NO11G01700.1, NO11G01700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01700.1
Unique NameNO11G01700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2169
Alignment locationchr11:555807..558108 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:555807..558108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01700.1 vs.
Match: EWM25045.1 (Cellulose synthase [Nannochloropsis gaditana])

HSP 1 Score: 1109.4 bits (2868), Expect = 0.000e+0
Identity = 550/672 (81.85%), Postives = 599/672 (89.14%), Query Frame = 0 
Query:   56 SSSFRSSGMRADPPAAGAPAGAIFPPAGSNAVPAGYSVAE----------------PIASSV-ATKAAGMPPRPAGAMIVEMGSMEDHHHSETSSATGSISQPDLDVNFNAAIYSTLKQKIHDRSFVVAAQLAQLCYLTWRWYYFLITPSTLYVSLPFIIAETMIVLGGSFITYFLVWNQCKRPKLRLVDLKLERRELPTVDVMIPCYNEPVEIVRQTTLAALAMDYPKEKLAVIVCDDGNSSAMRALIAQLRADMGGSKATLRYIARKKIPGVPHHAKAGNINNALMNEGTSGDFIVIFDCDMICRPEYLQCVLPHFYKLEADALVVDERIAMVQTPQAFVNVPEDDPLGQQYRYFYGPVLHGWDAVDSTPCCGTNVTFSRKALLSVGGFTYGSITEDFLTSMTLHSHGFKTKYIHEYLAKGLSPESVHDFMKQRFRWAAGGLEIFVRNNALFKRGLSPTQKFLYFWAGFNTCLSIPMVYLIYCPIIYLLGQSRVQIATFDTIEYFVFFLPYMFLQLCCMRISYRDVPSIYLRRSLQESVFMLFCYARAVITVVVGFKLGFKVTSKDAEASEFRKSFNWCIPYVIYYFLGSMSLGFGVLNMYRAFQAPDHSPKSMAAVAVSLFWIVFIMWQMWPPIGYLLRCLDPSPQVEKASPTLGSSSGAFSTPAPAGA 711
            S+S+ S+  R+D  AAG PAGAI  PAG  + PAG +++                 P++S+  A+K   +PP PA  M VEMG +EDH+HS+TSSATGSISQP+LDVNFNAA+Y TLKQKI +R+FVVAAQLAQL YLTWRWYYF++TPSTLYVSLPFI+AETMIVLGGSFITYFLVWNQCKRPKLRLVDLK+ER+ELPTVDVMIPCYNEPVEIVR+TTLAALAMDYPKEKL+++VCDDGNS+AMRALIAQLRADMGGSKATLRYIARKKIPGVPHHAKAGNINNALMNEGTSGDFIVIFDCDMICRPE+LQCVLPHFYKLE DALV+DE +AMVQTPQ+FVNVPEDDPLGQQYRYFYGPVLHGWD+V +TPCCGTNVTFSRKAL+SVGGFTYGSITEDFLTSMTLHSHGF+TKYIHEYLAKGLSPESVHDFMKQRFRWAAGGLEIFVRNNALFKRGL P QKFLYFWAGFNTCL+IPM+YLIY PIIYLLGQS VQIATFDT++YF+FFLPYMFLQ+CCM ISYRDVP IYLRRSLQESVFMLFCYARAVITVVVGFKLGFKVTSKDAEASEFRKSFNWCIPY+IYYFLGSMS+GFGVLNMYRA+QAPDH P SM A+ VSLFWI FIMWQMWPPIGYLLRCLDP P VEK      + S   S   P  A
