NO11G01660.1, NO11G01660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01660.1
Unique NameNO11G01660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1492
Alignment locationchr11:548930..550539 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:548930..550539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01660.1 vs.
Match: EWM25024.1 (choline-phosphate cytidylyltransferase b [Nannochloropsis gaditana])

HSP 1 Score: 488.8 bits (1257), Expect = 1.600e-134
Identity = 277/412 (67.23%), Postives = 322/412 (78.16%), Query Frame = 0 
Query:    1 MVVRQKRSEVCKSNGTSDSSKR--PRALKEEEEETGRQQ-DNLHPRHQQPHTSTITSSSSTFISSSSSSFSSSVKLRSQSPETT---VPRHQQGR--LSSFASSS-SFPDSSSSSSSSSSSAASSSEDEGETDEGEREQIDYRPKLELLQEGDRGTLTGMPVRLYADGIFDLFHFGHAKALEQAKKLYPHTHLMVGCCSDSVTHQYKGITVMSEDERYESLRHCKWVDEVVEDAPWVVNDEFLAKHNIDYVCHDALPYADTSGQADDGDVYSHLKRNGKFLETQRTDGISTSDIINRVIVHYDDYVLRQLQRGYSAKEMNVPQWKETTLLTRKYLHDVATTTTKTIGDFQHSFISLFNRNSDIRCTLRKRRKETWHRMSSLFRTPFIAAEVEGMQSVG------PVSKKMKR 398
            M  RQKR++V K NG S  SKR   RAL EE E T  Q+ D++H    Q    T  +SSS  +S SSSS SSS  + S SP      V + +  R  LSSF+ S+ + P SSSSSSSS S+++  SEDEGET E      D +PKL+LLQEGD GTLTG+P+RLYADG+FDLFHFGH KALEQAKKLYPHT+LMVGCCSD+ TH+YKGITV+SE+ERYESLRHC+WVDEV+EDAPWV + +FL +HNIDYVCHDALPYADTSG+A+DGDVY HLKR GKFLETQRT+GISTSDIINR+IV YDDYVLRQLQRGYSAKEMNVPQWK TTLLT+KYLHDVATTT+KT+G+ Q SF+ LFNRNSDIRCTLRKRRKETWHR+S+L +TPF+     G    G      PVSKK+KR
Sbjct:    1 MTARQKRADVNK-NGDSGGSKRLRERALGEETEATSEQRRDSVHLNEDQLQQPTAVTSSSASLSLSSSSSSSS-SISSPSPRRQGIFVEKAETRRHFLSSFSQSNPASPPSSSSSSSSLSASSVPSEDEGETYEVGHN--DLKPKLDLLQEGDPGTLTGVPIRLYADGVFDLFHFGHTKALEQAKKLYPHTYLMVGCCSDATTHRYKGITVLSEEERYESLRHCRWVDEVIEDAPWVAHKDFLVEHNIDYVCHDALPYADTSGEAEDGDVYLHLKRMGKFLETQRTEGISTSDIINRIIVRYDDYVLRQLQRGYSAKEMNVPQWKGTTLLTKKYLHDVATTTSKTLGELQLSFLDLFNRNSDIRCTLRKRRKETWHRVSALLKTPFVVMGEGGKTKRGWNAAGAPVSKKLKR 408
The following BLAST results are available for this feature:
BLAST of NO11G01660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25024.11.600e-13467.23choline-phosphate cytidylyltransferase b [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01660NO11G01660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01660.1NO11G01660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01660.1.cds1NO11G01660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01660.1.cds2NO11G01660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01660.1 ID=NO11G01660.1|Name=NO11G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1492bp
CAGCCCTCTGCACTGCTCGGCCGCCTTCCCAGTGCTATCGTTGCCCGTTA
CCCACACGTGCTCCTCCCATTTCAAGTGCTGTCTTTCCAGCGTCAGCCCA
GCGGGTTCTCTCACCACCCCGAAGGCAGTATGGTTGTCCGGCAGAAGCGC
AGCGAGGTGTGCAAGAGCAATGGCACGAGCGATAGCAGCAAACGCCCCAG
GGCATTGAAAGAAGAGGAAGAGGAGACGGGGCGGCAGCAGGACAACCTGC
