NO11G01780.1, NO11G01780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01780.1
Unique NameNO11G01780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1554
Alignment locationchr11:583273..585000 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:583273..585000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01780.1 vs.
Match: EWM25056.1 (fructose- -bisphosphate [Nannochloropsis gaditana])

HSP 1 Score: 593.6 bits (1529), Expect = 6.000e-166
Identity = 330/476 (69.33%), Postives = 355/476 (74.58%), Query Frame = 0 
Query:   11 SATAPSPPVTAPAPVSISSHGLEAYHTHLVEAAKLATQLTQEQKDALETIANQMARPGRGLLAADESVPTLGKRLVAAGLVNDEETRRAYREVLFGHPEMGEYLSGAILFSETLGQKAIKDPEGRLFPALLQSKGVLPGVKVDTGLEPLGYSPRETHTTGMDDLMKRCQGFYAQGARFAKWRAVIRIDETAQLPTRACMQINSAELARYAAVCQACGLVPIVEPEILIEGSHTAETFARVTEAALSEVYYTMAQAKVFLEGYVREGRGIGMDRTEGRTPSYLS--YHRLPSPPILAINSTLLKPQMVMPGVDSTPEERPTPEEAARRTLEVLRRRVPPAVPGIMFLSGGQTEEQATQNLTLINQLAKRAPSSFRPSLTTCPWILSFSFGRSLQASVLAAWMGKEENYTAAVAIAGELAKANAQAQLGEYVGPHPSLLKDKSLHETNRGFYGQGVAGVAGAAASGEKEKTAEAPTEG 485
            S  +PS    APA    SSHGLEAYH HL+EAAKLA QLTQ QK+ALETIANQMARPGRGLLAADESVPTLGKRLVAAGLVNDEETRRAYREVLF HP++GEYLSGAILFSETLGQKA+KD EGRLFPALLQSKGVLPGVKVD GLEPL YS RETHT GM+DLM+RCQ FYAQGARFAKWRAVIRIDE A LPTRACMQINSAELARYAA CQACGLVPIVEP                 E  +   +     A+V                    T + LS  Y+ L    +  +  TLLKPQM+MPGVDS  E RP PEEAARRTLE LRRRVPPAVPG++FLSGGQTEEQATQNL LINQLAKR  S FRPS TTCPWILSFSFGRSLQASVLA W GK++NY  A+ +AG LAKANAQAQLGEY GPHPS+LK +SLHETNRG+     AG  G         TA  P  G
Sbjct:   26 STASPSSAPQAPA----SSHGLEAYHLHLMEAAKLAAQLTQHQKNALETIANQMARPGRGLLAADESVPTLGKRLVAAGLVNDEETRRAYREVLFSHPDLGEYLSGAILFSETLGQKAVKDAEGRLFPALLQSKGVLPGVKVDLGLEPLEYSARETHTKGMNDLMERCQEFYAQGARFAKWRAVIRIDEAANLPTRACMQINSAELARYAATCQACGLVPIVEP-----------------EILIEGAHSAETFARV--------------------TEAALSEVYYTLAQAKVF-LEGTLLKPQMIMPGVDSPSEGRPRPEEAARRTLEALRRRVPPAVPGVVFLSGGQTEEQATQNLNLINQLAKRPASPFRPSSTTCPWILSFSFGRSLQASVLATWDGKDKNYEKAMEVAGALAKANAQAQLGEYQGPHPSVLKGQSLHETNRGWGAN--AGEGGGKGESTAGATATVPPSG 457
The following BLAST results are available for this feature:
