NO11G01640.1, NO11G01640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01640.1
Unique NameNO11G01640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3929
Alignment locationchr11:542086..546136 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:542086..546136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO11G01640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01640NO11G01640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01640.1NO11G01640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01640.1.cds1NO11G01640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01640.1 ID=NO11G01640.1|Name=NO11G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=3929bp
TTCCATCAGCAGCAGCACCACCGCTCTTTGTGCCCCTAAGGGAGGCTTGA
CCTTTTTCACAGCCCACAGTGCGCTTGGGGACCAAAGCTTGATGGAGGGC
CTTCAGGCGCTCCTTGGCGGAGCTTTAAGTGTGGGGCTTCCTTTTGGAGG
GTTCGCTACGCGAGGTGCCAATGTGCCCCTTCCACTAGCAACTGCCTCCA
CAGAGGGTGTTCCCAGAGGGCAGCACCTACACTCATATAGAAGTATCGCA
TGCAACCTGACGTCCTCTAGGACTTACAAGGGGGGAGTCCCTCAACAATA
AAATGTTGCCTATTCACCCCTTATTCTTGTCCGAGTTTTCCAGCGACTTT
GACAGGTTTTTATCAGGCAAAGTTCCCGGACGTCCGCCAGTCAAAGTCGC
TAGTAAAACTCGGACAAGGAATAAGGGGTGAATATGCAACAATTTCTTTT
TGGAAGGCTCCTCCTCGTATGCAAGTCCTAGAGGACACAGGTTGCATGCG
ATAGTTCTAGAGGGATGTAGGAAGGAAGGAACTATATACTATACTACGGT
ACTCGGATAGATAGTAGTATAGGACACTGTCACTGGCATCACCGCTTTGT
TCCCCCCCTGGAGGACGTGATGCTCTTTGCTGTTGGTTACAAAGCAAACC
TGGGGTATGACAGGGGTTGAGACTTTCTCTCGAGTGTCTTTTAGAAAGGA
GACCCACACTAAAGAGTAGAGGGGGTCTATCCACCGCGAAAACCTTGACG
GTAAAATTCACGCCCACTTCCCACAATTTGTTCTTTTCTCGCACTTTGAG
GCTCGTTATTTGGTGTGTGTACAACCACGACAGACAATCAACCTCTAAAT
CTGTCTTTCCACCTATAAATGTACAGGTTTTCAAGGGTGGATGCTCCACA
TGCTCGCAAGGGGGGAGATTTGACGGGCCAACAGTCTGATCCCCCCATCA
TCAACCAACGAGTAATGGGTGATGGGCTACCCTCCCGCAAGCGCCTTGCG
GCCACTTTTACAGCGGACGTCTTGTCCCTCTCGGAAAGGGTAGTTAAAAT
AAAAAGCCAAGAGCTTCCATCGTGACACCACCGACATAATAAAAAAAACT
TCATACGCACATGGAGTATATACATATATAGGCGATATATTTAGGCGAGT
GGGGGAGCTCGATGCAGATCACATGACTCAGCGACTGTCTTCTAGATGCT
TGCTGATTACATGTACGAGGAGTGGAGGAAGGCACGTGTTGGGGCCTTTT
ACCGCCCCTCTCCTCCCGCAAGGTGGAAGGAGATGCCAGCTCAGACAGCT
CAGTGAAACGCTTTATGTGGCTGGTGGGCTCCTTGACAAGATCTGGAAGG
