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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr11 | genome | chr11:581319..584070 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01770.1 vs.
Match: EWM25035.1 (coiled-coil domain-containing protein 130 [Nannochloropsis gaditana]) HSP 1 Score: 461.5 bits (1186), Expect = 2.500e-126 Identity = 241/356 (67.70%), Postives = 283/356 (79.49%), Query Frame = 0
Query: 1 MSSLAAAQADGYYRPPDWDGKASLNKITGSKGHNQFTQKGVVRFELPYNSWCLKCESHIGKGVRFNATKVQAGNYFSTKIWEFRMKCATCKNLLIIRTDPKNCDYEFVEGIRRREQEYDAESIGLPVLSVEPSGAAGGVEGKGKAGVPISANAPHAGVSVDPLEVLERSKDHKRQMNAAAARLQELMDANNRLEADTSGVNRLMRTKFRQEKKVLQELEAESAAKGFRFRMLPASEEDGKEGPAVLLAGGSGGLTRARREGFRKGAKAKFTSIMSSSIFDGDGSSHKKRDTQSSSSSSALVVLGRRGSSSRSSSSRDLQSKAVVAADAKKALAVKRAKLGINPANFSVPSTGSSSS 357
MSSLAAAQADGYYRPPDWDGK+SL KITGSKGHNQ+TQ G++RFELPYNSWCLKC+ HIGKGVRFNA K+QAGNYFSTKIWEF MKCA+CKN L+IRTDPKNCDYEFVEGIRRREQEYD E+IGLPVLS EP+GA+ + G A P SANAP+ GVS DPL LER KD R+ NAAAARLQELM+A++RLEAD+SGVNRL+R KFR EKKVL++L+ ESA KG RFR+LP S ED + P LL GG+GGLTRARREGF K A+ K TSIMSSSIFD G+ + SSS SSALVV +RG ++ +SKAV+ A+ +K LAVKRA+LGI+ ++F ++S+
Sbjct: 1 MSSLAAAQADGYYRPPDWDGKSSLKKITGSKGHNQYTQSGIIRFELPYNSWCLKCDRHIGKGVRFNAKKIQAGNYFSTKIWEFHMKCASCKNRLVIRTDPKNCDYEFVEGIRRREQEYDPEAIGLPVLSAEPTGAS---DLAGAATTPSSANAPNGGVSADPLAALERGKDQIRRTNAAAARLQELMEASDRLEADSSGVNRLLRNKFRAEKKVLEDLDRESAEKGLRFRLLPPSAEDARMAPMALLEGGTGGLTRARREGFHKAARTKLTSIMSSSIFDDPGAGRR-----SSSGSSALVVGSKRGDPTK-------RSKAVLNAETQKDLAVKRARLGIDSSHFKASQAANAST 341
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01770.1 ID=NO11G01770.1|Name=NO11G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2453bp
CTTTGCTTGCGCCATGGTGTAATAAACCTCGCTCAACGCCGCCTCGGTCA
CCCTCGCAAACGTCTCCGCAGTATGGCTTCCCTCAATCAAAATTTCCGGC
TCCACAATGGGCACAAGCCCACACGCCTGGCACACTGCCGCGTACCTCGC
GAGCTCTGCACTGTTGATCTGCATGCATGCGCGGGTGGGCAACTGTGCCG
TCTCATCGATTCGGATGACAGCCCGCCATTTCGCAAAGCGCGCGCCTTGC
GCATAAAACCCTTGGCAACGTTTCATCAGGTCGTCCATGCCTGTGGTATG
CGTCTCCCGCGGAGAGTACCCCAAGGGTTCCAAGCCGGTGTCAACCTTAA
CGCCGGGCAGGACGCCCTTGCTTTGCAACAATGCGGGAAAGAGACGGCCT
TCTGGGTCCTTGATTGCTTTCTGTCCAAGTGTCTCGGAGAAGAGGATGGC
ACCACTCAGGTACTCCCCCATTTCAGGGTGACCAAACAACACCTCACGGT
AAGCCCGTCTCGTCTCTTCATCATTGACCAACCCGGCGGCCACTAGGCGC
TTGCCCAGAGTGGGCACGCTTTCGTCGGCGGCCAGCAGACCCCGCCCGGG
ACGGGCCATTTGATTCGCGATTGTCTCGAGGGCGTCCTTTTGCTCCTGTG
