NO11G01900.1, NO11G01900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01900.1
Unique NameNO11G01900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2163
Alignment locationchr11:623536..625820 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:623536..625820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO11G01900.1 vs.
Match: EWM25027.1 (chloroplast sedoheptulose- -bisphosphatase [Nannochloropsis gaditana])

HSP 1 Score: 674.9 bits (1740), Expect = 1.500e-190
Identity = 330/375 (88.00%), Postives = 358/375 (95.47%), Query Frame = 0 
Query:    1 MKGAILLALVAPTLAFVPVKPVVPMAKTQSRSRAQTIMQMDPSVMPGLASTPGQPTVESWLMDNADKKLSKAVMGIFSACKEIAYKIRTASCDKMACFNEFGDEQLAIDILANNVLFQNLKDSGVVATASSEETPTEDPMGGEGFSVAFDPLDGSSIIDTNFAVGTIFGVWPGSRLTGITGRQLAASGIAVYGPRTTITFAIDGVDGAHEFLLVDDFTARHGQWIKTNTFTSIGEGKLFAPGNLRAIADNPGYNAMHSYWLENKYQLRYTGGMVPDVNQIMVKGKGVFVNPESPSAKAKLRLLYEVAPIGYMIEKAGGASSYGAGSVLDLNIYKTEDRTQVAYGSKDEVKRFEDMVGIKYASSHPDIVSQNAAHA 376
            MK ++LLALVAPT+AF+P+KPVVPMAK Q+R + QT MQ D   MPGLAS PGQPT+ESWL+DN++KKLSKAV+G+FSACKEIAYKIRTASCDKMACFNEFGDEQLAIDILANNVLFQNLKDSGVVATASSEETPTEDPMGGEG+SVAFDPLDGSSIIDTNFAVGTIFGVWPGSRLTGITGR+LAASGIAVYGPRTTITFAIDGV+GAHEFLLVDDFTARHGQWIKTNTFTSIGEGKL+APGNLRA  DNPGY+A+H YWL+NKYQLRYTGGMVPDVNQIMVKGKGVFVNPESPSAKAKLRLLYEVAPIGY+IEKAGGASSYGAGSVLDL +YKTEDRTQVAYGSKDEVKRFE+MVG K+A++HPD  ++NAAHA
Sbjct:    1 MKCSLLLALVAPTMAFIPMKPVVPMAKAQARVKGQTRMQAD---MPGLASAPGQPTIESWLLDNSEKKLSKAVLGLFSACKEIAYKIRTASCDKMACFNEFGDEQLAIDILANNVLFQNLKDSGVVATASSEETPTEDPMGGEGYSVAFDPLDGSSIIDTNFAVGTIFGVWPGSRLTGITGRELAASGIAVYGPRTTITFAIDGVEGAHEFLLVDDFTARHGQWIKTNTFTSIGEGKLYAPGNLRATNDNPGYDALHKYWLQNKYQLRYTGGMVPDVNQIMVKGKGVFVNPESPSAKAKLRLLYEVAPIGYVIEKAGGASSYGAGSVLDLKVYKTEDRTQVAYGSKDEVKRFEEMVGTKFATAHPDTAAKNAAHA 372
The following BLAST results are available for this feature:
BLAST of NO11G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25027.11.500e-19088.00chloroplast sedoheptulose- -bisphosphatase [Nannoc... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01900NO11G01900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01900.1NO11G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01900.1.cds1NO11G01900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01900.1.cds2NO11G01900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01900.1 ID=NO11G01900.1|Name=NO11G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp
