NO11G01680.1, NO11G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01680.1
Unique NameNO11G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1216
Alignment locationchr11:553386..554731 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:553386..554731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01680.1 vs.
Match: EWM25034.1 (pyridoxamine 5 -phosphate oxidase [Nannochloropsis gaditana])

HSP 1 Score: 349.0 bits (894), Expect = 1.500e-92
Identity = 198/319 (62.07%), Postives = 227/319 (71.16%), Query Frame = 0 
Query:    6 LYIFLTHTAA--VVFACCMLSLPARGSARCTATAAAFLGASSSSLALPHFRQDHGQDSRRFLSSSTPMQAVADLRKEYSASGLEEHEVPSEPMTLFRRWLDEAVAAKVVEPNAMCLSTVSADGKPSGRYVLLKGLDDRGFVWYTNYQSRKGQELAAAAFHVDGVDAPAAGPP----------ACLTFWWGDLERSVRIEGTVERVAEAESQAYFNSRPRGSRIGAWASNQSRPIGSRAALEAQYEDVCARFGGEKEEDNEGQVQPVPKPEHWGGFRLVPERVEFWKGRQSRLHDRLAYALLQEEGKAGGRKWALERLQP 313
            ++ F  + AA  ++  CCML    R +   T  A AFL   + S    HF       SR F S S  M +VADLRKEYSASGL E  +PSEP+++FR+WLDEAVAA+V+EPNAMCLSTVS+DGKPSGR+VLLKGLDDRGF W+TNYQSRKG +LA A      V + AA PP          A LTFWWGDLERSVR+EG VER++E  SQAYF+SRPRGSRIGAWAS QSRPIGSR+ LE+QY  V ARFGGE+  D+     P+PKP  WGGFRLVPERVEFWKGRQSRLHDRL Y L  EE KA GR W L RLQP
Sbjct:   32 VFFFKVNAAATLLIIVCCML----RPTHSYTRRALAFLALPNRS----HFCT--ASLSRSFTSRS--MSSVADLRKEYSASGLVEENMPSEPLSVFRQWLDEAVAAQVLEPNAMCLSTVSSDGKPSGRFVLLKGLDDRGFTWFTNYQSRKGHDLAGAPV-APAVTSSAAIPPSSSGSSAPPFAALTFWWGDLERSVRVEGWVERLSEEASQAYFDSRPRGSRIGAWASEQSRPIGSRSDLESQYASVSARFGGEEGNDS---AHPIPKPAQWGGFRLVPERVEFWKGRQSRLHDRLMYTL--EEDKA-GRIWKLTRLQP 331
The following BLAST results are available for this feature:
BLAST of NO11G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25034.11.500e-9262.07pyridoxamine 5 -phosphate oxidase [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01680NO11G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01680.1NO11G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01680.1.cds1NO11G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01680.1.cds2NO11G01680.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01680.1 ID=NO11G01680.1|Name=NO11G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1216bp
AGGGCACGTGTCCTTCCATACATGCCTGGCCGTCTTCTCTACATCTTTCT
AACTCACACCGCTGCTGTCGTCTTCGCTTGCTGCATGCTATCTTTGCCTG
CTCGTGGAAGCGCCCGCTGCACGGCCACTGCTGCTGCCTTCCTTGGCGCA