ATCCCCGTCACCAACAGCCACATACCTCCACCATCACCTCCTCTTCCTCA
ACTTTTATCTCTTCTTCCTCGTCGTCCTTCTCTTCTTCCGTAAAATTGAG
GTCCCAAAGCCCCGAAACGACTGTCCCCAGACATCAACAAGGGCGTCTCT
CCTCCTTCGCCTCCTCTTCCTCTTTTCCCGACTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCGCGGCTTCCTCCTCGGAAGACGAAGGCGAGACGGA
CGAGGGAGAGAGGGAACAGATCGATTACCGGCCCAAACTTGAACTCCTAC
AAGAAGGAGACCGGGGGACGTTGACTGGAATGCCGGTCCGTCTCTACGCC
GACGGTATTTTTGATTTGTTTCACTTTGGCCATGCTAAGGCCTTGGAGCA
GGCAAAAAAGCTGTATCCTCACACACATTTGATGGTGGGGTGTTGCAGTG
ATTCCGTTACTCACCAGTACAAAGGGATTACGGTCATGTCGGAAGACGAG
CGGTATGAGAGCTTGAGGCATTGCAAGTGGGTGGATGAGGTGGTGGAGGA
CGCACCGTGGGTTGTCAATGACGAGTTTTTGGCAAAGCATAATATAGATT
ATGTGTGCCATGATGCGTTGCCGTACGCGGATACGTCGGGGCAGGCGGAT
GACGGGGACGTGTATTCGCACTTGAAGCGGAACGGGAAGTTCTTGGAGAC
GCAGAGGACGGACGGCATCTCCACGTCGGACATAATTAACCGAGTGATCG
TGCACTACGACGACTACGTCCTCCGGCAGCTCCAACGGGGCTACAGCGCC
AAGGAGATGAATGTACCCCAATGGAAGGAGACGACTCTGCTAACCAGAAA
ATACTTGCATGACGTTGCCACTACCACCACCAAGACCATAGGGGATTTTC
AGCACTCCTTCATTAGCCTTTTTAATCGGAATTCCGACATTCGCTGTACG
TTGAGGAAGAGGAGGAAGGAGACCTGGCATCGGATGAGCTCGCTTTTCCG
CACACCTTTTATAGCCGCCGAAGTTGAGGGCATGCAGAGCGTTGGCCCGG
TGAGCAAGAAAATGAAGCGGTAAAAGGAGTAAGGTGTGAACGAGGAGAAG
GAAACAATGTGTTCGCGTATTTCCAATTTTTTGTGACTTCTTTTGCCCTA
CCTTTCTGCGACGAAGAGCCAAAGTGCAGGGGAAGAAAAACTTCAAAAGG
AGTCCTGTTCAACCAAAAGCTGGAGGGAGGGAAGGAGGGAGG
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protein sequence of NO11G01660.1

>NO11G01660.1-protein ID=NO11G01660.1-protein|Name=NO11G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MVVRQKRSEVCKSNGTSDSSKRPRALKEEEEETGRQQDNLHPRHQQPHTS
TITSSSSTFISSSSSSFSSSVKLRSQSPETTVPRHQQGRLSSFASSSSFP
DSSSSSSSSSSSAASSSEDEGETDEGEREQIDYRPKLELLQEGDRGTLTG
MPVRLYADGIFDLFHFGHAKALEQAKKLYPHTHLMVGCCSDSVTHQYKGI
TVMSEDERYESLRHCKWVDEVVEDAPWVVNDEFLAKHNIDYVCHDALPYA
DTSGQADDGDVYSHLKRNGKFLETQRTDGISTSDIINRVIVHYDDYVLRQ
LQRGYSAKEMNVPQWKETTLLTRKYLHDVATTTTKTIGDFQHSFISLFNR
NSDIRCTLRKRRKETWHRMSSLFRTPFIAAEVEGMQSVGPVSKKMKR*
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mRNA from alignment at chr11:548930..550539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01660.1 ID=NO11G01660.1|Name=NO11G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp|location=Sequence derived from alignment at chr11:548930..550539- (Nannochloropsis oceanica)
CAGCCCTCTGCACTGCTCGGCCGCCTTCCCAGTGCTATCGTTGCCCGTTA
CCCACACGTGCTCCTCCCATTTCAAGTGCTGTCTTTCCAGCGTCAGCCCA
GCGGGTTCTCTCACCACCCCGAAGGCAGTATGGTTGTCCGGCAGAAGCGC
AGCGAGGTGTGCAAGAGCAATGGCACGAGCGATAGCAGCAAACGCCCCAG
GGCATTGAAAGAAGAGGAAGAGGAGACGGGGCGGCAGCAGGACAACCTGC
ATCCCCGTCACCAACAGCCACATACCTCCACCATCACCTCCTCTTCCTCA
ACTTTTATCTCTTCTTCCTCGTCGTCCTTCTCTTCTTCCGTAAAATTGAG
GTCCCAAAGCCCCGAAACGACTGTCCCCAGACATCAACAAGGGCGTCTCT
CCTCCTTCGCCTCCTCTTCCTCTTTTCCCGACTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCGCGGCTTCCTCCTCGGAAGACGAAGGCGAGACGGA