CGGCACGCCGAAAGGAAGGGGAGGAAGGGGATTGCGCGAGGCGGCGTCAT
CGCAAGCATTAGATTGGGGAGAATCACTCCCGGAGGCTTGGCCCTTTCTT
CGAGAGGGTGGCTGCTACAAGCCAGAAAGGAGTCATGTTTTCCTCTCCGT
TATGGTATGCGTATTTTACTTGTATGGAGGTGGTTTTGATGAACCTCATT
TCTATTGATTTTTTAATCCACGTGGGGCAGGATGTTGAGAAGGGTGGGAT
GTGGACTGCAGCGCTTGAGAAGATCTGCATGGATGAGGGGGTGACAAATG
CATGGAAAGCTCGCATGCAGAAGATATTAGCATACCGTGTAGACGTACCT
GCAGATGCGGTTGAAGGATGGTGCCGGCTCCATCCTTGCATCTCTCCTCC
TGCGTCTCGGAAATTCGATCCGCCCCGGCCTCCGCACTATCGGCAAGATA
GCGAAAGAGCGTGCGGAGAAGGAGAAGAGGGCGAGTCGAATGTCCATCTC
GAGGTTTTTACCCGTAGAGGGCACGGCCGTCGAGTACGCATGTTTACTCA
CGAGTCACTATGCCACCTTGGTGGCAAATATTCTCACGATGGATCTGGCA
AATGTGCGTGGAGTAGCATCTGAATTAGGTTTGCATTTAGCCACAGGTAC
GATACATGAGGGATGGCGGGAAAGGCGTCCCGAAGATAAAACCACCTTGG
AGGATTTGATAGACCTTGAGAGCACCGTGCCGTGTGCGCCACTTCTCAAG
GGGGGCCTAAAGCCGTCCTTTCAAATTAAAAATTTAGGGGATTTTGATGG
AAAGATTGGAGGGAGGGTGCGAGTGTATCTTCGACGGGGCCGGATCACTT
GATCCCATCAGTTGCAAACGCTGGATTGTTGCCTTCCAGAGACGGCTTCA
GAAAACAAGGGGTGCGAGCAGTTAGCTCGAAATCAATGCAGAGGATACCG
CATTGCATGGTAGTTGTAGTCGAAATATTGAGTGGGAACCTTTTGGGGTG
GGCATGCGCCAAACGGAATTCGACAGCTGCGCCAAAGAGGGGGGGCGAAT
GGAATGCGGGTGCAATGGCGCGGGACGGAAATGGAACTGCTTATCGCCAT
GCCGTACAAAAGACAAGCGGTCGCGCCTGTGCTTGCTACTGGACACGACT
CCTGAACTTTCAGCTGTATACTCGTCATACGTTGAACCACAGCTGAAGTG
CGTGTATTTAATTTTGAACGATGAGGGTAAAACGCTGACGTTGGTCCGCT
TCCAGCGGAGTAGTATCGAGGATGTCGCCTTCTCACACGCATGTCTGTGG
GGACTGTTATGGAGTGAAGGTCCATTCCACGGCGGATTCGGGCTCTCAAT
GCGGCTCTCGTGGGCAGTGTCGTCGAGAAAACCGTGGACGCACACGAGGA
ACTGGAGGCCGTGGAAGCTGAGGAAGCAAGATGCCGCTCCCTCCACCTAT
GTCGAGGTTATCATTGGTCGACTGGCCTTTTAGTAATTACAAGCTTCGAG
ATATCTACTGCGATGCCCGTTTAGACTGTCGGAGTCGTCAAACGCTTGCT
GTAGACTTTGTCAAGAAGATGACAGGATTGTCGCCAAAAACGGCATCATA
CATGATGATGAGCCTTGCGTGCGCTCGACCGCTGCCTCTTATGCCTCGGT
TGTTGGGGGTCTGCAGGTGGTGCGAGATTTTGCGGAATCTGATCTCGACA
AGACTTCATTTGGGCAAATACACGTGGCCGGCTATGCGTATGCACATGGG
CACAAAATGATTCGATAAATGGAAAAGGAGAAGGCGCAGTATCTGCAATG
CAGAAAATTTTGGATGATAAGCATTTAAGATTGTATGCTAATTCGAAGGA
ATTTGCTGGCCTTAAAAATGGCCAGTTACATGGAGAAATGGCGAGATGAT
CTGTTGAAAATAGATGACGTGACGAAAACCAATTTGAGCGAGCATTTCTT
CACTAGTAAGGCGTGCGAGGACTTCGTCATGGGTATGCGGGGAATGGTGG
GGTTTGTGCGAATGTGTTGTACGGAAAAGGGTTATGTACTACCGCACATG