TCGTCCTCCTCCCTCGCGCTCCCTCATTTCCGCCAAGATCACGGCCAGGA
CTCCCGTCGGTTCCTCTCATCCAGCACACCCATGCAGGCCGTCGCGGACC
TTCGGAAAGAATATTCGGCTTCGGGCCTGGAGGAGCATGAAGTGCCCTCC
GAACCTATGACCCTCTTTCGACGTTGGCTCGACGAGGCCGTCGCCGCGAA
AGTCGTCGAACCCAACGCCATGTGTTTGTCCACAGTCAGCGCGGATGGGA
AACCGTCGGGCCGGTATGTGTTGCTCAAGGGACTGGATGACCGAGGCTTT
GTCTGGTACACCAACTACCAATCGCGCAAAGGACAAGAGCTGGCAGCGGC
AGCTTTTCATGTGGACGGCGTCGATGCGCCAGCAGCAGGGCCACCAGCTT
GCTTGACTTTTTGGTGGGGAGATTTAGAACGATCCGTGAGGATAGAGGGC
ACCGTGGAGCGCGTGGCCGAGGCCGAGAGCCAAGCGTACTTCAATAGCCG
CCCCCGTGGGAGCCGGATCGGAGCGTGGGCCTCAAACCAAAGCCGTCCCA
TCGGATCCCGCGCCGCCTTGGAAGCGCAATACGAAGATGTGTGCGCGCGG
TTTGGGGGCGAAAAAGAGGAAGATAACGAGGGGCAGGTCCAGCCGGTCCC
AAAGCCTGAGCATTGGGGTGGTTTCCGATTGGTGCCGGAGAGAGTGGAGT
TTTGGAAGGGAAGGCAGTCGCGCTTGCACGATCGATTGGCATATGCGTTG
TTGCAGGAGGAGGGGAAAGCGGGTGGGAGGAAGTGGGCGCTGGAGAGGTT
GCAGCCCTGAGCGAGAGCTGGAAGAAGAAGAAGATGGGGTGGACGGCAGG
CCTTTTGGGGGCCTAGATCCAGGTAACTTTTTGTGCTTCCTGCCTGGTTG
CTCAACCCTCTTTGTTTGTTGTTTGAAATTTGAGGGGACAGGAAAGGGGA
GGGGAATGGGAGAAGCACCGAGAAGGCGGTAGGATATGTAATGGCGTTGT
GTGTAAAGAGCTAGAAACCAAGATGAATCGTGACGAAAATGGCATGAGAG
AAAAGTGAGTTCGCGT
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protein sequence of NO11G01680.1

>NO11G01680.1-protein ID=NO11G01680.1-protein|Name=NO11G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MPGRLLYIFLTHTAAVVFACCMLSLPARGSARCTATAAAFLGASSSSLAL
PHFRQDHGQDSRRFLSSSTPMQAVADLRKEYSASGLEEHEVPSEPMTLFR
RWLDEAVAAKVVEPNAMCLSTVSADGKPSGRYVLLKGLDDRGFVWYTNYQ
SRKGQELAAAAFHVDGVDAPAAGPPACLTFWWGDLERSVRIEGTVERVAE
AESQAYFNSRPRGSRIGAWASNQSRPIGSRAALEAQYEDVCARFGGEKEE
DNEGQVQPVPKPEHWGGFRLVPERVEFWKGRQSRLHDRLAYALLQEEGKA
GGRKWALERLQP*
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mRNA from alignment at chr11:553386..554731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01680.1 ID=NO11G01680.1|Name=NO11G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp|location=Sequence derived from alignment at chr11:553386..554731- (Nannochloropsis oceanica)
AGGGCACGTGTCCTTCCATACATGCCTGGCCGTCTTCTCTACATCTTTCT
AACTCACACCGCTGCTGTCGTCTTCGCTTGCTGCATGCTATCTTTGCCTG
CTCGTGGAAGCGCCCGCTGCACGGCCACTGCTGCTGCCTTCCTTGGCGCA
TCGTCCTCCTCCCTCGCGCTCCCTCATTTCCGCCAAGATCACGGCCAGGA
CTCCCGTCGGTTCCTCTCATCCAGCACACCCATGCAGGCCGTCGCGGACC
TTCGGAAAGAATATTCGGCTTCGGGCCTGGAGGAGCATGAAGTGCCCTCC
GAACCTATGACCCTCTTTCGACGTTGGCTCGACGAGGCCGTCGCCGCGAA