Sbjct:    7 SNSYSSTTSRSDVAAAGTPAGAIPFPAGGFSAPAGSAISSGATSPDASVSPMTSTSPVSSTTSASKRLIIPPSPA--MAVEMGVLEDHNHSDTSSATGSISQPELDVNFNAAVYHTLKQKIFERTFVVAAQLAQLAYLTWRWYYFIVTPSTLYVSLPFIVAETMIVLGGSFITYFLVWNQCKRPKLRLVDLKVERQELPTVDVMIPCYNEPVEIVRETTLAALAMDYPKEKLSIVVCDDGNSAAMRALIAQLRADMGGSKATLRYIARKKIPGVPHHAKAGNINNALMNEGTSGDFIVIFDCDMICRPEFLQCVLPHFYKLEEDALVIDEEVAMVQTPQSFVNVPEDDPLGQQYRYFYGPVLHGWDSVGTTPCCGTNVTFSRKALMSVGGFTYGSITEDFLTSMTLHSHGFRTKYIHEYLAKGLSPESVHDFMKQRFRWAAGGLEIFVRNNALFKRGLRPVQKFLYFWAGFNTCLAIPMIYLIYRPIIYLLGQSSVQIATFDTVQYFIFFLPYMFLQVCCMNISYRDVPKIYLRRSLQESVFMLFCYARAVITVVVGFKLGFKVTSKDAEASEFRKSFNWCIPYLIYYFLGSMSVGFGVLNMYRAYQAPDHDPMSMMALCVSLFWICFIMWQMWPPIGYLLRCLDPQPAVEKVVADDAAPSSRQSAIVPVMA 676
The following BLAST results are available for this feature:
BLAST of NO11G01700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25045.10.000e+081.85Cellulose synthase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01700NO11G01700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01700.1NO11G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01700.1.cds1NO11G01700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01700.1.cds2NO11G01700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01700.1 ID=NO11G01700.1|Name=NO11G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2169bp
ATGGTCTGCGCCAGCCGGGGAAGCCAACTGCTTCATTTTGTGAATGAGCG
CCGTGGCAGCAACAGCGGCATCAGCAGCAGCAGCAGCAGTAGCAGCAGCA
GCAGCCGTCGCTTGGACACACGAACAGCCGCCCTCTCCACTCCTATCTCA
AAGATGCACACCAGCAGCAGCAGCTTCCGTAGCAGCGGCATGAGGGCCGA
CCCGCCCGCGGCGGGCGCCCCCGCGGGAGCCATCTTCCCTCCGGCCGGGA
GCAATGCCGTTCCCGCAGGATACTCCGTCGCTGAGCCCATCGCCTCCTCA
GTCGCAACCAAGGCTGCAGGTATGCCTCCCCGACCGGCCGGCGCCATGAT
CGTGGAGATGGGGTCCATGGAAGACCACCACCACAGCGAGACCTCGTCCG
CCACCGGCTCCATCTCCCAGCCCGACCTGGACGTGAATTTCAACGCTGCC
ATTTACTCCACCCTCAAGCAGAAAATCCACGACCGGTCCTTCGTTGTGGC
TGCGCAGCTGGCACAACTTTGCTACTTGACCTGGCGTTGGTACTACTTTC
TAATTACCCCCTCTACGCTCTACGTATCCTTGCCCTTTATTATTGCCGAG
ACGATGATCGTGCTTGGCGGTTCTTTCATCACCTACTTCTTGGTGTGGAA
CCAATGCAAGCGGCCCAAACTCCGCCTCGTGGACCTGAAATTGGAACGGC