TCAATTGTGTAGCCAGCTTGGCGGCCTCCACGAGGTGCGTGTGATAGGCC
TCAAGGCCATGCGAGGAGATGGATACCGGAGCGGGAGCCGTCACAGGAGG
AGAGGGAGCTGTGGCCGAATTGGAATCGGACTCGGAGGAGGAGGACATGA
TGATACTGTGCGGGCTAGAGGAGGGTTGGGTTATGGAATTAGGGCGGCGA
TGGCAGCAATTCTGACAAACTTTGCGTACGGCTGACAATAATAAAGATCG
AGCAATGCGAGGTGATGGGGGCGTTAAAATGGCCGTGGTTATGGCAAGGT
GGTGGTGTGAGAGGAGACGTCAAAGCAACACAGGAGGAAGAGGAAGGCAT
GGCGGCGTTGCTAGACGCGCTGCCTATACTATGTTGGGTTTCATCACTCT
CTATTCACCACCACGCCGCACAACCATGCCACACAGGCACTGGTCGCAAG
ACCTGATACTTCGTCGATTGACCCCCTTCTCTGGACAATTTGGGCTGCCG
TATCTCTCACTCATCCTTTCTCTGTGCTGATCCCGACCCTGCAGTCGTCA
AGGCATGTCATCCTTAGCCGCGGCGCAAGCCGACGGGTATTACCGTCCCC
CAGACTGGGATGGCAAGGCTTCCTTGAACAAGATCACCGGCTCCAAAGGC
CACAACCAGTTCACACAAAAGGGTGTGGTCCGCTTCGAGCTTCCATACAA
CAGCTGGTGTTTGAAATGTGAATCCCACATCGGCAAGGGCGTGCGCTTCA
ATGCCACAAAAGTGCAGGCCGGCAACTACTTCTCCACGAAAATTTGGGAA
TTCCGCATGAAATGTGCCACGTGCAAGAATCTTCTCATCATCAGGACGGA
CCCGAAGAATTGCGATTACGAGTTTGTGGAGGGGATCCGGAGGCGCGAGC
AAGAATATGACGCAGAGTCTATTGGCTTGCCTGTGTTGTCGGTAGAGCCT
TCTGGAGCTGCCGGAGGTGTAGAAGGGAAAGGAAAAGCAGGTGTTCCTAT
ATCAGCCAATGCGCCTCATGCGGGTGTGTCGGTCGATCCGTTGGAGGTCT
TGGAGAGAAGTAAGGACCACAAGCGACAGATGAATGCAGCAGCAGCCCGA
TTGCAGGAATTGATGGACGCAAACAACAGGCTAGAGGCAGATACAAGTGG
AGTGAATCGGCTCATGCGGACGAAATTCCGCCAAGAGAAGAAAGTGTTGC
AGGAATTGGAGGCCGAGAGTGCGGCGAAGGGTTTTCGGTTTCGAATGTTG
CCTGCCAGTGAGGAGGATGGGAAGGAGGGGCCGGCTGTGTTGCTCGCGGG
AGGGTCGGGCGGACTGACCCGTGCTCGGCGAGAAGGGTTTAGGAAAGGGG
CCAAGGCAAAATTCACTAGTATTATGAGCTCATCGATTTTCGATGGGGAT
GGCAGTTCGCATAAGAAACGCGACACTCAGTCGTCGTCGTCATCGTCCGC
GTTGGTGGTATTGGGGCGGCGGGGGAGCAGCAGTAGGAGTAGCAGCAGTA
GAGACCTGCAGAGCAAGGCGGTGGTGGCTGCTGACGCGAAGAAAGCTTTA
GCTGTCAAGCGCGCCAAGTTGGGCATTAATCCGGCAAATTTTAGTGTGCC
CTCTACTGGTAGTTCGTCGTCTGTCTTGTCGACAGTGGTTGCGCGAAAGA
AAGGCTAAGATACACCTGGGGGCTGGAAACCTTGTACATTTTTGTAAGAA
CACATGTATTATTAAATGTATTAAAGCTCTAAAAAGTCAAAGAAACAAAG
GCACACGCATGTGTTATATATATATATCCTGGAAAATAACATACCATCAT
GGG back to topprotein sequence of NO11G01770.1 >NO11G01770.1-protein ID=NO11G01770.1-protein|Name=NO11G01770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MSSLAAAQADGYYRPPDWDGKASLNKITGSKGHNQFTQKGVVRFELPYNS
WCLKCESHIGKGVRFNATKVQAGNYFSTKIWEFRMKCATCKNLLIIRTDP
KNCDYEFVEGIRRREQEYDAESIGLPVLSVEPSGAAGGVEGKGKAGVPIS
ANAPHAGVSVDPLEVLERSKDHKRQMNAAAARLQELMDANNRLEADTSGV
NRLMRTKFRQEKKVLQELEAESAAKGFRFRMLPASEEDGKEGPAVLLAGG
SGGLTRARREGFRKGAKAKFTSIMSSSIFDGDGSSHKKRDTQSSSSSSAL