AGTCGTCGAACCCAACGCCATGTGTTTGTCCACAGTCAGCGCGGATGGGA
AACCGTCGGGCCGGTATGTGTTGCTCAAGGGACTGGATGACCGAGGCTTT
GTCTGGTACACCAACTACCAATCGCGCAAAGGACAAGAGCTGGCAGCGGC
AGCTTTTCATGTGGACGGCGTCGATGGTACGCCCCCTCCCATCCTTACGG
TGCTATATCCTGTCTTACCTTTGTCCCCTCACTGTGTATCTGACTTTTAA
CATCCAGTCGATAAAATCCTTTAATCTCACATCATTTTCTCCTCTCGCGA
AAACAGCGCCAGCAGCAGGGCCACCAGCTTGCTTGACTTTTTGGTGGGGA
GATTTAGAACGATCCGTGAGGATAGAGGGCACCGTGGAGCGCGTGGCCGA
GGCCGAGAGCCAAGCGTACTTCAATAGCCGCCCCCGTGGGAGCCGGATCG
GAGCGTGGGCCTCAAACCAAAGCCGTCCCATCGGATCCCGCGCCGCCTTG
GAAGCGCAATACGAAGATGTGTGCGCGCGGTTTGGGGGCGAAAAAGAGGA
AGATAACGAGGGGCAGGTCCAGCCGGTCCCAAAGCCTGAGCATTGGGGTG
GTTTCCGATTGGTGCCGGAGAGAGTGGAGTTTTGGAAGGGAAGGCAGTCG
CGCTTGCACGATCGATTGGCATATGCGTTGTTGCAGGAGGAGGGGAAAGC
GGGTGGGAGGAAGTGGGCGCTGGAGAGGTTGCAGCCCTGAGCGAGAGCTG
GAAGAAGAAGAAGATGGGGTGGACGGCAGGCCTTTTGGGGGCCTAGATCC
AGGTAACTTTTTGTGCTTCCTGCCTGGTTGCTCAACCCTCTTTGTTTGTT
GTTTGAAATTTGAGGGGACAGGAAAGGGGAGGGGAATGGGAGAAGCACCG
AGAAGGCGGTAGGATATGTAATGGCGTTGTGTGTAAAGAGCTAGAAACCA
AGATGAATCGTGACGAAAATGGCATGAGAGAAAAGTGAGTTCGCGT
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Coding sequence (CDS) from alignment at chr11:553386..554731-

>NO11G01680.1 ID=NO11G01680.1|Name=NO11G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr11:553386..554731- (Nannochloropsis oceanica)
ATGCCTGGCCGTCTTCTCTACATCTTTCTAACTCACACCGCTGCTGTCGT
CTTCGCTTGCTGCATGCTATCTTTGCCTGCTCGTGGAAGCGCCCGCTGCA
CGGCCACTGCTGCTGCCTTCCTTGGCGCATCGTCCTCCTCCCTCGCGCTC
CCTCATTTCCGCCAAGATCACGGCCAGGACTCCCGTCGGTTCCTCTCATC
CAGCACACCCATGCAGGCCGTCGCGGACCTTCGGAAAGAATATTCGGCTT
CGGGCCTGGAGGAGCATGAAGTGCCCTCCGAACCTATGACCCTCTTTCGA
CGTTGGCTCGACGAGGCCGTCGCCGCGAAAGTCGTCGAACCCAACGCCAT
GTGTTTGTCCACAGTCAGCGCGGATGGGAAACCGTCGGGCCGGTATGTGT
TGCTCAAGGGACTGGATGACCGAGGCTTTGTCTGGTACACCAACTACCAA
TCGCGCAAAGGACAAGAGCTGGCAGCGGCAGCTTTTCATGTGGACGGCGT
CGATGCGCCAGCAGCAGGGCCACCAGCTTGCTTGACTTTTTGGTGGGGAG
ATTTAGAACGATCCGTGAGGATAGAGGGCACCGTGGAGCGCGTGGCCGAG
GCCGAGAGCCAAGCGTACTTCAATAGCCGCCCCCGTGGGAGCCGGATCGG
AGCGTGGGCCTCAAACCAAAGCCGTCCCATCGGATCCCGCGCCGCCTTGG
AAGCGCAATACGAAGATGTGTGCGCGCGGTTTGGGGGCGAAAAAGAGGAA
GATAACGAGGGGCAGGTCCAGCCGGTCCCAAAGCCTGAGCATTGGGGTGG
TTTCCGATTGGTGCCGGAGAGAGTGGAGTTTTGGAAGGGAAGGCAGTCGC
GCTTGCACGATCGATTGGCATATGCGTTGTTGCAGGAGGAGGGGAAAGCG
GGTGGGAGGAAGTGGGCGCTGGAGAGGTTGCAGCCCTGA
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Synonyms
Publications