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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr11 | genome | chr11:539280..542085 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01630.1 vs.
Match: EWM25031.1 (acyl dehydratase [Nannochloropsis gaditana]) HSP 1 Score: 552.7 bits (1423), Expect = 8.700e-154 Identity = 281/384 (73.18%), Postives = 321/384 (83.59%), Query Frame = 0
Query: 1 MAPNPLTAMLERVRAVLPAHLIPIIATVIVGLLTLVLFARVIEDHMSKGGAETFYPTNAHTRVLSYKLFTGGLCKGKKWQKEVQKQGFQLCDRVLSAQLPLVPSKQHVADMVRVCELPTSDPSSPPMHLPFIYPAVLMVYPNCLLFTKPEYPFPAVGSVHVSNRTTIYRPLSVEEEYAALIKVDPVVTPAKKGTEVTFISTLHDKVGALVWKNASTFLVLHKRMAIMTPSVKPARELQPPTSTPPVLDTIWTLPPNMGQRYAAVAKDHNPIHTSNLAARAFGFPGVIMHGMYFIVRAAAECQTVVARRN--KTLTYPVEVTAKFVRPVVLPQKVGFKVIPTTDPGEGGVVGGAGGGKGAAPYFLRYEVLNKSSKIAVEGVFSCR 383
MAP+PL AML RV+A LP + +P++ATV+VGLLTLVL A V+EDHMSKGG +TFYP+ A+TRVLSYKL TG L KG KW+K+VQK+ F LCDRVLSAQL L+P +HVAD++RVCELP+S PS P +HLPF+YPAVLMVYPNCLLFTKPEYPFPA+GSVHV NRT I+RPLSVEEEYAAL+KVDPVV PAKKGTEVTFISTL DK GA+VW NASTFLVLHKR+ MTP+VKP RE+QPPT+T PV++T W+LP NMG++YAAVAKD+NPIHTS LAA+AFGFPGVIMHGMYFIVRAAAECQ VV + + L YPVEVTAKFVRPVVLP KVGFKV P G+ GG GAAP LRYEVLNK+ KIAVEG F R
Sbjct: 1 MAPSPLGAMLARVQAALPGNFVPVLATVVVGLLTLVLIAHVVEDHMSKGGTDTFYPSVANTRVLSYKLLTGALSKGSKWKKDVQKENFHLCDRVLSAQLSLLPHTEHVADIIRVCELPSSAPS-PRVHLPFVYPAVLMVYPNCLLFTKPEYPFPAIGSVHVFNRTVIHRPLSVEEEYAALLKVDPVVKPAKKGTEVTFISTLRDKTGAVVWSNASTFLVLHKRLQTMTPTVKPDREVQPPTTTAPVMNTTWSLPANMGRQYAAVAKDNNPIHTSALAAKAFGFPGVIMHGMYFIVRAAAECQAVVEKSDGLGKLGYPVEVTAKFVRPVVLPHKVGFKVTPIV------ATEGSKGGSGAAPRALRYEVLNKAGKIAVEGEFFYR 377
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01630.1 ID=NO11G01630.1|Name=NO11G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2615bp
TAGTCAGCGAGATGAAATAAAAGACACTCGTCACAATCTCTACATAGTGG
ACATGAATATAAGGACAAAACAAGCGATATCTGTGTGTTCATTCTCCTCT
ACATAATCGGGCCGAAGGGGGTGAAGTAGTTGTTTCCACATTTAAATATC
CAAATCAACAGGGAGATGCTGAATTCAGAAGACAAAGACACTCTAGGGAT
