWM25006.1 (aarF domain-containing protein kinase [Nannochloropsis gaditana])

HSP 1 Score: 585.9 bits (1509), Expect = 9.900e-164
Identity = 296/397 (74.56%), Postives = 330/397 (83.12%), Query Frame = 0 
Query:    1 MFSAALRMKPLACRTTVLGQQYAQRAPRAFKTF-HSKPV----PQRQAVRGRLCTTSKPITTFPPTKSPPTTTGTVAAAAGKSDKYMGLKIMGGVLGASGAFGGLFYYYAVEEDEALKRAMEDPSVALEPPPPEFVHPYIEKPWWWRMLFAIRRAFYVAYVFLPVAGVGVLSAYVFPESEVWRERFLTALIRAMEKAGCCFMKLGQWISMRPDMFSRDVVKTMARLRDGVPEHPFKFTEKTIRQSFKKEIGDVFEWFEETPIASGTVAQVYRARLKPEYAIHGTIQDVAVKVRHPNILNETFLDLDLIFGFVDSCFPEKYSMPCSQDELTHILRQQLDLKWEAYNLYKFSTNFRHELQSGLVHFPQVSKELCSDSVLVESWVEGATIATVFSDIEGG 393
            M S AL M+PL  RT V  +Q   R P A KT   + P+      R A R RL T SK  T    ++ PP+T    AAA  ++DKY+GLK+MGGVLGA    GG+ YYYAV ED ALK+AMEDPS+A+EPPPPEFVHPY+EKPWWWR LFAI RA YVA VFLPVAG+G++S Y+FP+S+ WRERFL ALIR ME+AGCCFMKLGQWISMRPDMF RDVVKTMARLRDGVP H FK T+++IR SF KEI D+FE FEETPIASGTVAQV+RARL+P YAIHG++QDVAVKVRHPNILNETFLDLDLIFGFVD+ FPEKYSMPCSQDELTHILRQQLDL+WEAYNLYKFSTNFRHELQSGLVHFPQVSKELCSDS+LVESWVEGATIATVFSDIEGG
Sbjct:    1 MLSGALNMRPLLGRTMVTSRQQLHRLPLAHKTTTQASPLLHLPRSRAAPRRRLTTDSKTSTGNSSSQKPPSTG---AAALKRADKYLGLKLMGGVLGACVGVGGIVYYYAVAEDRALKKAMEDPSIAVEPPPPEFVHPYLEKPWWWRALFAIGRAVYVASVFLPVAGMGLVSVYIFPDSKKWRERFLNALIRGMERAGCCFMKLGQWISMRPDMFPRDVVKTMARLRDGVPPHAFKHTQESIRVSFGKEIEDIFESFEETPIASGTVAQVHRARLRPAYAIHGSVQDVAVKVRHPNILNETFLDLDLIFGFVDTFFPEKYSMPCSQDELTHILRQQLDLQWEAYNLYKFSTNFRHELQSGLVHFPQVSKELCSDSILVESWVEGATIATVFSDIEGG 394
The following BLAST results are available for this feature:
BLAST of NO11G01940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25006.19.900e-16474.56aarF domain-containing protein kinase [Nannochloro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01940NO11G01940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01940.1NO11G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01940.1.cds1NO11G01940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01940.1.cds2NO11G01940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01940.1 ID=NO11G01940.1|Name=NO11G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp
ATGTTTAGTGCCGCTCTCCGAATGAAGCCGCTGGCTTGCCGGACAACGGT
CCTCGGCCAGCAGTATGCCCAGCGGGCGCCGCGAGCTTTCAAGACCTTCC
ACTCAAAACCCGTCCCGCAAAGACAAGCCGTCCGTGGACGCCTCTGTACA
ACCTCCAAACCTATCACCACTTTCCCTCCTACAAAAAGCCCGCCCACCAC
CACCGGCACTGTCGCTGCTGCTGCCGGCAAGTCCGACAAGTACATGGGGC
TCAAAATCATGGGAGGTGTGTTAGGCGCCTCGGGTGCTTTTGGCGGACTA
TTTTATTACTATGCTGTGGAAGAAGACGAGGCCTTGAAGCGAGCCATGGA
AGACCCCTCTGTCGCTTTGGAACCTCCTCCTCCGGAGTTCGTCCATCCTT