TCGCTGCAGGAGTTGTAGAGGGCCGATTACAAGGTCCTGCCTGGCTTGGT
GACAAGGTTGTGTATGTTTATGTGAGTGTACCAGTGGCCTGCTTTACATC
AGGGCGTGGGGGACGTGTTTGCCTTGTGCGTGGCGCGTTTGGACAGGGTC
GGCTTCAGTTTGCCCGTTGTTGCAGTCCACAACCCTCCCTTGCTTCACCT
CTGCAGCAGATCTTCGGCCACACGCATGCATGCCTTGCCCTTCATGTTTG
TGTCACGGGCATGCTTGTTAAATGGCGGCGCCGTGGATTTCGGGTTGCGA
GAGTGTCAGTGGTGGTGTTCGACTGTCCAATCACTCACTTTGGCTCGTGG
TTGTAGGTCTCTGAAAACACTCCAGATGCTGGGCTCTTGTCTTCGCCCAC
GTCGACGTTCCTCCCGATCTATTATCGCGACTCTTTTCTATCCACATTAG
CACATGGTACAAACCCTAAGTCGTGATTGCGCCGTCAGGGACAACACCAA
GAGACTTCGCCGTCATGCCTGCCTACCCTGCCCAATTTATGCTCAGCCCT
TTGGCCACAGGGACCGCTTACTTGGCTCCAACCAAACATCAACCCTCCCT
CCCCCCCTTCTCTCCCATCTCAAAATAACATAGACAGAGTTATAAATTTA
CCATGAAGGGTGCTATCCTCCTCGCCTTGGTCGCTCCGACCTTGGCTTTC
GTCCCCGTCAAGCCTGTTGTGCCCATGGCCAAGACCCAGTCCCGTAGCAG
GGCGCAGACCATCATGCAGATGGATCCCTCGGTCATGCCCGGCCTTGCCT
CCACCCCGGGTCAACCCACAGTTGAGAGCTGGTTGATGGACAACGCCGAC
AAGAAGCTTTCCAAGGCCGTGATGGGCATCTTCTCCGCCTGCAAAGAGAT
CGCCTACAAGATCCGCACGGCGTCTTGTGACAAAATGGCGTGCTTCAACG
AGTTCGGTGACGAGCAGCTTGCCATTGACATCCTGGCCAACAACGTCCTC
TTCCAAAACCTCAAGGACTCCGGGGTGGTCGCCACGGCCTCCTCGGAGGA
AACCCCTACGGAGGATCCGATGGGGGGTGAGGGCTTCTCTGTGGCTTTTG
ATCCCCTCGATGGCTCTTCCATTATCGACACTAACTTTGCCGTGGGCACC
ATTTTCGGCGTGTGGCCCGGCTCCCGCCTGACTGGTATCACTGGACGACA
GCTCGCTGCATCCGGGATTGCTGTCTATGGACCCCGTACGACCATCACCT
TTGCGATTGATGGCGTGGATGGTGCGCACGAGTTTTTGCTGGTGGATGAC
TTCACTGCCCGCCACGGGCAGTGGATCAAGACCAACACATTTACCAGCAT
TGGGGAGGGCAAGCTTTTCGCCCCCGGGAACTTGCGGGCCATTGCCGATA
ACCCCGGCTACAACGCCATGCACTCGTACTGGTTGGAGAACAAATACCAG
CTTCGCTACACGGGCGGCATGGTGCCCGACGTGAACCAGATCATGGTCAA
GGGCAAGGGCGTGTTCGTCAACCCCGAGTCGCCCTCTGCCAAGGCCAAGC
TCCGCTTGCTGTACGAGGTGGCACCCATTGGATACATGATTGAGAAGGCC
GGCGGTGCATCTTCTTATGGCGCGGGTTCGGTGCTGGACTTGAACATTTA
CAAGACGGAGGACCGCACCCAGGTGGCATACGGAAGCAAGGATGAGGTGA
AGCGCTTTGAGGACATGGTGGGGATTAAGTATGCCTCCTCCCACCCGGAC
ATCGTTTCCCAGAATGCGGCGCACGCGTAAATCACGTCGAAAGGATGGAT
GGATGCGAGAAGAATGAGAAGTGACGATGCAATCGGAGGAGGGGGGTTGG
GGCTGGAGGGAGAGAGAGGGCAAGGTGGGGATGGGCGGATGGGGCTCTCG
TCACATGGCTCTCGGCATGCTGACGTGCAGTAGGGGTCAAGGGAACGATG
TGTGTTAGAGGTGCATGAGTGTATGTGAGTATAATCCTCATGTTCCTCGC
GTTGTTTCTCACTATATGTCATACTTGTCGTTGTTTTTCCAGACCCTTTA
CTCTTGTTGGTTGGCGTTTTTCTAACTACTGCGGAAGAACCAAGATGGGC
AAGAAACCAACCAAAAGAGAGCGAGCTTACTGAGATGCACAAACCTCAAA
AGCTGCGTTTTGG