GCGAGCTGCCCACCGTGGATGTGATGATTCCTTGCTATAATGAGCCGGTG
GAGATTGTGCGGCAGACGACGCTAGCAGCCTTGGCTATGGACTACCCCAA
GGAGAAGCTTGCAGTCATTGTCTGCGATGATGGGAATTCATCGGCCATGC
GCGCGTTGATTGCACAGTTGCGGGCAGATATGGGAGGGAGTAAGGCGACG
TTGCGGTACATCGCCCGGAAGAAGATTCCCGGTGTCCCTCACCACGCCAA
GGCTGGGAATATCAACAATGCCTTGATGAACGAGGGCACGAGCGGGGATT
TCATTGTGATTTTCGACTGTGACATGATTTGTCGCCCCGAGTATTTGCAG
TGTGTTTTGCCGCATTTTTACAAGCTGGAGGCAGATGCCCTGGTGGTGGA
TGAGCGCATCGCCATGGTCCAGACACCGCAGGCCTTCGTGAATGTCCCTG
AGGACGACCCTCTTGGTCAGCAGTACCGATATTTCTACGGTCCCGTCCTG
CATGGGTGGGACGCGGTGGATTCGACGCCATGCTGTGGCACCAATGTGAC
CTTCTCCCGCAAGGCCTTGTTGTCTGTGGGGGGATTTACTTACGGAAGCA
TTACGGAGGATTTCCTGACGTCGATGACGCTGCACTCGCACGGTTTCAAG
ACAAAGTACATCCACGAATATTTGGCCAAGGGTCTCTCACCTGAAAGTGT
GCATGACTTTATGAAACAGCGCTTTCGATGGGCGGCGGGTGGATTGGAGA
TTTTTGTGCGGAACAACGCCTTGTTCAAGCGGGGCCTGTCGCCGACGCAG
AAGTTTTTGTACTTTTGGGCTGGATTCAACACGTGCTTGTCGATCCCGAT
GGTGTACCTGATCTATTGCCCCATCATTTACCTGCTCGGCCAGTCAAGAG
TGCAGATTGCGACATTTGACACGATTGAGTATTTTGTGTTCTTCCTGCCG
TACATGTTTTTGCAACTGTGCTGCATGCGCATTTCGTACCGCGACGTGCC
GTCGATTTATTTGCGTCGGTCGTTGCAAGAGTCCGTGTTTATGCTGTTCT
GCTATGCGCGCGCTGTGATCACGGTGGTGGTAGGGTTTAAGTTGGGGTTC
AAGGTGACGAGCAAGGACGCCGAGGCGAGCGAATTCCGGAAAAGCTTCAA
CTGGTGCATTCCCTACGTCATCTACTACTTCCTCGGCTCCATGTCCTTGG
GCTTCGGGGTTTTGAACATGTACCGCGCCTTCCAAGCCCCAGACCACTCC
CCCAAATCGATGGCCGCCGTGGCCGTCTCCCTGTTTTGGATTGTTTTCAT
CATGTGGCAGATGTGGCCCCCCATCGGCTACCTCCTTCGTTGTCTCGACC
CCAGTCCTCAAGTAGAAAAGGCTTCTCCAACACTCGGGTCTTCTTCAGGG
GCTTTCTCCACTCCTGCTCCCGCGGGTGCCGTTGGTGTTCTCCCGGCAGC
GGCGCATGTGTCAGTCTAA
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protein sequence of NO11G01700.1

>NO11G01700.1-protein ID=NO11G01700.1-protein|Name=NO11G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=723bp
MVCASRGSQLLHFVNERRGSNSGISSSSSSSSSSSRRLDTRTAALSTPIS
KMHTSSSSFRSSGMRADPPAAGAPAGAIFPPAGSNAVPAGYSVAEPIASS
VATKAAGMPPRPAGAMIVEMGSMEDHHHSETSSATGSISQPDLDVNFNAA
IYSTLKQKIHDRSFVVAAQLAQLCYLTWRWYYFLITPSTLYVSLPFIIAE