BLAST of NO11G01780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25056.16.000e-16669.33fructose- -bisphosphate [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01780NO11G01780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01780.1NO11G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01780.1.cds1NO11G01780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01780.1.cds2NO11G01780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01780.1 ID=NO11G01780.1|Name=NO11G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp
ATGTCCTCCTCCTCCGAGTCCGATTCCAATTCGGCCACAGCTCCCTCTCC
TCCTGTGACGGCTCCCGCTCCGGTATCCATCTCCTCGCATGGCCTTGAGG
CCTATCACACGCACCTCGTGGAGGCCGCCAAGCTGGCTACACAATTGACA
CAGGAGCAAAAGGACGCCCTCGAGACAATCGCGAATCAAATGGCCCGTCC
CGGGCGGGGTCTGCTGGCCGCCGACGAAAGCGTGCCCACTCTGGGCAAGC
GCCTAGTGGCCGCCGGGTTGGTCAATGATGAAGAGACGAGACGGGCTTAC
CGTGAGGTGTTGTTTGGTCACCCTGAAATGGGGGAGTACCTGAGTGGTGC
CATCCTCTTCTCCGAGACACTTGGACAGAAAGCAATCAAGGACCCAGAAG
GCCGTCTCTTTCCCGCATTGTTGCAAAGCAAGGGCGTCCTGCCCGGCGTT
AAGGTTGACACCGGCTTGGAACCCTTGGGGTACTCTCCGCGGGAGACGCA
TACCACAGGCATGGACGACCTGATGAAACGTTGCCAAGGGTTTTATGCGC
AAGGCGCGCGCTTTGCGAAATGGCGGGCTGTCATCCGAATCGATGAGACG
GCACAGTTGCCCACCCGCGCATGCATGCAGATCAACAGTGCAGAGCTCGC
GAGGTACGCGGCAGTGTGCCAGGCGTGTGGGCTTGTGCCCATTGTGGAGC
CGGAAATTTTGATTGAGGGAAGCCATACTGCGGAGACGTTTGCGAGGGTG
ACCGAGGCGGCGTTGAGCGAGGTTTATTACACCATGGCGCAAGCAAAGGT
GTTTTTGGAAGGGTATGTGAGGGAGGGGAGGGGGATAGGGATGGATAGGA
CGGAGGGGAGAACTCCCTCTTATCTTTCCTATCATCGCTTACCCTCCCCT
CCTATTCTTGCCATCAACAGCACGTTGCTCAAGCCCCAAATGGTCATGCC
AGGAGTCGATAGCACCCCAGAAGAGCGGCCTACCCCAGAAGAGGCAGCGC
GGCGAACGCTGGAAGTCCTGCGGAGACGCGTCCCACCTGCTGTCCCCGGC
ATTATGTTTTTGTCAGGGGGACAAACTGAAGAACAAGCCACGCAAAATCT
GACCCTAATCAACCAGCTCGCCAAGCGAGCTCCCTCCTCCTTCCGTCCCT
CCCTCACGACTTGTCCCTGGATCTTAAGCTTCTCCTTTGGTCGGTCGTTG
CAAGCCTCAGTGCTGGCTGCGTGGATGGGAAAGGAAGAAAACTACACCGC
AGCAGTGGCAATAGCAGGCGAGTTGGCAAAGGCAAATGCTCAAGCACAAC
TAGGGGAGTATGTCGGTCCACATCCTTCTCTGCTGAAAGACAAGAGCCTC
CATGAAACAAACAGGGGTTTCTACGGCCAGGGCGTCGCAGGAGTAGCTGG
GGCAGCAGCGTCAGGAGAGAAGGAGAAGACTGCTGAGGCTCCTACAGAGG
GGTTGGCCGAGAAGCCGGGCGAGGAAGAGGTAGGGAAGGCGGACATACAA
GCGGCAGTTTCTGCTGATGCGACAGAACGAGAAAGCAGCAGGAGCACGTT
GTAG
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protein sequence of NO11G01780.1

>NO11G01780.1-protein ID=NO11G01780.1-protein|Name=NO11G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MSSSSESDSNSATAPSPPVTAPAPVSISSHGLEAYHTHLVEAAKLATQLT
QEQKDALETIANQMARPGRGLLAADESVPTLGKRLVAAGLVNDEETRRAY
