NO11G01620.1, NO11G01620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01620.1
Unique NameNO11G01620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length720
Alignment locationchr11:537104..538275 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:537104..538275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01620.1 vs.
Match: EWM29876.1 (ethylmalonic encephalopathy 1 [Nannochloropsis gaditana])

HSP 1 Score: 65.5 bits (158), Expect = 2.600e-7
Identity = 49/160 (30.63%), Postives = 78/160 (48.75%), Query Frame = 0 
Query:   81 AVTADQPASGIHVGKTIGSKKEALAIIRKHKNLLYLATDANGDIAYKNDEDATKRGFQGLKELGDAAGIEMKHYPLKV-DSLTASDADNLVEILTGLPRPTYIMCKSGARASALKALYLARLADLKEEKDLKKNIGTDLERLWLKIPAAKDWVLSNSAVR 240
            A T    A+ I     +G + E  A+  K+K++LYLATD   D      +     GF  L+      G+  +H P+ V D L+   A + ++ L  LP P  ++C SG RASA++   L +  +    KD       +++  ++K P+ KDWVL+  A R
Sbjct:   72 ASTMTVTAADITTAGKLG-EAETSALSDKYKSVLYLATDKGAD------KGIEPNGFASLR------GLTTRHLPVDVKDGLSLQLATDALQALDELPAPALVVCSSGGRASAVQC--LRKATEEGWTKDQTLAYALEMKLPFVKNPSLKDWVLATVAAR 216
The following BLAST results are available for this feature:
BLAST of NO11G01620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29876.12.600e-730.63ethylmalonic encephalopathy 1 [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01620NO11G01620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01620.1NO11G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01620.1.cds1NO11G01620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01620.1.cds2NO11G01620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01620.1.cds3NO11G01620.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO11G01620.1.cds4NO11G01620.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01620.1 ID=NO11G01620.1|Name=NO11G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
ATGTCTCACATGTGGGCCTTCCTTCTGGCGCTGGGTAGCGTCGTCCTGAG
CACAAATGCCTTCGTGACATCTTCGTATCAGACGCCAACGAGGAGCTTGC
ACACGGCGGAGAGCAAGAACACAAAAACGGTGACGACGATGCAAGCAGAG
TCCATGTCACGTGCGGATGCCTTATTGACTGTAGGTACGGCCTTCTTCGG
TGCGGCAGCCGTCGTGACGGGGACCTCTGGCCCGGCGCATGCCGTCACCG
CAGACCAGCCTGCCAGCGGCATCCATGTTGGAAAAACTATTGGGAGCAAA
AAAGAGGCACTCGCCATCATCCGAAAACACAAAAACCTCTTATATCTGGC
TACAGATGCCAATGGCGACATCGCCTATAAGAACGACGAGGATGCGACCA
AGAGAGGTTTTCAAGGCTTGAAGGAGCTGGGCGATGCGGCAGGAATAGAG
ATGAAGCACTACCCTCTCAAGGTGGACTCTCTAACGGCATCCGATGCGGA
CAACTTGGTGGAGATCCTGACTGGGTTACCGCGACCCACGTACATCATGT
GCAAGTCGGGAGCCCGTGCCAGTGCCTTGAAGGCCCTCTACCTCGCCCGT
TTGGCGGATTTGAAGGAGGAAAAGGATCTGAAAAAAAACATTGGAACCGA
CTTGGAACGCCTCTGGCTCAAAATTCCGGCTGCTAAGGACTGGGTTCTTT
CCAATAGCGCAGTGCGATGA
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protein sequence of NO11G01620.1