TMIVLGGSFITYFLVWNQCKRPKLRLVDLKLERRELPTVDVMIPCYNEPV
EIVRQTTLAALAMDYPKEKLAVIVCDDGNSSAMRALIAQLRADMGGSKAT
LRYIARKKIPGVPHHAKAGNINNALMNEGTSGDFIVIFDCDMICRPEYLQ
CVLPHFYKLEADALVVDERIAMVQTPQAFVNVPEDDPLGQQYRYFYGPVL
HGWDAVDSTPCCGTNVTFSRKALLSVGGFTYGSITEDFLTSMTLHSHGFK
TKYIHEYLAKGLSPESVHDFMKQRFRWAAGGLEIFVRNNALFKRGLSPTQ
KFLYFWAGFNTCLSIPMVYLIYCPIIYLLGQSRVQIATFDTIEYFVFFLP
YMFLQLCCMRISYRDVPSIYLRRSLQESVFMLFCYARAVITVVVGFKLGF
KVTSKDAEASEFRKSFNWCIPYVIYYFLGSMSLGFGVLNMYRAFQAPDHS
PKSMAAVAVSLFWIVFIMWQMWPPIGYLLRCLDPSPQVEKASPTLGSSSG
AFSTPAPAGAVGVLPAAAHVSV*
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mRNA from alignment at chr11:555807..558108+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01700.1 ID=NO11G01700.1|Name=NO11G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2302bp|location=Sequence derived from alignment at chr11:555807..558108+ (Nannochloropsis oceanica)
ATGGTCTGCGCCAGCCGGGGAAGCCAACTGCTTCATTTTGTGAATGAGCG
CCGGTTCGATACTACACCATGATTTTTGCAAGCACTCACATACCGTGCTC
ATACACACATCATATACATGCACACAGGCCCTTCCGAGGTGTTCTGTCCT
TCTCCCCGCCTTCGCTCCCTGTCGCCCATATAACAGTGGCAGCAACAGCG
GCATCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCCGTCGCTTGGAC
ACACGAACAGCCGCCCTCTCCACTCCTATCTCAAAGATGCACACCAGCAG
CAGCAGCTTCCGTAGCAGCGGCATGAGGGCCGACCCGCCCGCGGCGGGCG
CCCCCGCGGGAGCCATCTTCCCTCCGGCCGGGAGCAATGCCGTTCCCGCA
GGATACTCCGTCGCTGAGCCCATCGCCTCCTCAGTCGCAACCAAGGCTGC
AGGTATGCCTCCCCGACCGGCCGGCGCCATGATCGTGGAGATGGGGTCCA
TGGAAGACCACCACCACAGCGAGACCTCGTCCGCCACCGGCTCCATCTCC
CAGCCCGACCTGGACGTGAATTTCAACGCTGCCATTTACTCCACCCTCAA
GCAGAAAATCCACGACCGGTCCTTCGTTGTGGCTGCGCAGCTGGCACAAC
TTTGCTACTTGACCTGGCGTTGGTACTACTTTCTAATTACCCCCTCTACG
CTCTACGTATCCTTGCCCTTTATTATTGCCGAGACGATGATCGTGCTTGG
CGGTTCTTTCATCACCTACTTCTTGGTGTGGAACCAATGCAAGCGGCCCA
AACTCCGCCTCGTGGACCTGAAATTGGAACGGCGCGAGCTGCCCACCGTG
GATGTGATGATTCCTTGCTATAATGAGCCGGTGGAGATTGTGCGGCAGAC
GACGCTAGCAGCCTTGGCTATGGACTACCCCAAGGAGAAGCTTGCAGTCA
TTGTCTGCGATGATGGGAATTCATCGGCCATGCGCGCGTTGATTGCACAG
TTGCGGGCAGATATGGGAGGGAGTAAGGCGACGTTGCGGTACATCGCCCG
