NO11G01650.1, NO11G01650.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01650.1
Unique NameNO11G01650.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1911
Alignment locationchr11:546195..548243 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:546195..548243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01650.1 vs.
Match: EWM25046.1 (hypothetical protein Naga_100049g33 [Nannochloropsis gaditana])

HSP 1 Score: 521.2 bits (1341), Expect = 3.100e-144
Identity = 262/362 (72.38%), Postives = 300/362 (82.87%), Query Frame = 0 
Query:   66 LVLLAGPGHAYRPPHQP-FHQQQHHRKDALQRTTGAAAATAAAFFGPSIFIPQPSAA--VDTAEVGSQVPPPPIQ-------PQSKLLQKFLTTDLTSPGLSGFGGAKILFLPPFLFGTWNATLCLKSIDLPLGERFVPPQVLRSLNAVEMEKPTSFLLRFYSTLPDTTENTLRVTLGEVPKSEVVPDRVYNTRSVLDAFYGYPAVGEIDYDLARNPLKMDVAFATMGPDMKPLPSRRQQLLFNNLQSERVRPDDLFVCSEYVRTVTVGPGRRVTVTDSETLSQYELVKEGRIEGKQRVALYLTPNPNTAEGALFFETNNKAVTIFDYSFVMQKVGDCVLTPKGVEQCVGSDGGGGYIKEPV 418
            L+ +    H+Y+    P FHQ  +HRK+ALQ++ G A+ATAA + GP + +PQP+ A  +D  E  S    P          P+SKLL +F T+DLTSPGLSG GGAK+LFLP FLFGTWNATLCLK I LPLGERFVPPQ+LRSLNAV+MEKPTSF LRFYSTLPDT ENTLRVTLGEVPKSE+VPDRVYNTRSVLDAFYGYPAVGEIDYD+++NPL+MDVAFATMGPD++PLPSRRQQLLFNNLQS+RVRP+DLFVCSEYVRTVT+GPGRRVTVTDSETLSQYEL+++GRIEGKQRVA YLTPNPNT EG LFFE NNKAV +FDYSF M+KVGDCV+TPK VEQC   +G    + EPV
Sbjct:   12 LLFIVNSAHSYQISRSPQFHQ--YHRKEALQQSAGIASATAAVWLGP-LSVPQPAEATGLDNVEPTSSTTSPDTPAINPDTTPRSKLLARFSTSDLTSPGLSGLGGAKLLFLPQFLFGTWNATLCLKDIQLPLGERFVPPQILRSLNAVQMEKPTSFPLRFYSTLPDTGENTLRVTLGEVPKSEIVPDRVYNTRSVLDAFYGYPAVGEIDYDISKNPLRMDVAFATMGPDLQPLPSRRQQLLFNNLQSDRVRPNDLFVCSEYVRTVTLGPGRRVTVTDSETLSQYELMEDGRIEGKQRVAFYLTPNPNTVEGTLFFEANNKAVALFDYSFTMKKVGDCVMTPKAVEQCTAPEGSYVKVNEPV 370
The following BLAST results are available for this feature:
BLAST of NO11G01650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25046.13.100e-14472.38hypothetical protein Naga_100049g33 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01650NO11G01650Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01650.1NO11G01650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01650.1.cds1NO11G01650.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01650.1.cds2NO11G01650.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01650.1 ID=NO11G01650.1|Name=NO11G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1911bp