CTTTCTTAGGACCATATAGAAGATCTGTTTGGTATTATGAAAGGGCTTCC
GCGGAAAGGAACGCTGACGGCCGAGAAAAGGGAAGAGGTGTCTCGGACTA
CTTTTATCTAAAAAAGTTTGACGATGTTCAAATCATCGGCCGGTTTTAAC
GTGGCCGGACGGCCCCTGATGGACACACACACCGGATACACATGACGAAG
TCCTCGTACGCCTTACTAGTAAAGAAATGCTCGCTCAAATTGGTTTTCGT
CACGTCATCTATTTTCAACAGATCATCTCGCCATTTCTCCATGTAACTGG
CCATTTTTAAGGCCAGCAAATTCCTTCGAATTAGCATACAATCTTAAATG
CTTATTATCCAAAATTTTGCGCACCTTCTTTTCTCCGAACGTGTGATATG
CCGACACATCTCAGAAGAGGGTTAGATCAATCTGATTCTTCGAATTCACC
CCAAGAGATCTCACACACCGCTGACTCTTATCCGAGGAAGAATGGCCAAC
AGCCTATCCGGAAAGCAAACCGTTCTCAA
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protein sequence of NO11G01640.1

>NO11G01640.1-protein ID=NO11G01640.1-protein|Name=NO11G01640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MRLKDGAGSILASLLLRLGNSIRPGLRTIGKIAKERAEKEKRASRMSISR
FLPVEGTAVEYACLLTSHYATLVANILTMDLANVRGVASELGLHLATGTI
HEGWRERRPEDKTTLEDLIDLESTVPCAPLLKGGLKPSFQIKNLGDFDGK
IGGRVRVYLRRGRIT*
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mRNA from alignment at chr11:542086..546136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01640.1 ID=NO11G01640.1|Name=NO11G01640.1|organism=Nannochloropsis oceanica|type=mRNA|length=4051bp|location=Sequence derived from alignment at chr11:542086..546136- (Nannochloropsis oceanica)
TTCCATCAGCAGCAGCACCACCGCTCTTTGTGCCCCTAAGGGAGGCTTGA CCTTTTTCACAGCCCACAGTGCGCTTGGGGACCAAAGCTTGATGGAGGGC CTTCAGGCGCTCCTTGGCGGAGCTTTAAGTGTGGGGCTTCCTTTTGGAGG GTTCGCTACGCGAGGTGCCAATGTGCCCCTTCCACTAGCAACTGCCTCCA CAGAGGGTGTTCCCAGAGGGCAGCACCTACACTCATATAGAAGTATCGCA TGCAACCTGACGTCCTCTAGGACTTACAAGGGGGGAGTCCCTCAACAATA AAATGTTGCCTATTCACCCCTTATTCTTGTCCGAGTTTTCCAGCGACTTT GACAGGTTTTTATCAGGCAAAGTTCCCGGACGTCCGCCAGTCAAAGTCGC TAGTAAAACTCGGACAAGGAATAAGGGGTGAATATGCAACAATTTCTTTT TGGAAGGCTCCTCCTCGTATGCAAGTCCTAGAGGACACAGGTTGCATGCG ATAGTTCTAGAGGGATGTAGGAAGGAAGGAACTATATACTATACTACGGT ACTCGGATAGATAGTAGTATAGGACACTGTCACTGGCATCACCGCTTTGT TCCCCCCCTGGAGGACGTGATGCTCTTTGCTGTTGGTTACAAAGCAAACC TGGGGTATGACAGGGGTTGAGACTTTCTCTCGAGTGTCTTTTAGAAAGGA GACCCACACTAAAGAGTAGAGGGGGTCTATCCACCGCGAAAACCTTGACG GTAAAATTCACGCCCACTTCCCACAATTTGTTCTTTTCTCGCACTTTGAG