ACATCGAAAAACCGTGGTGGTGGCGCATGCTTTTTGCAATCCGCAGGGCT
TTTTACGTTGCCTATGTATTTCTGCCCGTCGCCGGGGTGGGGGTGCTCTC
GGCGTATGTATTCCCTGAGTCTGAGGTTTGGCGGGAGCGGTTTTTGACGG
CTCTGATTCGAGCGATGGAGAAGGCAGGATGTTGTTTCATGAAGTTGGGT
CAGTGGATAAGTATGCGCCCGGACATGTTCTCGCGAGATGTAGTCAAAAC
AATGGCGAGGTTAAGGGATGGTGTGCCAGAACACCCATTCAAATTTACGG
AGAAGACGATCAGGCAGAGTTTCAAAAAAGAGATTGGGGACGTCTTTGAG
TGGTTTGAAGAAACTCCCATCGCATCTGGGACGGTTGCGCAGGTGTACCG
TGCTCGGTTGAAGCCTGAGTATGCGATTCATGGCACTATCCAAGATGTGG
CTGTGAAAGTCCGCCATCCGAATATATTGAACGAGACATTCTTAGATCTC
GATTTGATATTCGGGTTTGTCGACTCCTGTTTCCCTGAGAAATATTCCAT
GCCCTGTTCCCAAGATGAGCTCACCCATATCTTGCGGCAGCAACTAGACT
TGAAATGGGAGGCGTACAATTTGTACAAATTTTCGACAAATTTCAGGCAC
GAGCTACAGTCAGGGTTAGTGCATTTTCCGCAGGTGAGTAAAGAGCTATG
CTCCGACTCGGTGTTGGTGGAGAGCTGGGTGGAGGGGGCGACAATTGCGA
CTGTCTTTTCGGATATCGAAGGGGGGGGGATCACACCTGGAGCGCGAGTA
AGACTCTTTCGGATAATTTCTCCGAGGCAGTGA
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protein sequence of NO11G01940.1

>NO11G01940.1-protein ID=NO11G01940.1-protein|Name=NO11G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MFSAALRMKPLACRTTVLGQQYAQRAPRAFKTFHSKPVPQRQAVRGRLCT
TSKPITTFPPTKSPPTTTGTVAAAAGKSDKYMGLKIMGGVLGASGAFGGL
FYYYAVEEDEALKRAMEDPSVALEPPPPEFVHPYIEKPWWWRMLFAIRRA
FYVAYVFLPVAGVGVLSAYVFPESEVWRERFLTALIRAMEKAGCCFMKLG
QWISMRPDMFSRDVVKTMARLRDGVPEHPFKFTEKTIRQSFKKEIGDVFE
WFEETPIASGTVAQVYRARLKPEYAIHGTIQDVAVKVRHPNILNETFLDL
DLIFGFVDSCFPEKYSMPCSQDELTHILRQQLDLKWEAYNLYKFSTNFRH
ELQSGLVHFPQVSKELCSDSVLVESWVEGATIATVFSDIEGGGITPGARV
RLFRIISPRQ*
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mRNA from alignment at chr11:631477..632903+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01940.1 ID=NO11G01940.1|Name=NO11G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1427bp|location=Sequence derived from alignment at chr11:631477..632903+ (Nannochloropsis oceanica)
ATGTTTAGTGCCGCTCTCCGAATGAAGCCGCTGGCTTGCCGGACAACGGT
CCTCGGCCAGCAGTATGCCCAGCGGGCGCCGCGAGCTTTCAAGGTATGTG
CTCAGAGACGACTGTGGGACACCTAGAATGCTGCCAGGATCATCGACACG
TGCCCCTTTTGCTGCAGCCTTTCTCATATCACTCCACGCTCCTCCTGTCG
AGTAACTACACATCGCTAATCATACTTATATTCCTTTCTCCTCAACTCCT
TTACCGCTCCCTCGCCCACTAATTATCAAACGTACAGACCTTCCACTCAA
AACCCGTCCCGCAAAGACAAGCCGTCCGTGGACGCCTCTGTACAACCTCC
AAACCTATCACCACTTTCCCTCCTACAAAAAGCCCGCCCACCACCACCGG
CACTGTCGCTGCTGCTGCCGGCAAGTCCGACAAGTACATGGGGCTCAAAA
TCATGGGAGGTGTGTTAGGCGCCTCGGGTGCTTTTGGCGGACTATTTTAT
TACTATGCTGTGGAAGAAGACGAGGCCTTGAAGCGAGCCATGGAAGACCC
CTCTGTCGCTTTGGAACCTCCTCCTCCGGAGTTCGTCCATCCTTACATCG
AAAAACCGTGGTGGTGGCGCATGCTTTTTGCAATCCGCAGGGCTTTTTAC