GAAGAAGATTCCCGGTGTCCCTCACCACGCCAAGGCTGGGAATATCAACA
ATGCCTTGATGAACGAGGGCACGAGCGGGGATTTCATTGTGATTTTCGAC
TGTGACATGATTTGTCGCCCCGAGTATTTGCAGTGTGTTTTGCCGCATTT
TTACAAGCTGGAGGCAGATGCCCTGGTGGTGGATGAGCGCATCGCCATGG
TCCAGACACCGCAGGCCTTCGTGAATGTCCCTGAGGACGACCCTCTTGGT
CAGCAGTACCGATATTTCTACGGTCCCGTCCTGCATGGGTGGGACGCGGT
GGATTCGACGCCATGCTGTGGCACCAATGTGACCTTCTCCCGCAAGGCCT
TGTTGTCTGTGGGGGGATTTACTTACGGAAGCATTACGGAGGATTTCCTG
ACGTCGATGACGCTGCACTCGCACGGTTTCAAGACAAAGTACATCCACGA
ATATTTGGCCAAGGGTCTCTCACCTGAAAGTGTGCATGACTTTATGAAAC
AGCGCTTTCGATGGGCGGCGGGTGGATTGGAGATTTTTGTGCGGAACAAC
GCCTTGTTCAAGCGGGGCCTGTCGCCGACGCAGAAGTTTTTGTACTTTTG
GGCTGGATTCAACACGTGCTTGTCGATCCCGATGGTGTACCTGATCTATT
GCCCCATCATTTACCTGCTCGGCCAGTCAAGAGTGCAGATTGCGACATTT
GACACGATTGAGTATTTTGTGTTCTTCCTGCCGTACATGTTTTTGCAACT
GTGCTGCATGCGCATTTCGTACCGCGACGTGCCGTCGATTTATTTGCGTC
GGTCGTTGCAAGAGTCCGTGTTTATGCTGTTCTGCTATGCGCGCGCTGTG
ATCACGGTGGTGGTAGGGTTTAAGTTGGGGTTCAAGGTGACGAGCAAGGA
CGCCGAGGCGAGCGAATTCCGGAAAAGCTTCAACTGGTGCATTCCCTACG
TCATCTACTACTTCCTCGGCTCCATGTCCTTGGGCTTCGGGGTTTTGAAC
ATGTACCGCGCCTTCCAAGCCCCAGACCACTCCCCCAAATCGATGGCCGC
CGTGGCCGTCTCCCTGTTTTGGATTGTTTTCATCATGTGGCAGATGTGGC
CCCCCATCGGCTACCTCCTTCGTTGTCTCGACCCCAGTCCTCAAGTAGAA
AAGGCTTCTCCAACACTCGGGTCTTCTTCAGGGGCTTTCTCCACTCCTGC
TCCCGCGGGTGCCGTTGGTGTTCTCCCGGCAGCGGCGCATGTGTCAGTCT
AA
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Coding sequence (CDS) from alignment at chr11:555807..558108+

>NO11G01700.1 ID=NO11G01700.1|Name=NO11G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=2169bp|location=Sequence derived from alignment at chr11:555807..558108+ (Nannochloropsis oceanica)
ATGGTCTGCGCCAGCCGGGGAAGCCAACTGCTTCATTTTGTGAATGAGCG
CCGTGGCAGCAACAGCGGCATCAGCAGCAGCAGCAGCAGTAGCAGCAGCA
GCAGCCGTCGCTTGGACACACGAACAGCCGCCCTCTCCACTCCTATCTCA
AAGATGCACACCAGCAGCAGCAGCTTCCGTAGCAGCGGCATGAGGGCCGA
CCCGCCCGCGGCGGGCGCCCCCGCGGGAGCCATCTTCCCTCCGGCCGGGA
GCAATGCCGTTCCCGCAGGATACTCCGTCGCTGAGCCCATCGCCTCCTCA
GTCGCAACCAAGGCTGCAGGTATGCCTCCCCGACCGGCCGGCGCCATGAT