GCTCGTTATTTGGTGTGTGTACAACCACGACAGACAATCAACCTCTAAAT CTGTCTTTCCACCTATAAATGTACAGGTTTTCAAGGGTGGATGCTCCACA TGCTCGCAAGGGGGGAGATTTGACGGGCCAACAGTCTGATCCCCCCATCA TCAACCAACGAGTAATGGGTGATGGGCTACCCTCCCGCAAGCGCCTTGCG GCCACTTTTACAGCGGACGTCTTGTCCCTCTCGGAAAGGGTAGTTAAAAT AAAAAGCCAAGAGCTTCCATCGTGACACCACCGACATAATAAAAAAAACT TCATACGCACATGGAGTATATACATATATAGGCGATATATTTAGGCGAGT GGGGGAGCTCGATGCAGATCACATGACTCAGCGACTGTCTTCTAGATGCT TGCTGATTACATGTACGAGGAGTGGAGGAAGGCACGTGTTGGGGCCTTTT ACCGCCCCTCTCCTCCCGCAAGGTGGAAGGAGATGCCAGCTCAGGTAAGT TTTTTTTTATTCTTAATTTTTCCTTATTATTATTTTTAATGGTTATTCAT TTGTTTGCCATTTAATTTTTACGGCCGCCCACTCCTTACTCATGCCCTCC CCTGGTTTTTACATAGACAGCTCAGTGAAACGCTTTATGTGGCTGGTGGG CTCCTTGACAAGATCTGGAAGGCGGCACGCCGAAAGGAAGGGGAGGAAGG GGATTGCGCGAGGCGGCGTCATCGCAAGCATTAGATTGGGGAGAATCACT CCCGGAGGCTTGGCCCTTTCTTCGAGAGGGTGGCTGCTACAAGCCAGAAA GGAGTCATGTTTTCCTCTCCGTTATGGTATGCGTATTTTACTTGTATGGA GGTGGTTTTGATGAACCTCATTTCTATTGATTTTTTAATCCACGTGGGGC AGGATGTTGAGAAGGGTGGGATGTGGACTGCAGCGCTTGAGAAGATCTGC ATGGATGAGGGGGTGACAAATGCATGGAAAGCTCGCATGCAGAAGATATT AGCATACCGTGTAGACGTACCTGCAGATGCGGTTGAAGGATGGTGCCGGC TCCATCCTTGCATCTCTCCTCCTGCGTCTCGGAAATTCGATCCGCCCCGG CCTCCGCACTATCGGCAAGATAGCGAAAGAGCGTGCGGAGAAGGAGAAGA GGGCGAGTCGAATGTCCATCTCGAGGTTTTTACCCGTAGAGGGCACGGCC GTCGAGTACGCATGTTTACTCACGAGTCACTATGCCACCTTGGTGGCAAA TATTCTCACGATGGATCTGGCAAATGTGCGTGGAGTAGCATCTGAATTAG GTTTGCATTTAGCCACAGGTACGATACATGAGGGATGGCGGGAAAGGCGT CCCGAAGATAAAACCACCTTGGAGGATTTGATAGACCTTGAGAGCACCGT GCCGTGTGCGCCACTTCTCAAGGGGGGCCTAAAGCCGTCCTTTCAAATTA AAAATTTAGGGGATTTTGATGGAAAGATTGGAGGGAGGGTGCGAGTGTAT CTTCGACGGGGCCGGATCACTTGATCCCATCAGTTGCAAACGCTGGATTG TTGCCTTCCAGAGACGGCTTCAGAAAACAAGGGGTGCGAGCAGTTAGCTC GAAATCAATGCAGAGGATACCGCATTGCATGGTAGTTGTAGTCGAAATAT TGAGTGGGAACCTTTTGGGGTGGGCATGCGCCAAACGGAATTCGACAGCT GCGCCAAAGAGGGGGGGCGAATGGAATGCGGGTGCAATGGCGCGGGACGG AAATGGAACTGCTTATCGCCATGCCGTACAAAAGACAAGCGGTCGCGCCT GTGCTTGCTACTGGACACGACTCCTGAACTTTCAGCTGTATACTCGTCAT ACGTTGAACCACAGCTGAAGTGCGTGTATTTAATTTTGAACGATGAGGGT AAAACGCTGACGTTGGTCCGCTTCCAGCGGAGTAGTATCGAGGATGTCGC CTTCTCACACGCATGTCTGTGGGGACTGTTATGGAGTGAAGGTCCATTCC ACGGCGGATTCGGGCTCTCAATGCGGCTCTCGTGGGCAGTGTCGTCGAGA