ATAAAAAGGAGGAAGGCGGCGGGTGGCGGCATGTTTTTAAGTTTTAATTT
GTAAGGGTGTGTGTGTTGTTAACAAGTGCACGCAATGATAATAATCATCA
AACGAAGCCCAAAGGCTGGGACAAGAAAGCCCCCTTGCTGTGGAGAGACG
GTAATGCACCAAAGCACGAAATATACACTCTCCAAGCGAAGAAGGGGCTT
CGTAGGACCCTATAACCCAGACTGGTCTGACAAGTTGACCCGACAAACAC
CACAACATTATTTTACATGCTGCCAGTGACTCGGACAAGATCCGGAAGAC
CCGTAAAATGAGATGCTCACAAAAAAATGCAAAAGCACTGCGTTCACTTA
CTCAAATCCGCCCAATAAACCTGTACAGACTGCATCCACAAGACCTCCAC
GTCGTGCCCTATCCCTCATCTCCCCGTCGCCAGTGGGTCCCTCTCCTCAC
AAACTAAAACTTAAAAGCATGCCGCTACCCGCCGCCTTCCTCCTTTTTAT
CGCATCACTGGTACTCCTCGCTGGGCCCGGCCACGCATACCGACCACCCC
ATCAGCCATTCCATCAGCAGCAGCACCACCGCAAAGATGCCCTTCAACGC
ACGACAGGAGCTGCCGCTGCGACTGCCGCTGCATTTTTTGGCCCCTCGAT
ATTTATACCACAGCCCTCAGCGGCAGTCGACACAGCCGAAGTCGGTAGCC
AGGTCCCCCCTCCTCCTATCCAACCCCAAAGCAAGCTTCTTCAAAAGTTC
CTCACCACAGATCTGACCAGTCCGGGCCTTTCTGGTTTTGGTGGTGCCAA
AATTCTGTTCCTACCGCCGTTTTTGTTCGGGACCTGGAATGCCACCCTCT
GCCTGAAGAGCATCGATCTCCCCCTTGGAGAGCGCTTTGTGCCCCCCCAA
GTTCTCCGCTCCCTCAACGCCGTAGAAATGGAAAAGCCAACGTCGTTCCT
ACTCCGGTTCTACTCCACCCTGCCGGACACGACCGAGAACACTTTGCGTG
TCACTTTGGGGGAAGTGCCTAAATCGGAAGTTGTCCCTGATCGCGTTTAC
AACACACGTTCCGTCCTCGATGCGTTCTACGGGTACCCAGCCGTGGGTGA
AATTGATTACGACTTGGCAAGAAATCCTTTGAAAATGGACGTGGCTTTCG
CGACGATGGGTCCAGATATGAAGCCATTACCTTCTAGGAGACAGCAATTG
TTGTTTAATAACCTGCAGAGCGAACGGGTGCGACCTGATGACTTATTTGT
CTGTTCTGAGTACGTCCGCACGGTCACGGTGGGACCGGGAAGAAGAGTAA
CGGTGACAGATTCAGAAACATTGTCGCAGTATGAGTTGGTGAAAGAGGGG
AGGATAGAGGGCAAGCAACGCGTGGCGCTTTATTTGACACCCAATCCCAA
CACTGCGGAAGGAGCCTTGTTTTTTGAGACGAACAATAAGGCAGTTACAA
TTTTTGACTACTCGTTCGTGATGCAAAAGGTGGGAGACTGTGTGCTGACT
CCCAAAGGAGTGGAGCAATGCGTTGGGTCGGATGGAGGGGGAGGGTATAT
TAAAGAACCAGTGCAGACAGAGGGGGAGGGGGGCGAGTTGTAGTAGTGTT
GGCCGCAGTAGCAGAATATAGGAATTTGCATGAAAACTGACAAACGGTGA
TGACGACAGGTAACGACAAAGGTGAAATCATACGTAAATATGCTAGTTTA
AAAAATTGTCTTGTAGAGGGAGGGAGAGACGAGACGTAAAATTATAAACT
AGATGAACAACAGTCTGGCAAGGACAGGAGGATATCATCGGAAAAGCACT
GTGTGTTAAAAATGGAGATAAACGAGTTCCTCATGGCCATTCGTTTTCTG
ACGGCAGGGAGGGTCAGGAGGGATCGGAACGCGTGAGTAATGTAAAAGCA
AGCAGATGGCA
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protein sequence of NO11G01650.1

>NO11G01650.1-protein ID=NO11G01650.1-protein|Name=NO11G01650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp
MLTKKCKSTAFTYSNPPNKPVQTASTRPPRRALSLISPSPVGPSPHKLKL
KSMPLPAAFLLFIASLVLLAGPGHAYRPPHQPFHQQQHHRKDALQRTTGA
AAATAAAFFGPSIFIPQPSAAVDTAEVGSQVPPPPIQPQSKLLQKFLTTD
LTSPGLSGFGGAKILFLPPFLFGTWNATLCLKSIDLPLGERFVPPQVLRS
LNAVEMEKPTSFLLRFYSTLPDTTENTLRVTLGEVPKSEVVPDRVYNTRS
VLDAFYGYPAVGEIDYDLARNPLKMDVAFATMGPDMKPLPSRRQQLLFNN
LQSERVRPDDLFVCSEYVRTVTVGPGRRVTVTDSETLSQYELVKEGRIEG
KQRVALYLTPNPNTAEGALFFETNNKAVTIFDYSFVMQKVGDCVLTPKGV
EQCVGSDGGGGYIKEPVQTEGEGGEL*
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mRNA from alignment at chr11:546195..548243+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01650.1 ID=NO11G01650.1|Name=NO11G01650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp|location=Sequence derived from alignment at chr11:546195..548243+ (Nannochloropsis oceanica)
ATAAAAAGGAGGAAGGCGGCGGGTGGCGGCATGTTTTTAAGTTTTAATTT
GTAAGGGTGTGTGTGTTGTTAACAAGTGCACGCAATGATAATAATCATCA
AACGAAGCCCAAAGGCTGGGACAAGAAAGCCCCCTTGCTGTGGAGAGACG
GTAATGCACCAAAGCACGAAATATACACTCTCCAAGCGAAGAAGGGGCTT
CGTAGGACCCTATAACCCAGACTGGTCTGACAAGTTGACCCGACAAACAC
CACAACATTATTTTACATGCTGCCAGTGACTCGGACAAGATCCGGAAGAC
CCGTAAAATGAGATGCTCACAAAAAAATGCAAAAGCACTGCGTTCACTTA
CTCAAATCCGCCCAATAAACCTGTACAGACTGCATCCACAAGACCTCCAC
GTCGTGCCCTATCCCTCATCTCCCCGTCGCCAGTGGGTCCCTCTCCTCAC
AAACTAAAACTTAAAAGCATGCCGCTACCCGCCGCCTTCCTCCTTTTTAT
CGCATCACTGGTACTCCTCGCTGGGCCCGGCCACGCATACCGACCACCCC
ATCAGCCATTCCATCAGCAGCAGCACCACCGCAAAGATGCCCTTCAACGC
ACGACAGGAGCTGCCGCTGCGACTGCCGCTGCATTTTTTGGCCCCTCGAT
ATTTATACCACAGCCCTCAGCGGCAGTCGACACAGCCGAAGTCGGTAGCC
AGGTCCCCCCTCCTCCTATCCAACCCCAAAGCAAGCTTCTTCAAAAGTTC
CTCACCACAGATCTGACCAGTCCGGGCCTTTCTGGTTTTGGTGGTGCCAA
AATTCTGTTCCTACCGCCGTTTTTGTTCGGGACCTGGAATGCCACCCTCT
GCCTGAAGAGCATCGATCTCCCCCTTGGAGAGCGCTTTGTGCCCCCCCAA
GTTCTCCGCTCCCTCAACGCCGTAGAAATGGAAAAGCCAACGTCGTTCCT
ACTCCGGTTCTACTCCACCCTGCCGGACACGACCGAGAACACTTTGCGTG
TCACTTTGGGGGAAGTGCCTAAATCGGAAGTTGTCCCTGATCGCGTTTAC
AACACACGTTCCGTCCTCGATGCGTTCTACGGGTACCCAGCCGTGGGTGA
AATTGATTACGACTTGGCAAGAAATCCTTTGAAAATGGACGTGGCTTTCG
CGACGATGGGTCCAGATATGAAGCCATTACCTTCTAGGAGACAGCAATTG
TTGTTTAATAACCTGCAGAGCGAACGGGTGCGACCTGATGACTTATTTGT
CTGTTCTGAGTACGTCCGCACGGTCACGGTGGGACCGGGAAGAAGAGTAA
CGGTGACAGATTCAGAAACATTGTCGCAGTATGAGTTGGTGAAAGAGGGG
AGGATAGAGGGCAAGCAACGCGTGGCGCTTTATTTGACACCCAATCCCAA
CACTGCGGAAGGAGCCTTGTTTTTTGAGACGAACAATAAGGTTTGTGTTT