VVLGRRGSSSRSSSSRDLQSKAVVAADAKKALAVKRAKLGINPANFSVPS
TGSSSSVLSTVVARKKG* back to topmRNA from alignment at chr11:581319..584070- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01770.1 ID=NO11G01770.1|Name=NO11G01770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2752bp|location=Sequence derived from alignment at chr11:581319..584070- (Nannochloropsis oceanica)
CTTTGCTTGCGCCATGGTGTAATAAACCTCGCTCAACGCCGCCTCGGTCA
CCCTCGCAAACGTCTCCGCAGTATGGCTTCCCTCAATCAAAATTTCCGGC
TCCACAATGGGCACAAGCCCACACGCCTGGCACACTGCCGCGTACCTCGC
GAGCTCTGCACTGTTGATCTGCATGCATGCGCGGGTGGGCAACTGTGCCG
TCTCATCGATTCGGATGACAGCCCGCCATTTCGCAAAGCGCGCGCCTTGC
GCATAAAACCCTTGGCAACGTTTCATCAGGTCGTCCATGCCTGTGGTATG
CGTCTCCCGCGGAGAGTACCCCAAGGGTTCCAAGCCGGTGTCAACCTTAA
CGCCGGGCAGGACGCCCTTGCTTTGCAACAATGCGGGAAAGAGACGGCCT
TCTGGGTCCTTGATTGCTTTCTGTCCAAGTGTCTCGGAGAAGAGGATGGC
ACCACTCAGGTACTCCCCCATTTCAGGGTGACCAAACAACACCTCACGGT
AAGCCCGTCTCGTCTCTTCATCATTGACCAACCCGGCGGCCACTAGGCGC
TTGCCCAGAGTGGGCACGCTTTCGTCGGCGGCCAGCAGACCCCGCCCGGG
ACGGGCCATTTGATTCGCGATTGTCTCGAGGGCGTCCTTTTGCTCCTGTG
TCAATTGTGTAGCCAGCTTGGCGGCCTCCACGAGGTGCGTGTGATAGGCC
TCAAGGCCATGCGAGGAGATGGATACCGGAGCGGGAGCCGTCACAGGAGG
AGAGGGAGCTGTGGCCGAATTGGAATCGGACTCGGAGGAGGAGGACATGA
TGATACTGTGCGGGCTAGAGGAGGGTTGGGTTATGGAATTAGGGCGGCGA
TGGCAGCAATTCTGACAAACTTTGCGTACGGCTGACAATAATAAAGATCG
AGCAATGCGAGGTGATGGGGGCGTTAAAATGGCCGTGGTTATGGCAAGGT
GGTGGTGTGAGAGGAGACGTCAAAGCAACACAGGAGGAAGAGGAAGGCAT
GGCGGCGTTGCTAGACGCGCTGCCTATACTATGTTGGGTTTCATCACTCT
CTATTCACCACCACGCCGCACAACCATGCCACACAGGCACTGGTCGCAAG
ACCTGATACTTCGTCGATTGACCCCCTTCTCTGGACAATTTGGGCTGCCG
TATCTCTCACTCATCCTTTCTCTGTGCTGATCCCGACCCTGCAGTCGTCA
AGGCATGTCATCCTTAGCCGCGGCGCAAGCCGACGGGTATTACCGTCCCC
CAGACTGGGATGGCAAGGCTTCCTTGAACAAGATCACCGGCTCCAAAGGT
GTGTGGTACTATGTGTGATGTGGTGGTTCCAGGGTCTGAGTATCAGATTT
GTCCCTCGGGACTGACCCTATCCCTCCACCAATTTTAAATCCCCTCCTAC
AGGCCACAACCAGTTCACACAAAAGGGTGTGGTCCGCTTCGAGCTTCCAT
ACAACAGCTGGTGTTTGAAATGTGAATCCCACATCGGCAAGGGCGTGCGC
TTCAATGCCACAAAAGTGCAGGTGCGCTCGTGTGAAAGGTTGACAATGGT
TACTCCGCGTGTGAGTGTATGTGTGAGATGTTCCTTGTATATCTTCTATT
TCCCGCGCATCCCTTGCAATGCATATGTTGTGTCCCTCTGCCGCAATTTT
TAGGCCTCACGGGTGCTTTCCCTATTCTCCCTCCCTCGCCCCCCATCCCT
CCTCCCTCTCTTGAAGGCCGGCAACTACTTCTCCACGAAAATTTGGGAAT
TCCGCATGAAATGTGCCACGTGCAAGAATCTTCTCATCATCAGGACGGAC
CCGAAGAATTGCGATTACGAGTTTGTGGAGGGGATCCGGAGGCGCGAGCA
AGAATATGACGCAGAGTCTATTGGCTTGCCTGTGTTGTCGGTAGAGCCTT