GTTGCCTATGTATTTCTGCCCGTCGCCGGGGTGGGGGTGCTCTCGGCGTA
TGTATTCCCTGAGTCTGAGGTTTGGCGGGAGCGGTTTTTGACGGCTCTGA
TTCGAGCGATGGAGAAGGCAGGATGTTGTTTCATGAAGTTGGGTCAGTGG
ATAAGTATGCGCCCGGACATGTTCTCGCGAGATGTAGTCAAAACAATGGC
GAGGTTAAGGGATGGTGTGCCAGAACACCCATTCAAATTTACGGAGAAGA
CGATCAGGCAGAGTTTCAAAAAAGAGATTGGGGACGTCTTTGAGTGGTTT
GAAGAAACTCCCATCGCATCTGGGACGGTTGCGCAGGTGTACCGTGCTCG
GTTGAAGCCTGAGTATGCGATTCATGGCACTATCCAAGATGTGGCTGTGA
AAGTCCGCCATCCGAATATATTGAACGAGACATTCTTAGATCTCGATTTG
ATATTCGGGTTTGTCGACTCCTGTTTCCCTGAGAAATATTCCATGCCCTG
TTCCCAAGATGAGCTCACCCATATCTTGCGGCAGCAACTAGACTTGAAAT
GGGAGGCGTACAATTTGTACAAATTTTCGACAAATTTCAGGCACGAGCTA
CAGTCAGGGTTAGTGCATTTTCCGCAGGTGAGTAAAGAGCTATGCTCCGA
CTCGGTGTTGGTGGAGAGCTGGGTGGAGGGGGCGACAATTGCGACTGTCT
TTTCGGATATCGAAGGGGGGGGGATCACACCTGGAGCGCGAGTAAGACTC
TTTCGGATAATTTCTCCGAGGCAGTGA
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Coding sequence (CDS) from alignment at chr11:631477..632903+

>NO11G01940.1 ID=NO11G01940.1|Name=NO11G01940.1|organism=Nannochloropsis oceanica|type=CDS|length=1233bp|location=Sequence derived from alignment at chr11:631477..632903+ (Nannochloropsis oceanica)
ATGTTTAGTGCCGCTCTCCGAATGAAGCCGCTGGCTTGCCGGACAACGGT
CCTCGGCCAGCAGTATGCCCAGCGGGCGCCGCGAGCTTTCAAGACCTTCC
ACTCAAAACCCGTCCCGCAAAGACAAGCCGTCCGTGGACGCCTCTGTACA
ACCTCCAAACCTATCACCACTTTCCCTCCTACAAAAAGCCCGCCCACCAC
CACCGGCACTGTCGCTGCTGCTGCCGGCAAGTCCGACAAGTACATGGGGC
TCAAAATCATGGGAGGTGTGTTAGGCGCCTCGGGTGCTTTTGGCGGACTA
TTTTATTACTATGCTGTGGAAGAAGACGAGGCCTTGAAGCGAGCCATGGA
AGACCCCTCTGTCGCTTTGGAACCTCCTCCTCCGGAGTTCGTCCATCCTT
ACATCGAAAAACCGTGGTGGTGGCGCATGCTTTTTGCAATCCGCAGGGCT
TTTTACGTTGCCTATGTATTTCTGCCCGTCGCCGGGGTGGGGGTGCTCTC
GGCGTATGTATTCCCTGAGTCTGAGGTTTGGCGGGAGCGGTTTTTGACGG
CTCTGATTCGAGCGATGGAGAAGGCAGGATGTTGTTTCATGAAGTTGGGT
CAGTGGATAAGTATGCGCCCGGACATGTTCTCGCGAGATGTAGTCAAAAC
AATGGCGAGGTTAAGGGATGGTGTGCCAGAACACCCATTCAAATTTACGG
AGAAGACGATCAGGCAGAGTTTCAAAAAAGAGATTGGGGACGTCTTTGAG
TGGTTTGAAGAAACTCCCATCGCATCTGGGACGGTTGCGCAGGTGTACCG
TGCTCGGTTGAAGCCTGAGTATGCGATTCATGGCACTATCCAAGATGTGG
CTGTGAAAGTCCGCCATCCGAATATATTGAACGAGACATTCTTAGATCTC
GATTTGATATTCGGGTTTGTCGACTCCTGTTTCCCTGAGAAATATTCCAT
GCCCTGTTCCCAAGATGAGCTCACCCATATCTTGCGGCAGCAACTAGACT
TGAAATGGGAGGCGTACAATTTGTACAAATTTTCGACAAATTTCAGGCAC
GAGCTACAGTCAGGGTTAGTGCATTTTCCGCAGGTGAGTAAAGAGCTATG
CTCCGACTCGGTGTTGGTGGAGAGCTGGGTGGAGGGGGCGACAATTGCGA
CTGTCTTTTCGGATATCGAAGGGGGGGGGATCACACCTGGAGCGCGAGTA
AGACTCTTTCGGATAATTTCTCCGAGGCAGTGA
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Synonyms
Publications