CGCAGGCTTGGGACCGAGGCAATGAAACATAAGCCACTTTAACCTCTACT
TTCTTTCTCTTCTATAAGCCAAATTGTTTGATAATTGGTCAGTTTCTTTG
TGGCGCCACCCATCCCTCACACAGAAAAGGATAACCTTACATGACAACAT
GTCGGAGGAACTTGTCCCACTGACCTTTGTTGTTTTGTTTTAGACAGTGA
GGAACGGACCGACATGTGCTTTTTTCACACCAGAAGAGATGGTGTATCAA
TACAAATCGCACACCATCACACGGAGAACATGTAGATTCGCTTGTTCACT
GCCCCGCTATGATCGGTGGGCAAGCTCTGACGGTATGTTTTGACTTGAAT
CGCCGGGACAGTAAGTACTTGTTGATGAAGGAAGCTTCTTCCATCTCCTT
CCTACCGGCGACAGCATCCCCGCCACGTATGTTCATATGTTGTAGAGTCA
TCTCTTATCCCTTGAGTAAGCTCTCTTCGTCAGCTTCTTGGCGGGCGTCG
CAGCGGATGCTGCCTGGAAACTTCATGGCCCGACCTCCAACTTCCCATCA
GAAATAGGAATCAAGAATCAAGAATCCCACGCCTAGTATAATAAACTGGC
AGGAGATCTCACAATCATCCAATGTCACGGTTGCATAACCAATAATAATC
CTGGGAAATAGGCATGTTCCTCAGTGGCCGATCGTCTGTTTCTTAAACTC
CCCACCGCAATTTACACCCCTACTTCTATCACCACAGGCACCATGGCCCC
TAATCCGCTCACCGCCATGCTCGAGAGGGTCCGAGCCGTCCTCCCCGCCC
ACCTCATCCCCATCATTGCCACTGTAATTGTGGGGCTTTTGACACTCGTC
CTGTTTGCGCGCGTCATCGAAGACCACATGAGTAAGGGCGGCGCCGAGAC
CTTCTACCCCACCAATGCCCATACCCGAGTCCTTAGCTACAAGCTATTCA
CCGGCGGTTTGTGCAAAGGAAAGAAATGGCAAAAGGAGGTGCAAAAACAA
GGTTTTCAACTCTGTGATCGTGTCTTGTCCGCACAACTACCTCTCGTGCC
CAGTAAGCAGCACGTTGCTGACATGGTTCGTGTCTGCGAGCTCCCAACCT
CCGACCCCTCCTCCCCTCCCATGCACCTCCCCTTCATCTACCCGGCCGTG
TTGATGGTCTATCCCAACTGCCTACTTTTCACCAAGCCCGAGTACCCCTT
CCCCGCGGTGGGCTCTGTGCATGTGTCGAACCGAACGACGATTTACCGCC
CGTTGAGCGTGGAGGAAGAATACGCGGCCTTAATCAAGGTTGACCCGGTG
GTGACGCCTGCGAAGAAGGGGACAGAAGTCACTTTCATTTCCACGTTGCA
CGATAAGGTGGGGGCGTTAGTCTGGAAAAATGCGAGTACGTTTTTGGTAC
TGCATAAGCGGATGGCGATTATGACTCCTAGCGTCAAACCCGCGCGCGAG
CTTCAACCCCCCACCTCCACACCTCCCGTCCTCGATACAATCTGGACCCT
CCCCCCCAATATGGGCCAACGTTACGCCGCCGTTGCCAAAGACCACAACC
CCATTCACACTTCCAACCTGGCGGCGAGGGCCTTTGGTTTTCCGGGGGTG
ATCATGCATGGCATGTACTTCATCGTTCGTGCTGCTGCTGAGTGCCAGAC
TGTGGTCGCAAGAAGGAATAAGACTTTAACTTATCCCGTGGAAGTAACGG
CAAAGTTTGTGCGGCCAGTCGTGTTGCCCCAAAAGGTTGGGTTCAAGGTC
ATCCCGACCACGGACCCCGGGGAAGGAGGAGTGGTGGGAGGCGCGGGAGG
AGGGAAGGGGGCAGCGCCGTATTTTTTGCGGTATGAAGTTTTGAATAAGT