CGTGGAGATGGGGTCCATGGAAGACCACCACCACAGCGAGACCTCGTCCG
CCACCGGCTCCATCTCCCAGCCCGACCTGGACGTGAATTTCAACGCTGCC
ATTTACTCCACCCTCAAGCAGAAAATCCACGACCGGTCCTTCGTTGTGGC
TGCGCAGCTGGCACAACTTTGCTACTTGACCTGGCGTTGGTACTACTTTC
TAATTACCCCCTCTACGCTCTACGTATCCTTGCCCTTTATTATTGCCGAG
ACGATGATCGTGCTTGGCGGTTCTTTCATCACCTACTTCTTGGTGTGGAA
CCAATGCAAGCGGCCCAAACTCCGCCTCGTGGACCTGAAATTGGAACGGC
GCGAGCTGCCCACCGTGGATGTGATGATTCCTTGCTATAATGAGCCGGTG
GAGATTGTGCGGCAGACGACGCTAGCAGCCTTGGCTATGGACTACCCCAA
GGAGAAGCTTGCAGTCATTGTCTGCGATGATGGGAATTCATCGGCCATGC
GCGCGTTGATTGCACAGTTGCGGGCAGATATGGGAGGGAGTAAGGCGACG
TTGCGGTACATCGCCCGGAAGAAGATTCCCGGTGTCCCTCACCACGCCAA
GGCTGGGAATATCAACAATGCCTTGATGAACGAGGGCACGAGCGGGGATT
TCATTGTGATTTTCGACTGTGACATGATTTGTCGCCCCGAGTATTTGCAG
TGTGTTTTGCCGCATTTTTACAAGCTGGAGGCAGATGCCCTGGTGGTGGA
TGAGCGCATCGCCATGGTCCAGACACCGCAGGCCTTCGTGAATGTCCCTG
AGGACGACCCTCTTGGTCAGCAGTACCGATATTTCTACGGTCCCGTCCTG
CATGGGTGGGACGCGGTGGATTCGACGCCATGCTGTGGCACCAATGTGAC
CTTCTCCCGCAAGGCCTTGTTGTCTGTGGGGGGATTTACTTACGGAAGCA
TTACGGAGGATTTCCTGACGTCGATGACGCTGCACTCGCACGGTTTCAAG
ACAAAGTACATCCACGAATATTTGGCCAAGGGTCTCTCACCTGAAAGTGT
GCATGACTTTATGAAACAGCGCTTTCGATGGGCGGCGGGTGGATTGGAGA
TTTTTGTGCGGAACAACGCCTTGTTCAAGCGGGGCCTGTCGCCGACGCAG
AAGTTTTTGTACTTTTGGGCTGGATTCAACACGTGCTTGTCGATCCCGAT
GGTGTACCTGATCTATTGCCCCATCATTTACCTGCTCGGCCAGTCAAGAG
TGCAGATTGCGACATTTGACACGATTGAGTATTTTGTGTTCTTCCTGCCG
TACATGTTTTTGCAACTGTGCTGCATGCGCATTTCGTACCGCGACGTGCC
GTCGATTTATTTGCGTCGGTCGTTGCAAGAGTCCGTGTTTATGCTGTTCT
GCTATGCGCGCGCTGTGATCACGGTGGTGGTAGGGTTTAAGTTGGGGTTC
AAGGTGACGAGCAAGGACGCCGAGGCGAGCGAATTCCGGAAAAGCTTCAA
CTGGTGCATTCCCTACGTCATCTACTACTTCCTCGGCTCCATGTCCTTGG
GCTTCGGGGTTTTGAACATGTACCGCGCCTTCCAAGCCCCAGACCACTCC
CCCAAATCGATGGCCGCCGTGGCCGTCTCCCTGTTTTGGATTGTTTTCAT
CATGTGGCAGATGTGGCCCCCCATCGGCTACCTCCTTCGTTGTCTCGACC
CCAGTCCTCAAGTAGAAAAGGCTTCTCCAACACTCGGGTCTTCTTCAGGG
GCTTTCTCCACTCCTGCTCCCGCGGGTGCCGTTGGTGTTCTCCCGGCAGC
GGCGCATGTGTCAGTCTAA
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Synonyms
Publications