CGAGGGAGAGAGGGAACAGATCGATTACCGGCCCAAACTTGAACTCCTAC
AAGAAGGAGACCGGGGGACGTTGACTGGAATGCCGGTCCGTCTCTACGCC
GACGGTATTTTTGATTTGTTTCACTTTGGCCATGCTAAGGCCTTGGAGCA
GGCAAAAAAGCTGTATCCTCACACACATTTGATGGTGGGGTGTTGCAGTG
ATTCCGTTACTCACCAGTACAAAGGGATTACGGTCATGTCGGAAGACGAG
CGGTATGAGAGCTTGAGGCATTGCAAGTGGGTGGATGAGGTGGTGGAGGA
CGCACCGTGGGTTGTCAATGACGAGTTTTTGGCAAAGCATAATATAGATT
ATGTGTGCCATGATGCGTTGCCGTACGCGGATACGTCGGGGCAGGCGGAT
GACGGGGACGTGTATTCGCACTTGAAGCGGAACGGGAAGTTCTTGGAGAC
GCAGAGGACGGACGGCATCTCCACGTCGGACATAATTAACCGAGGTACGT
AGTGTAAGAAGGGAGGGGAGGAAGAGGGGAGCGTGATGTTCATCTTAATG
TATATTCCTGATTTTGATCCCTCCTCCCCTTCTTCCCTCCCTCCTTCCTC
GCCGTCCTTCAGTGATCGTGCACTACGACGACTACGTCCTCCGGCAGCTC
CAACGGGGCTACAGCGCCAAGGAGATGAATGTACCCCAATGGAAGGAGAC
GACTCTGCTAACCAGAAAATACTTGCATGACGTTGCCACTACCACCACCA
AGACCATAGGGGATTTTCAGCACTCCTTCATTAGCCTTTTTAATCGGAAT
TCCGACATTCGCTGTACGTTGAGGAAGAGGAGGAAGGAGACCTGGCATCG
GATGAGCTCGCTTTTCCGCACACCTTTTATAGCCGCCGAAGTTGAGGGCA
TGCAGAGCGTTGGCCCGGTGAGCAAGAAAATGAAGCGGTAAAAGGAGTAA
GGTGTGAACGAGGAGAAGGAAACAATGTGTTCGCGTATTTCCAATTTTTT
GTGACTTCTTTTGCCCTACCTTTCTGCGACGAAGAGCCAAAGTGCAGGGG
AAGAAAAACTTCAAAAGGAGTCCTGTTCAACCAAAAGCTGGAGGGAGGGA
AGGAGGGAGG
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Coding sequence (CDS) from alignment at chr11:548930..550539-

>NO11G01660.1 ID=NO11G01660.1|Name=NO11G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr11:548930..550539- (Nannochloropsis oceanica)
ATGGTTGTCCGGCAGAAGCGCAGCGAGGTGTGCAAGAGCAATGGCACGAG
CGATAGCAGCAAACGCCCCAGGGCATTGAAAGAAGAGGAAGAGGAGACGG
GGCGGCAGCAGGACAACCTGCATCCCCGTCACCAACAGCCACATACCTCC
ACCATCACCTCCTCTTCCTCAACTTTTATCTCTTCTTCCTCGTCGTCCTT
CTCTTCTTCCGTAAAATTGAGGTCCCAAAGCCCCGAAACGACTGTCCCCA
GACATCAACAAGGGCGTCTCTCCTCCTTCGCCTCCTCTTCCTCTTTTCCC
GACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCGGCTTCCTCCTC
GGAAGACGAAGGCGAGACGGACGAGGGAGAGAGGGAACAGATCGATTACC
GGCCCAAACTTGAACTCCTACAAGAAGGAGACCGGGGGACGTTGACTGGA
ATGCCGGTCCGTCTCTACGCCGACGGTATTTTTGATTTGTTTCACTTTGG
CCATGCTAAGGCCTTGGAGCAGGCAAAAAAGCTGTATCCTCACACACATT
TGATGGTGGGGTGTTGCAGTGATTCCGTTACTCACCAGTACAAAGGGATT
ACGGTCATGTCGGAAGACGAGCGGTATGAGAGCTTGAGGCATTGCAAGTG
GGTGGATGAGGTGGTGGAGGACGCACCGTGGGTTGTCAATGACGAGTTTT
TGGCAAAGCATAATATAGATTATGTGTGCCATGATGCGTTGCCGTACGCG
GATACGTCGGGGCAGGCGGATGACGGGGACGTGTATTCGCACTTGAAGCG
GAACGGGAAGTTCTTGGAGACGCAGAGGACGGACGGCATCTCCACGTCGG
ACATAATTAACCGAGTGATCGTGCACTACGACGACTACGTCCTCCGGCAG
CTCCAACGGGGCTACAGCGCCAAGGAGATGAATGTACCCCAATGGAAGGA
GACGACTCTGCTAACCAGAAAATACTTGCATGACGTTGCCACTACCACCA
CCAAGACCATAGGGGATTTTCAGCACTCCTTCATTAGCCTTTTTAATCGG
AATTCCGACATTCGCTGTACGTTGAGGAAGAGGAGGAAGGAGACCTGGCA
TCGGATGAGCTCGCTTTTCCGCACACCTTTTATAGCCGCCGAAGTTGAGG
GCATGCAGAGCGTTGGCCCGGTGAGCAAGAAAATGAAGCGGTAA
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Synonyms
Publications