CGAGCAAAATTGCAGTGGAAGGAGTCTTTTCATGTCGAGTGCAGGGATAG
AGAATTATGTTTTAGTGTGAGGGGAGAAGGGGAAAAGTAATTGTAGCAGC
ACTAGCAGTGGAGGCTAGTGAGCGATATTATCAGTAGATAGTGGCAGAAG
AAATATCAGCAGCGGCAAATGTATCCAGGAAACGAGGCTTTATCTGAGTT
ATGTAATATGTTCAGCGAAACATGTGGTAAAAATCAGGAGAGAGGGAAGT
CTGCGACCTGTGACAATTAAGCAGTGTCGGTAGACAAGTGGTAGTGATCG
GCACGCAGAGATTTATACGACCGTGTTGTTGAGGGGAAATGAGGCAGGCG
AGGTTGAATAGATAAGTGGTGCAGGATGTTGTTGGCTGATGCGGGCTTGG
TTTCTTTGTGAGCGAAACGCCTGGGTTTGAGAGTTCATAAATACTTGCAA
CGTGTGGTAACAAGAAGGTTACATCAAAGTGAGGGATTGCGTTTTAAGGA
GATCAAGAGGAAATCGTCCACAAGATGAAAGAGATGAACAAATAGAATGT
GTTATTCAATTTGAG back to topprotein sequence of NO11G01630.1 >NO11G01630.1-protein ID=NO11G01630.1-protein|Name=NO11G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MAPNPLTAMLERVRAVLPAHLIPIIATVIVGLLTLVLFARVIEDHMSKGG
AETFYPTNAHTRVLSYKLFTGGLCKGKKWQKEVQKQGFQLCDRVLSAQLP
LVPSKQHVADMVRVCELPTSDPSSPPMHLPFIYPAVLMVYPNCLLFTKPE
YPFPAVGSVHVSNRTTIYRPLSVEEEYAALIKVDPVVTPAKKGTEVTFIS
TLHDKVGALVWKNASTFLVLHKRMAIMTPSVKPARELQPPTSTPPVLDTI
WTLPPNMGQRYAAVAKDHNPIHTSNLAARAFGFPGVIMHGMYFIVRAAAE
CQTVVARRNKTLTYPVEVTAKFVRPVVLPQKVGFKVIPTTDPGEGGVVGG
AGGGKGAAPYFLRYEVLNKSSKIAVEGVFSCRVQG* back to topmRNA from alignment at chr11:539280..542085+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01630.1 ID=NO11G01630.1|Name=NO11G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2806bp|location=Sequence derived from alignment at chr11:539280..542085+ (Nannochloropsis oceanica)
TAGTCAGCGAGATGAAATAAAAGACACTCGTCACAATCTCTACATAGTGG
ACATGAATATAAGGACAAAACAAGCGATATCTGTGTGTTCATTCTCCTCT
ACATAATCGGGCCGAAGGGGGTGAAGTAGTTGTTTCCACATTTAAATATC
CAAATCAACAGGGAGATGCTGAATTCAGAAGACAAAGACACTCTAGGGAT
CGCAGGCTTGGGACCGAGGCAATGAAACATAAGCCACTTTAACCTCTACT
TTCTTTCTCTTCTATAAGCCAAATTGTTTGATAATTGGTCAGTTTCTTTG
TGGCGCCACCCATCCCTCACACAGAAAAGGATAACCTTACATGACAACAT
GTCGGAGGAACTTGTCCCACTGACCTTTGTTGTTTTGTTTTAGACAGTGA
GGAACGGACCGACATGTGCTTTTTTCACACCAGAAGAGATGGTGTATCAA
TACAAATCGCACACCATCACACGGAGAACATGTAGATTCGCTTGTTCACT