REVLFGHPEMGEYLSGAILFSETLGQKAIKDPEGRLFPALLQSKGVLPGV
KVDTGLEPLGYSPRETHTTGMDDLMKRCQGFYAQGARFAKWRAVIRIDET
AQLPTRACMQINSAELARYAAVCQACGLVPIVEPEILIEGSHTAETFARV
TEAALSEVYYTMAQAKVFLEGYVREGRGIGMDRTEGRTPSYLSYHRLPSP
PILAINSTLLKPQMVMPGVDSTPEERPTPEEAARRTLEVLRRRVPPAVPG
IMFLSGGQTEEQATQNLTLINQLAKRAPSSFRPSLTTCPWILSFSFGRSL
QASVLAAWMGKEENYTAAVAIAGELAKANAQAQLGEYVGPHPSLLKDKSL
HETNRGFYGQGVAGVAGAAASGEKEKTAEAPTEGLAEKPGEEEVGKADIQ
AAVSADATERESSRSTL*
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mRNA from alignment at chr11:583273..585000+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01780.1 ID=NO11G01780.1|Name=NO11G01780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp|location=Sequence derived from alignment at chr11:583273..585000+ (Nannochloropsis oceanica)
ATGTCCTCCTCCTCCGAGTCCGATTCCAATTCGGCCACAGCTCCCTCTCC
TCCTGTGACGGCTCCCGCTCCGGTATCCATCTCCTCGCATGGCCTTGAGG
CCTATCACACGCACCTCGTGGAGGCCGCCAAGCTGGCTACACAATTGACA
CAGGAGCAAAAGGACGCCCTCGAGACAATCGCGAATCAAATGGCCCGTCC
CGGGCGGGGTCTGCTGGCCGCCGACGAAAGCGTGCCCACTCTGGGCAAGC
GCCTAGTGGCCGCCGGGTTGGTCAATGATGAAGAGACGAGACGGGCTTAC
CGTGAGGTGTTGTTTGGTCACCCTGAAATGGGGGAGTACCTGAGTGGTGC
CATCCTCTTCTCCGAGACACTTGGACAGAAAGCAATCAAGGACCCAGAAG
GCCGTCTCTTTCCCGCATTGTTGCAAAGCAAGGGCGTCCTGCCCGGCGTT
AAGGTTGACACCGGCTTGGAACCCTTGGGGTACTCTCCGCGGGAGACGCA
TACCACAGGCATGGACGACCTGATGAAACGTTGCCAAGGGTTTTATGCGC
AAGGCGCGCGCTTTGCGAAATGGCGGGCTGTCATCCGAATCGATGAGACG
GCACAGTTGCCCACCCGCGCATGCATGCAGATCAACAGTGCAGAGCTCGC
GAGGTACGCGGCAGTGTGCCAGGCGTGTGGGCTTGTGCCCATTGTGGAGC
CGGAAATTTTGATTGAGGGAAGCCATACTGCGGAGACGTTTGCGAGGGTG
ACCGAGGCGGCGTTGAGCGAGGTTTATTACACCATGGCGCAAGCAAAGGT
GTTTTTGGAAGGGTATGTGAGGGAGGGGAGGGGGATAGGGATGGATAGGA
CGGAGGGGAGAACTCCCTCTTATCTTTCCTATCATCGCTTACCCTCCCCT
CCTATTCTTGCCATCAACAGCACGTTGCTCAAGCCCCAAATGGTCATGCC
AGGAGTCGATAGCACCCCAGAAGAGCGGCCTACCCCAGAAGAGGCAGCGC
GGCGAACGCTGGAAGTCCTGCGGAGACGCGTCCCACCTGCTGTCCCCGGC
ATTATGTTTTTGTCAGGTGCGTGGGTGTGCAGGCACCATCTGCTCCACTT
TGTTTTTGGAGCCTCTATCGCCTCTTTGCTCTCATATCGTGTCTTTTCCC
TGGCTTTCCCTGTCATTATAAATACTGCTTGATCAACGCTCACACTGCAC
TTTCTTGCTTCCTCTTCCGCCCAACTATTCTCTTCACCAGGGGGACAAAC
TGAAGAACAAGCCACGCAAAATCTGACCCTAATCAACCAGCTCGCCAAGC
GAGCTCCCTCCTCCTTCCGTCCCTCCCTCACGACTTGTCCCTGGATCTTA
AGCTTCTCCTTTGGTCGGTCGTTGCAAGCCTCAGTGCTGGCTGCGTGGAT