AAACCGTGGACGCACACGAGGAACTGGAGGCCGTGGAAGCTGAGGAAGCA AGATGCCGCTCCCTCCACCTATGTCGAGGTTATCATTGGTCGACTGGCCT TTTAGTAATTACAAGCTTCGAGATATCTACTGCGATGCCCGTTTAGACTG TCGGAGTCGTCAAACGCTTGCTGTAGACTTTGTCAAGAAGATGACAGGAT TGTCGCCAAAAACGGCATCATACATGATGATGAGCCTTGCGTGCGCTCGA CCGCTGCCTCTTATGCCTCGGTTGTTGGGGGTCTGCAGGTGGTGCGAGAT TTTGCGGAATCTGATCTCGACAAGACTTCATTTGGGCAAATACACGTGGC CGGCTATGCGTATGCACATGGGCACAAAATGATTCGATAAATGGAAAAGG AGAAGGCGCAGTATCTGCAATGCAGAAAATTTTGGATGATAAGCATTTAA GATTGTATGCTAATTCGAAGGAATTTGCTGGCCTTAAAAATGGCCAGTTA CATGGAGAAATGGCGAGATGATCTGTTGAAAATAGATGACGTGACGAAAA CCAATTTGAGCGAGCATTTCTTCACTAGTAAGGCGTGCGAGGACTTCGTC ATGGGTATGCGGGGAATGGTGGGGTTTGTGCGAATGTGTTGTACGGAAAA GGGTTATGTACTACCGCACATGCTTTCTTAGGACCATATAGAAGATCTGT TTGGTATTATGAAAGGGCTTCCGCGGAAAGGAACGCTGACGGCCGAGAAA AGGGAAGAGGTGTCTCGGACTACTTTTATCTAAAAAAGTTTGACGATGTT CAAATCATCGGCCGGTTTTAACGTGGCCGGACGGCCCCTGATGGACACAC ACACCGGATACACATGACGAAGTCCTCGTACGCCTTACTAGTAAAGAAAT GCTCGCTCAAATTGGTTTTCGTCACGTCATCTATTTTCAACAGATCATCT CGCCATTTCTCCATGTAACTGGCCATTTTTAAGGCCAGCAAATTCCTTCG AATTAGCATACAATCTTAAATGCTTATTATCCAAAATTTTGCGCACCTTC TTTTCTCCGAACGTGTGATATGCCGACACATCTCAGAAGAGGGTTAGATC AATCTGATTCTTCGAATTCACCCCAAGAGATCTCACACACCGCTGACTCT TATCCGAGGAAGAATGGCCAACAGCCTATCCGGAAAGCAAACCGTTCTCA A
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Coding sequence (CDS) from alignment at chr11:542086..546136-

>NO11G01640.1 ID=NO11G01640.1|Name=NO11G01640.1|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at chr11:542086..546136- (Nannochloropsis oceanica)
ATGCGGTTGAAGGATGGTGCCGGCTCCATCCTTGCATCTCTCCTCCTGCG
TCTCGGAAATTCGATCCGCCCCGGCCTCCGCACTATCGGCAAGATAGCGA
AAGAGCGTGCGGAGAAGGAGAAGAGGGCGAGTCGAATGTCCATCTCGAGG
TTTTTACCCGTAGAGGGCACGGCCGTCGAGTACGCATGTTTACTCACGAG
TCACTATGCCACCTTGGTGGCAAATATTCTCACGATGGATCTGGCAAATG
TGCGTGGAGTAGCATCTGAATTAGGTTTGCATTTAGCCACAGGTACGATA
CATGAGGGATGGCGGGAAAGGCGTCCCGAAGATAAAACCACCTTGGAGGA
TTTGATAGACCTTGAGAGCACCGTGCCGTGTGCGCCACTTCTCAAGGGGG
GCCTAAAGCCGTCCTTTCAAATTAAAAATTTAGGGGATTTTGATGGAAAG
ATTGGAGGGAGGGTGCGAGTGTATCTTCGACGGGGCCGGATCACTTGA
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Synonyms
Publications