GCCCCGCTATGATCGGTGGGCAAGCTCTGACGGTATGTTTTGACTTGAAT
CGCCGGGACAGTAAGTACTTGTTGATGAAGGAAGCTTCTTCCATCTCCTT
CCTACCGGCGACAGCATCCCCGCCACGTATGTTCATATGTTGTAGAGTCA
TCTCTTATCCCTTGAGTAAGCTCTCTTCGTCAGCTTCTTGGCGGGCGTCG
CAGCGGATGCTGCCTGGAAACTTCATGGCCCGACCTCCAACTTCCCATCA
GAAATAGGAATCAAGAATCAAGAATCCCACGCCTAGTATAATAAACTGGC
AGGAGATCTCACAATCATCCAATGTCACGGTTGCATAACCAATAATAATC
CTGGGAAATAGGCATGTTCCTCAGTGGCCGATCGTCTGTTTCTTAAACTC
CCCACCGCAATTTACACCCCTACTTCTATCACCACAGGCACCATGGCCCC
TAATCCGCTCACCGCCATGCTCGAGAGGGTCCGAGCCGTCCTCCCCGCCC
ACCTCATCCCCATCATTGCCACTGTAATTGTGGGGCTTTTGACACTCGTC
CTGTTTGCGCGCGTCATCGAAGACCACATGAGTAAGGGCGGCGCCGAGAC
CTTCTACCCCACCAATGCCCATACCCGAGTCCTTAGCTACAAGCTATTCA
CCGGCGGTTTGTGCAAAGGAAAGAAATGGCAAAAGGAGGTGCAAAAACAA
GGTTTTCAACTCTGTGATCGTGTCTTGTCCGCACAACTACCTCTCGTGCC
CAGTAAGCAGCACGTTGCTGACATGGTTCGTGTCTGCGAGCTCCCAACCT
CCGACCCCTCCTCCCCTCCCATGCACCTCCCCTTCATCTACCCGGCCGTG
TTGATGGTCTATCCCAACTGCCTACTTTTCACCAAGCCCGAGTACCCCTT
CCCCGCGGTGGGCTCTGTGCATGTGTCGAACCGAACGACGATTTACCGCC
CGTTGAGCGTGGAGGAAGAATACGCGGCCTTAATCAAGGTTGACCCGGTG
GTGACGCCTGCGAAGAAGGGGACAGAAGTCACTTTCATTTCCACGTTGCA
CGATAAGGTGGGGGCGTTAGTCTGGAAAAATGCGAGTACGTTTTTGGTAC
TGCATAAGCGGATGGCGATTATGACTCCTAGGTAAATACATTAGGTTGGA
AGTCTTAGGAAGGTGTGAGAGGGAGGGAAAGAGAACAGGTTACAGGGCAG
GATCATGAGCTATATCGAATTTTAAAATGGTACATATTTCAAAGCGTATG
CTTATGTGTATGTGTCTCAACGCTTTCCTGCATCATCTCACCCTTTCTCC
CTCCCTGCCTCCCTCCGCACAGCGTCAAACCCGCGCGCGAGCTTCAACCC
CCCACCTCCACACCTCCCGTCCTCGATACAATCTGGACCCTCCCCCCCAA
TATGGGCCAACGTTACGCCGCCGTTGCCAAAGACCACAACCCCATTCACA
CTTCCAACCTGGCGGCGAGGGCCTTTGGTTTTCCGGGGGTGATCATGCAT
GGCATGTACTTCATCGTTCGTGCTGCTGCTGAGTGCCAGACTGTGGTCGC
AAGAAGGAATAAGACTTTAACTTATCCCGTGGAAGTAACGGCAAAGTTTG
TGCGGCCAGTCGTGTTGCCCCAAAAGGTTGGGTTCAAGGTCATCCCGACC
ACGGACCCCGGGGAAGGAGGAGTGGTGGGAGGCGCGGGAGGAGGGAAGGG
GGCAGCGCCGTATTTTTTGCGGTATGAAGTTTTGAATAAGTCGAGCAAAA
TTGCAGTGGAAGGAGTCTTTTCATGTCGAGTGCAGGGATAGAGAATTATG
TTTTAGTGTGAGGGGAGAAGGGGAAAAGTAATTGTAGCAGCACTAGCAGT