GGGAAAGGAAGAAAACTACACCGCAGCAGTGGCAATAGCAGGCGAGTTGG
CAAAGGCAAATGCTCAAGCACAACTAGGGGAGTATGTCGGTCCACATCCT
TCTCTGCTGAAAGACAAGAGCCTCCATGAAACAAACAGGGGTTTCTACGG
CCAGGGCGTCGCAGGAGTAGCTGGGGCAGCAGCGTCAGGAGAGAAGGAGA
AGACTGCTGAGGCTCCTACAGAGGGGTTGGCCGAGAAGCCGGGCGAGGAA
GAGGTAGGGAAGGCGGACATACAAGCGGCAGTTTCTGCTGATGCGACAGA
ACGAGAAAGCAGCAGGAGCACGTTGTAG
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Coding sequence (CDS) from alignment at chr11:583273..585000+

>NO11G01780.1 ID=NO11G01780.1|Name=NO11G01780.1|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at chr11:583273..585000+ (Nannochloropsis oceanica)
ATGTCCTCCTCCTCCGAGTCCGATTCCAATTCGGCCACAGCTCCCTCTCC
TCCTGTGACGGCTCCCGCTCCGGTATCCATCTCCTCGCATGGCCTTGAGG
CCTATCACACGCACCTCGTGGAGGCCGCCAAGCTGGCTACACAATTGACA
CAGGAGCAAAAGGACGCCCTCGAGACAATCGCGAATCAAATGGCCCGTCC
CGGGCGGGGTCTGCTGGCCGCCGACGAAAGCGTGCCCACTCTGGGCAAGC
GCCTAGTGGCCGCCGGGTTGGTCAATGATGAAGAGACGAGACGGGCTTAC
CGTGAGGTGTTGTTTGGTCACCCTGAAATGGGGGAGTACCTGAGTGGTGC
CATCCTCTTCTCCGAGACACTTGGACAGAAAGCAATCAAGGACCCAGAAG
GCCGTCTCTTTCCCGCATTGTTGCAAAGCAAGGGCGTCCTGCCCGGCGTT
AAGGTTGACACCGGCTTGGAACCCTTGGGGTACTCTCCGCGGGAGACGCA
TACCACAGGCATGGACGACCTGATGAAACGTTGCCAAGGGTTTTATGCGC
AAGGCGCGCGCTTTGCGAAATGGCGGGCTGTCATCCGAATCGATGAGACG
GCACAGTTGCCCACCCGCGCATGCATGCAGATCAACAGTGCAGAGCTCGC
GAGGTACGCGGCAGTGTGCCAGGCGTGTGGGCTTGTGCCCATTGTGGAGC
CGGAAATTTTGATTGAGGGAAGCCATACTGCGGAGACGTTTGCGAGGGTG
ACCGAGGCGGCGTTGAGCGAGGTTTATTACACCATGGCGCAAGCAAAGGT
GTTTTTGGAAGGGTATGTGAGGGAGGGGAGGGGGATAGGGATGGATAGGA
CGGAGGGGAGAACTCCCTCTTATCTTTCCTATCATCGCTTACCCTCCCCT
CCTATTCTTGCCATCAACAGCACGTTGCTCAAGCCCCAAATGGTCATGCC
AGGAGTCGATAGCACCCCAGAAGAGCGGCCTACCCCAGAAGAGGCAGCGC
GGCGAACGCTGGAAGTCCTGCGGAGACGCGTCCCACCTGCTGTCCCCGGC
ATTATGTTTTTGTCAGGGGGACAAACTGAAGAACAAGCCACGCAAAATCT
GACCCTAATCAACCAGCTCGCCAAGCGAGCTCCCTCCTCCTTCCGTCCCT
CCCTCACGACTTGTCCCTGGATCTTAAGCTTCTCCTTTGGTCGGTCGTTG
CAAGCCTCAGTGCTGGCTGCGTGGATGGGAAAGGAAGAAAACTACACCGC
AGCAGTGGCAATAGCAGGCGAGTTGGCAAAGGCAAATGCTCAAGCACAAC
TAGGGGAGTATGTCGGTCCACATCCTTCTCTGCTGAAAGACAAGAGCCTC
CATGAAACAAACAGGGGTTTCTACGGCCAGGGCGTCGCAGGAGTAGCTGG
GGCAGCAGCGTCAGGAGAGAAGGAGAAGACTGCTGAGGCTCCTACAGAGG
GGTTGGCCGAGAAGCCGGGCGAGGAAGAGGTAGGGAAGGCGGACATACAA
GCGGCAGTTTCTGCTGATGCGACAGAACGAGAAAGCAGCAGGAGCACGTT
GTAG
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Synonyms
Publications