back to top

protein sequence of NO11G01900.1

>NO11G01900.1-protein ID=NO11G01900.1-protein|Name=NO11G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MKGAILLALVAPTLAFVPVKPVVPMAKTQSRSRAQTIMQMDPSVMPGLAS
TPGQPTVESWLMDNADKKLSKAVMGIFSACKEIAYKIRTASCDKMACFNE
FGDEQLAIDILANNVLFQNLKDSGVVATASSEETPTEDPMGGEGFSVAFD
PLDGSSIIDTNFAVGTIFGVWPGSRLTGITGRQLAASGIAVYGPRTTITF
AIDGVDGAHEFLLVDDFTARHGQWIKTNTFTSIGEGKLFAPGNLRAIADN
PGYNAMHSYWLENKYQLRYTGGMVPDVNQIMVKGKGVFVNPESPSAKAKL
RLLYEVAPIGYMIEKAGGASSYGAGSVLDLNIYKTEDRTQVAYGSKDEVK
RFEDMVGIKYASSHPDIVSQNAAHA*
back to top

mRNA from alignment at chr11:623536..625820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01900.1 ID=NO11G01900.1|Name=NO11G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2285bp|location=Sequence derived from alignment at chr11:623536..625820+ (Nannochloropsis oceanica)
TCGCTGCAGGAGTTGTAGAGGGCCGATTACAAGGTCCTGCCTGGCTTGGT
GACAAGGTTGTGTATGTTTATGTGAGTGTACCAGTGGCCTGCTTTACATC
AGGGCGTGGGGGACGTGTTTGCCTTGTGCGTGGCGCGTTTGGACAGGGTC
GGCTTCAGTTTGCCCGTTGTTGCAGTCCACAACCCTCCCTTGCTTCACCT
CTGCAGCAGATCTTCGGCCACACGCATGCATGCCTTGCCCTTCATGTTTG
TGTCACGGGCATGCTTGTTAAATGGCGGCGCCGTGGATTTCGGGTTGCGA
GAGTGTCAGTGGTGGTGTTCGACTGTCCAATCACTCACTTTGGCTCGTGG
TTGTAGGTCTCTGAAAACACTCCAGATGCTGGGCTCTTGTCTTCGCCCAC
GTCGACGTTCCTCCCGATCTATTATCGCGACTCTTTTCTATCCACATTAG
CACATGGTACAAACCCTAAGTCGTGATTGCGCCGTCAGGGACAACACCAA
GAGACTTCGCCGTCATGCCTGCCTACCCTGCCCAATTTATGCTCAGCCCT
TTGGCCACAGGGACCGCTTACTTGGCTCCAACCAAACATCAACCCTCCCT
CCCCCCCTTCTCTCCCATCTCAAAATAACATAGACAGAGTTATAAATTTA
CCATGAAGGGTGCTATCCTCCTCGCCTTGGTCGCTCCGACCTTGGCTTTC
GTCCCCGTCAAGCCTGTTGTGCCCATGGCCAAGACCCAGTCCCGTAGCAG
GGCGCAGACCATCATGCAGATGGATCCCTCGGTCATGCCCGGCCTTGCCT
CCACCCCGGGTCAACCCACAGTTGAGAGCTGGTTGATGGACAACGCCGAC
AAGAAGCTTTGTAAGTACAGAGAGAGGAAAGGAAGGGGATCGATAAAGTG
GCACATTTTATCCTTAACCACCCCGACGCACCAACTCATCCCTACCATCT
TTATTTTCCTCCCCTCCTTACCCTCAAAACAGCCAAGGCCGTGATGGGCA
TCTTCTCCGCCTGCAAAGAGATCGCCTACAAGATCCGCACGGCGTCTTGT
GACAAAATGGCGTGCTTCAACGAGTTCGGTGACGAGCAGCTTGCCATTGA
CATCCTGGCCAACAACGTCCTCTTCCAAAACCTCAAGGACTCCGGGGTGG
TCGCCACGGCCTCCTCGGAGGAAACCCCTACGGAGGATCCGATGGGGGGT
GAGGGCTTCTCTGTGGCTTTTGATCCCCTCGATGGCTCTTCCATTATCGA
CACTAACTTTGCCGTGGGCACCATTTTCGGCGTGTGGCCCGGCTCCCGCC
TGACTGGTATCACTGGACGACAGCTCGCTGCATCCGGGATTGCTGTCTAT
GGACCCCGTACGACCATCACCTTTGCGATTGATGGCGTGGATGGTGCGCA