GGAGGCTAGTGAGCGATATTATCAGTAGATAGTGGCAGAAGAAATATCAG
CAGCGGCAAATGTATCCAGGAAACGAGGCTTTATCTGAGTTATGTAATAT
GTTCAGCGAAACATGTGGTAAAAATCAGGAGAGAGGGAAGTCTGCGACCT
GTGACAATTAAGCAGTGTCGGTAGACAAGTGGTAGTGATCGGCACGCAGA
GATTTATACGACCGTGTTGTTGAGGGGAAATGAGGCAGGCGAGGTTGAAT
AGATAAGTGGTGCAGGATGTTGTTGGCTGATGCGGGCTTGGTTTCTTTGT
GAGCGAAACGCCTGGGTTTGAGAGTTCATAAATACTTGCAACGTGTGGTA
ACAAGAAGGTTACATCAAAGTGAGGGATTGCGTTTTAAGGAGATCAAGAG
GAAATCGTCCACAAGATGAAAGAGATGAACAAATAGAATGTGTTATTCAA
TTTGAG back to topCoding sequence (CDS) from alignment at chr11:539280..542085+ >NO11G01630.1 ID=NO11G01630.1|Name=NO11G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr11:539280..542085+ (Nannochloropsis oceanica)
ATGGCCCCTAATCCGCTCACCGCCATGCTCGAGAGGGTCCGAGCCGTCCT
CCCCGCCCACCTCATCCCCATCATTGCCACTGTAATTGTGGGGCTTTTGA
CACTCGTCCTGTTTGCGCGCGTCATCGAAGACCACATGAGTAAGGGCGGC
GCCGAGACCTTCTACCCCACCAATGCCCATACCCGAGTCCTTAGCTACAA
GCTATTCACCGGCGGTTTGTGCAAAGGAAAGAAATGGCAAAAGGAGGTGC
AAAAACAAGGTTTTCAACTCTGTGATCGTGTCTTGTCCGCACAACTACCT
CTCGTGCCCAGTAAGCAGCACGTTGCTGACATGGTTCGTGTCTGCGAGCT
CCCAACCTCCGACCCCTCCTCCCCTCCCATGCACCTCCCCTTCATCTACC
CGGCCGTGTTGATGGTCTATCCCAACTGCCTACTTTTCACCAAGCCCGAG
TACCCCTTCCCCGCGGTGGGCTCTGTGCATGTGTCGAACCGAACGACGAT
TTACCGCCCGTTGAGCGTGGAGGAAGAATACGCGGCCTTAATCAAGGTTG
ACCCGGTGGTGACGCCTGCGAAGAAGGGGACAGAAGTCACTTTCATTTCC
ACGTTGCACGATAAGGTGGGGGCGTTAGTCTGGAAAAATGCGAGTACGTT
TTTGGTACTGCATAAGCGGATGGCGATTATGACTCCTAGCGTCAAACCCG
CGCGCGAGCTTCAACCCCCCACCTCCACACCTCCCGTCCTCGATACAATC
TGGACCCTCCCCCCCAATATGGGCCAACGTTACGCCGCCGTTGCCAAAGA
CCACAACCCCATTCACACTTCCAACCTGGCGGCGAGGGCCTTTGGTTTTC
CGGGGGTGATCATGCATGGCATGTACTTCATCGTTCGTGCTGCTGCTGAG
TGCCAGACTGTGGTCGCAAGAAGGAATAAGACTTTAACTTATCCCGTGGA
AGTAACGGCAAAGTTTGTGCGGCCAGTCGTGTTGCCCCAAAAGGTTGGGT
TCAAGGTCATCCCGACCACGGACCCCGGGGAAGGAGGAGTGGTGGGAGGC
GCGGGAGGAGGGAAGGGGGCAGCGCCGTATTTTTTGCGGTATGAAGTTTT
GAATAAGTCGAGCAAAATTGCAGTGGAAGGAGTCTTTTCATGTCGAGTGC
AGGGATAG back to top
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