CTCTCTCCCTCCCTTTCCCTCTGTCTCCCCTCTTGTCGATCTCTCCCTCC
TCTATATTTCTCTTTCTTTTTCTTTCCTCTTTTCCCCGCGCTTATGTACC
TCCTCCCCTCCCTTACTCTCTCCCACAGGCAGTTACAATTTTTGACTACT
CGTTCGTGATGCAAAAGGTGGGAGACTGTGTGCTGACTCCCAAAGGAGTG
GAGCAATGCGTTGGGTCGGATGGAGGGGGAGGGTATATTAAAGAACCAGT
GCAGACAGAGGGGGAGGGGGGCGAGTTGTAGTAGTGTTGGCCGCAGTAGC
AGAATATAGGAATTTGCATGAAAACTGACAAACGGTGATGACGACAGGTA
ACGACAAAGGTGAAATCATACGTAAATATGCTAGTTTAAAAAATTGTCTT
GTAGAGGGAGGGAGAGACGAGACGTAAAATTATAAACTAGATGAACAACA
GTCTGGCAAGGACAGGAGGATATCATCGGAAAAGCACTGTGTGTTAAAAA
TGGAGATAAACGAGTTCCTCATGGCCATTCGTTTTCTGACGGCAGGGAGG
GTCAGGAGGGATCGGAACGCGTGAGTAATGTAAAAGCAAGCAGATGGCA
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Coding sequence (CDS) from alignment at chr11:546195..548243+

>NO11G01650.1 ID=NO11G01650.1|Name=NO11G01650.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr11:546195..548243+ (Nannochloropsis oceanica)
ATGCTCACAAAAAAATGCAAAAGCACTGCGTTCACTTACTCAAATCCGCC
CAATAAACCTGTACAGACTGCATCCACAAGACCTCCACGTCGTGCCCTAT
CCCTCATCTCCCCGTCGCCAGTGGGTCCCTCTCCTCACAAACTAAAACTT
AAAAGCATGCCGCTACCCGCCGCCTTCCTCCTTTTTATCGCATCACTGGT
ACTCCTCGCTGGGCCCGGCCACGCATACCGACCACCCCATCAGCCATTCC
ATCAGCAGCAGCACCACCGCAAAGATGCCCTTCAACGCACGACAGGAGCT
GCCGCTGCGACTGCCGCTGCATTTTTTGGCCCCTCGATATTTATACCACA
GCCCTCAGCGGCAGTCGACACAGCCGAAGTCGGTAGCCAGGTCCCCCCTC
CTCCTATCCAACCCCAAAGCAAGCTTCTTCAAAAGTTCCTCACCACAGAT
CTGACCAGTCCGGGCCTTTCTGGTTTTGGTGGTGCCAAAATTCTGTTCCT
ACCGCCGTTTTTGTTCGGGACCTGGAATGCCACCCTCTGCCTGAAGAGCA
TCGATCTCCCCCTTGGAGAGCGCTTTGTGCCCCCCCAAGTTCTCCGCTCC
CTCAACGCCGTAGAAATGGAAAAGCCAACGTCGTTCCTACTCCGGTTCTA
CTCCACCCTGCCGGACACGACCGAGAACACTTTGCGTGTCACTTTGGGGG
AAGTGCCTAAATCGGAAGTTGTCCCTGATCGCGTTTACAACACACGTTCC
GTCCTCGATGCGTTCTACGGGTACCCAGCCGTGGGTGAAATTGATTACGA
CTTGGCAAGAAATCCTTTGAAAATGGACGTGGCTTTCGCGACGATGGGTC
CAGATATGAAGCCATTACCTTCTAGGAGACAGCAATTGTTGTTTAATAAC
CTGCAGAGCGAACGGGTGCGACCTGATGACTTATTTGTCTGTTCTGAGTA
CGTCCGCACGGTCACGGTGGGACCGGGAAGAAGAGTAACGGTGACAGATT
CAGAAACATTGTCGCAGTATGAGTTGGTGAAAGAGGGGAGGATAGAGGGC
AAGCAACGCGTGGCGCTTTATTTGACACCCAATCCCAACACTGCGGAAGG
AGCCTTGTTTTTTGAGACGAACAATAAGGCAGTTACAATTTTTGACTACT
CGTTCGTGATGCAAAAGGTGGGAGACTGTGTGCTGACTCCCAAAGGAGTG
GAGCAATGCGTTGGGTCGGATGGAGGGGGAGGGTATATTAAAGAACCAGT
GCAGACAGAGGGGGAGGGGGGCGAGTTGTAG
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Synonyms
Publications