>NO11G01620.1-protein ID=NO11G01620.1-protein|Name=NO11G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MSHMWAFLLALGSVVLSTNAFVTSSYQTPTRSLHTAESKNTKTVTTMQAE
SMSRADALLTVGTAFFGAAAVVTGTSGPAHAVTADQPASGIHVGKTIGSK
KEALAIIRKHKNLLYLATDANGDIAYKNDEDATKRGFQGLKELGDAAGIE
MKHYPLKVDSLTASDADNLVEILTGLPRPTYIMCKSGARASALKALYLAR
LADLKEEKDLKKNIGTDLERLWLKIPAAKDWVLSNSAVR*
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mRNA from alignment at chr11:537104..538275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01620.1 ID=NO11G01620.1|Name=NO11G01620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp|location=Sequence derived from alignment at chr11:537104..538275- (Nannochloropsis oceanica)
ATGTCTCACATGTGGGCCTTCCTTCTGGCGCTGGGTAGCGTCGTCCTGAG
CACAAATGCCTTCGTGACATCTTCGTATCAGGTAAGCCGCGTCCTCTTGT
GATAGTCGGTCGCACAAGACATTTATCCTCACCCTATGGTCCATGCCCCC
ATATTATATATGTACAGACGCCAACGAGGAGCTTGCACACGGCGGAGAGC
AAGAACACAAAAACGGTGACGACGATGCAAGCAGAGTCCATGTCACGTGC
GGATGCCTTATTGACTGTAGGTACGGCCTTCTTCGGTGCGGCAGCCGTCG
TGACGGGGACCTCTGGCCCGGCGCATGCCGTCACCGCAGACCAGCCTGCC
AGCGGCATCCATGTTGGAAAAACTATTGGGAGCAAAAAAGAGGCACTCGC
CATCATCCGAAAACACAAAAACCTCTTATATCTGGCTACAGGTGAGTAAA
TGGCATTTCAGATGTGAGTGTGCGGTACACGTCTGGTGACTGCCTCGCAT
CATCCATGACCTGAACCCACATTTGTAGTGCCCTTCCCTTCTTTCGTGCA
CCCCTTTTCTCTAAGCAAATGTGTTCACTGTCGCGAAGCCTTCACTCTCG
TTCATGCAATTATCCCTCCAATCTTTGATTTTGCCTTTGATGCCGCCACC
CCCTATTTTGCCACTTTCAATTCATCGGTCCAATCGCATGTCCCCCCCCC
CACTCCCGAATGACTAGATGCCAATGGCGACATCGCCTATAAGAACGACG
AGGATGCGACCAAGAGAGGTTTTCAAGGCTTGAAGGAGCTGGGCGATGCG
GCAGGAATAGAGATGAAGCACTACCCTCTCAAGGTGGACTCTCTAACGGC
ATCCGATGCGGACAACTTGGTGGAGATCCTGACTGGGTTACCGCGACCCA
CGTACATCATGTGCAAGTAAGTGAAGCGTAGAAAGAAAGGGGTGGAATCG
ATTGTGGGATCTTCCATGTAATTATCCGTCTTATGTGCCCGCGATCTCTG
GTACAGGTCGGGAGCCCGTGCCAGTGCCTTGAAGGCCCTCTACCTCGCCC
GTTTGGCGGATTTGAAGGAGGAAAAGGATCTGAAAAAAAACATTGGAACC
GACTTGGAACGCCTCTGGCTCAAAATTCCGGCTGCTAAGGACTGGGTTCT
TTCCAATAGCGCAGTGCGATGA
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Coding sequence (CDS) from alignment at chr11:537104..538275-

>NO11G01620.1 ID=NO11G01620.1|Name=NO11G01620.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr11:537104..538275- (Nannochloropsis oceanica)
ATGTCTCACATGTGGGCCTTCCTTCTGGCGCTGGGTAGCGTCGTCCTGAG
CACAAATGCCTTCGTGACATCTTCGTATCAGACGCCAACGAGGAGCTTGC
ACACGGCGGAGAGCAAGAACACAAAAACGGTGACGACGATGCAAGCAGAG
TCCATGTCACGTGCGGATGCCTTATTGACTGTAGGTACGGCCTTCTTCGG
TGCGGCAGCCGTCGTGACGGGGACCTCTGGCCCGGCGCATGCCGTCACCG
CAGACCAGCCTGCCAGCGGCATCCATGTTGGAAAAACTATTGGGAGCAAA
AAAGAGGCACTCGCCATCATCCGAAAACACAAAAACCTCTTATATCTGGC
TACAGATGCCAATGGCGACATCGCCTATAAGAACGACGAGGATGCGACCA
AGAGAGGTTTTCAAGGCTTGAAGGAGCTGGGCGATGCGGCAGGAATAGAG
ATGAAGCACTACCCTCTCAAGGTGGACTCTCTAACGGCATCCGATGCGGA
CAACTTGGTGGAGATCCTGACTGGGTTACCGCGACCCACGTACATCATGT
GCAAGTCGGGAGCCCGTGCCAGTGCCTTGAAGGCCCTCTACCTCGCCCGT
TTGGCGGATTTGAAGGAGGAAAAGGATCTGAAAAAAAACATTGGAACCGA
CTTGGAACGCCTCTGGCTCAAAATTCCGGCTGCTAAGGACTGGGTTCTTT
CCAATAGCGCAGTGCGATGA
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Synonyms
Publications