CGAGTTTTTGCTGGTGGATGACTTCACTGCCCGCCACGGGCAGTGGATCA
AGACCAACACATTTACCAGCATTGGGGAGGGCAAGCTTTTCGCCCCCGGG
AACTTGCGGGCCATTGCCGATAACCCCGGCTACAACGCCATGCACTCGTA
CTGGTTGGAGAACAAATACCAGCTTCGCTACACGGGCGGCATGGTGCCCG
ACGTGAACCAGATCATGGTCAAGGGCAAGGGCGTGTTCGTCAACCCCGAG
TCGCCCTCTGCCAAGGCCAAGCTCCGCTTGCTGTACGAGGTGGCACCCAT
TGGATACATGATTGAGAAGGCCGGCGGTGCATCTTCTTATGGCGCGGGTT
CGGTGCTGGACTTGAACATTTACAAGACGGAGGACCGCACCCAGGTGGCA
TACGGAAGCAAGGATGAGGTGAAGCGCTTTGAGGACATGGTGGGGATTAA
GTATGCCTCCTCCCACCCGGACATCGTTTCCCAGAATGCGGCGCACGCGT
AAATCACGTCGAAAGGATGGATGGATGCGAGAAGAATGAGAAGTGACGAT
GCAATCGGAGGAGGGGGGTTGGGGCTGGAGGGAGAGAGAGGGCAAGGTGG
GGATGGGCGGATGGGGCTCTCGTCACATGGCTCTCGGCATGCTGACGTGC
AGTAGGGGTCAAGGGAACGATGTGTGTTAGAGGTGCATGAGTGTATGTGA
GTATAATCCTCATGTTCCTCGCGTTGTTTCTCACTATATGTCATACTTGT
CGTTGTTTTTCCAGACCCTTTACTCTTGTTGGTTGGCGTTTTTCTAACTA
CTGCGGAAGAACCAAGATGGGCAAGAAACCAACCAAAAGAGAGCGAGCTT
ACTGAGATGCACAAACCTCAAAAGCTGCGTTTTGG
back to top

Coding sequence (CDS) from alignment at chr11:623536..625820+

>NO11G01900.1 ID=NO11G01900.1|Name=NO11G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at chr11:623536..625820+ (Nannochloropsis oceanica)
ATGAAGGGTGCTATCCTCCTCGCCTTGGTCGCTCCGACCTTGGCTTTCGT
CCCCGTCAAGCCTGTTGTGCCCATGGCCAAGACCCAGTCCCGTAGCAGGG
CGCAGACCATCATGCAGATGGATCCCTCGGTCATGCCCGGCCTTGCCTCC
ACCCCGGGTCAACCCACAGTTGAGAGCTGGTTGATGGACAACGCCGACAA
GAAGCTTTCCAAGGCCGTGATGGGCATCTTCTCCGCCTGCAAAGAGATCG
CCTACAAGATCCGCACGGCGTCTTGTGACAAAATGGCGTGCTTCAACGAG
TTCGGTGACGAGCAGCTTGCCATTGACATCCTGGCCAACAACGTCCTCTT
CCAAAACCTCAAGGACTCCGGGGTGGTCGCCACGGCCTCCTCGGAGGAAA
CCCCTACGGAGGATCCGATGGGGGGTGAGGGCTTCTCTGTGGCTTTTGAT
CCCCTCGATGGCTCTTCCATTATCGACACTAACTTTGCCGTGGGCACCAT
TTTCGGCGTGTGGCCCGGCTCCCGCCTGACTGGTATCACTGGACGACAGC
TCGCTGCATCCGGGATTGCTGTCTATGGACCCCGTACGACCATCACCTTT
GCGATTGATGGCGTGGATGGTGCGCACGAGTTTTTGCTGGTGGATGACTT
CACTGCCCGCCACGGGCAGTGGATCAAGACCAACACATTTACCAGCATTG
GGGAGGGCAAGCTTTTCGCCCCCGGGAACTTGCGGGCCATTGCCGATAAC
CCCGGCTACAACGCCATGCACTCGTACTGGTTGGAGAACAAATACCAGCT
TCGCTACACGGGCGGCATGGTGCCCGACGTGAACCAGATCATGGTCAAGG
GCAAGGGCGTGTTCGTCAACCCCGAGTCGCCCTCTGCCAAGGCCAAGCTC
CGCTTGCTGTACGAGGTGGCACCCATTGGATACATGATTGAGAAGGCCGG
CGGTGCATCTTCTTATGGCGCGGGTTCGGTGCTGGACTTGAACATTTACA
AGACGGAGGACCGCACCCAGGTGGCATACGGAAGCAAGGATGAGGTGAAG
CGCTTTGAGGACATGGTGGGGATTAAGTATGCCTCCTCCCACCCGGACAT
CGTTTCCCAGAATGCGGCGCACGCGTAA
back to top
Synonyms
Publications