CTGGAGCTGCCGGAGGTGTAGAAGGGAAAGGAAAAGCAGGTGTTCCTATA
TCAGCCAATGCGCCTCATGCGGGTGTGTCGGTCGATCCGTTGGAGGTCTT
GGAGAGAAGTAAGGACCACAAGCGACAGATGAATGCAGCAGCAGCCCGAT
TGCAGGAATTGATGGACGCAAACAACAGGCTAGAGGCAGATACAAGTGGA
GTGAATCGGCTCATGCGGACGAAATTCCGCCAAGAGAAGAAAGTGTTGCA
GGAATTGGAGGCCGAGAGTGCGGCGAAGGGTTTTCGGTTTCGAATGTTGC
CTGCCAGTGAGGAGGATGGGAAGGAGGGGCCGGCTGTGTTGCTCGCGGGA
GGGTCGGGCGGACTGACCCGTGCTCGGCGAGAAGGGTTTAGGAAAGGGGC
CAAGGCAAAATTCACTAGTATTATGAGCTCATCGATTTTCGATGGGGATG
GCAGTTCGCATAAGAAACGCGACACTCAGTCGTCGTCGTCATCGTCCGCG
TTGGTGGTATTGGGGCGGCGGGGGAGCAGCAGTAGGAGTAGCAGCAGTAG
AGACCTGCAGAGCAAGGCGGTGGTGGCTGCTGACGCGAAGAAAGCTTTAG
CTGTCAAGCGCGCCAAGTTGGGCATTAATCCGGCAAATTTTAGTGTGCCC
TCTACTGGTAGTTCGTCGTCTGTCTTGTCGACAGTGGTTGCGCGAAAGAA
AGGCTAAGATACACCTGGGGGCTGGAAACCTTGTACATTTTTGTAAGAAC
ACATGTATTATTAAATGTATTAAAGCTCTAAAAAGTCAAAGAAACAAAGG
CACACGCATGTGTTATATATATATATCCTGGAAAATAACATACCATCATG
GG back to topCoding sequence (CDS) from alignment at chr11:581319..584070- >NO11G01770.1 ID=NO11G01770.1|Name=NO11G01770.1|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at chr11:581319..584070- (Nannochloropsis oceanica)
ATGTCATCCTTAGCCGCGGCGCAAGCCGACGGGTATTACCGTCCCCCAGA
CTGGGATGGCAAGGCTTCCTTGAACAAGATCACCGGCTCCAAAGGCCACA
ACCAGTTCACACAAAAGGGTGTGGTCCGCTTCGAGCTTCCATACAACAGC
TGGTGTTTGAAATGTGAATCCCACATCGGCAAGGGCGTGCGCTTCAATGC
CACAAAAGTGCAGGCCGGCAACTACTTCTCCACGAAAATTTGGGAATTCC
GCATGAAATGTGCCACGTGCAAGAATCTTCTCATCATCAGGACGGACCCG
AAGAATTGCGATTACGAGTTTGTGGAGGGGATCCGGAGGCGCGAGCAAGA
ATATGACGCAGAGTCTATTGGCTTGCCTGTGTTGTCGGTAGAGCCTTCTG
GAGCTGCCGGAGGTGTAGAAGGGAAAGGAAAAGCAGGTGTTCCTATATCA
GCCAATGCGCCTCATGCGGGTGTGTCGGTCGATCCGTTGGAGGTCTTGGA
GAGAAGTAAGGACCACAAGCGACAGATGAATGCAGCAGCAGCCCGATTGC
AGGAATTGATGGACGCAAACAACAGGCTAGAGGCAGATACAAGTGGAGTG
AATCGGCTCATGCGGACGAAATTCCGCCAAGAGAAGAAAGTGTTGCAGGA
ATTGGAGGCCGAGAGTGCGGCGAAGGGTTTTCGGTTTCGAATGTTGCCTG
CCAGTGAGGAGGATGGGAAGGAGGGGCCGGCTGTGTTGCTCGCGGGAGGG
TCGGGCGGACTGACCCGTGCTCGGCGAGAAGGGTTTAGGAAAGGGGCCAA
GGCAAAATTCACTAGTATTATGAGCTCATCGATTTTCGATGGGGATGGCA
GTTCGCATAAGAAACGCGACACTCAGTCGTCGTCGTCATCGTCCGCGTTG
GTGGTATTGGGGCGGCGGGGGAGCAGCAGTAGGAGTAGCAGCAGTAGAGA
CCTGCAGAGCAAGGCGGTGGTGGCTGCTGACGCGAAGAAAGCTTTAGCTG
TCAAGCGCGCCAAGTTGGGCATTAATCCGGCAAATTTTAGTGTGCCCTCT
ACTGGTAGTTCGTCGTCTGTCTTGTCGACAGTGGTTGCGCGAAAGAAAGG
CTAA back to top
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