NO11G01580.1, NO11G01580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01580.1
Unique NameNO11G01580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1260
Alignment locationchr11:523685..524944 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:523685..524944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO11G01580.1 vs.
Match: EWM25023.1 (metaxin 1 [Nannochloropsis gaditana])

HSP 1 Score: 584.3 bits (1505), Expect = 2.900e-163
Identity = 311/441 (70.52%), Postives = 354/441 (80.27%), Query Frame = 0
Query:    1 MFSSADFFESDFSKNPLGAHTSSLCPGHAVDPNPIKAHAEGKQPLILLQFRPAFALQLYLRFVRAPYVVRNLEYPFLETAGRLPVLIDGQFIIPEDDALAYLREHYPSSLDLDSKLSGAKRAQVSALHALVSEKLAPALGASRYRDERNFVQNVRDVILRATRFPLGPTWASAERRRGMAEQRWRGLVEGGVGLGELLARARVVYRELDNWLGASTGDFFFGREPTSFDACLFGHLVEALADVNVLVIVSTFGNLMRFFRRIAEEFFEIGSATVASSAEQ------------QQQQGFVVASNVKEYYKRADYVNSRNPFNQVKAAKLCAEAPLVPEPMLHKFLEEG---------EGPKGGVGGVGKKQAGTTAAGPE----GGKKAEELEEERARHKENVIWLTVVGGVVGFFLLFQGIMALATGEIEIVTEGEEEEVE 417
            MFSS DFF +DF+KNPLGA+  SLC  HAV+P PIKAHAE   P +LLQFRPAFALQLYLRFVRAPYVVRNLEYP LET G+LPVL+DGQF++PE+DAL YLREHYP+ LDLD+KLSGA+RAQV ALHALV EKLAPA+GASRYRDERNFVQNVR VILRATRFPLGP  ++AERRRGM EQRWRGL +GG+G+GE+L RA+ VYRELDN LGASTGDFFFGREPTSFDACLFGHL EALADVNVLV+VSTF NLMRFF RIAE+FF +G+   AS+A              ++ QGF +AS++KE Y+ ADY+N+RNPFNQV+AAKLCAEAPLVPEPM+ KFLE G          G +G  GG         A+G      G KKAEELEEER R +ENV+WLTVVGGVV FFLLFQG++ALATGEIEIV   EEEEV+
Sbjct:   32 MFSS-DFFGTDFTKNPLGANKPSLCHEHAVEPTPIKAHAERSYPFVLLQFRPAFALQLYLRFVRAPYVVRNLEYPVLETVGQLPVLMDGQFLLPEEDALGYLREHYPA-LDLDAKLSGARRAQVLALHALVREKLAPAVGASRYRDERNFVQNVRAVILRATRFPLGPAISTAERRRGMQEQRWRGLADGGMGVGEVLTRAQCVYRELDNLLGASTGDFFFGREPTSFDACLFGHLAEALADVNVLVLVSTFDNLMRFFGRIAEDFFNVGAQAAASAASSSTSLSASLGGPVREPQGFSIASDLKECYRHADYMNNRNPFNQVEAAKLCAEAPLVPEPMVQKFLEGGGLQGSGDASAGGRGEAGGAPGSSGPADASGSTGTVGGRKKAEELEEERERRRENVLWLTVVGGVVSFFLLFQGVLALATGEIEIV---EEEEVD 467          
The following BLAST results are available for this feature:
BLAST of NO11G01580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25023.12.900e-16370.52metaxin 1 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01580NO11G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01580.1NO11G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01580.1.cds1NO11G01580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01580.1 ID=NO11G01580.1|Name=NO11G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp
ATGTTCTCCTCCGCTGACTTCTTCGAAAGCGACTTCTCCAAGAACCCCCT
AGGCGCACATACCTCCTCCCTTTGCCCTGGACACGCTGTCGACCCCAACC
CCATCAAAGCCCACGCCGAGGGAAAACAACCGCTCATCCTCCTCCAATTT
CGCCCAGCATTTGCTCTGCAACTCTACCTGCGTTTCGTTCGCGCCCCCTA
CGTGGTGCGAAATCTCGAATACCCATTCCTCGAGACGGCCGGTCGCCTCC
CCGTATTGATAGATGGGCAATTTATTATACCTGAAGACGATGCGTTGGCA
TATCTTCGCGAGCATTACCCCTCCAGCCTCGACCTAGACAGCAAACTCTC
TGGCGCAAAGCGAGCACAAGTCTCTGCTTTGCATGCCTTAGTCTCCGAAA
AGTTGGCCCCTGCGCTAGGTGCCTCCCGGTATCGGGACGAGAGGAATTTT
GTCCAGAATGTTCGCGATGTCATTTTGAGGGCCACCCGCTTTCCGCTTGG
TCCGACGTGGGCGAGTGCTGAGCGGCGGCGTGGTATGGCGGAGCAACGCT
GGAGGGGGCTGGTGGAGGGAGGGGTGGGTCTGGGGGAGCTGTTGGCGAGA
GCGCGTGTCGTATATCGTGAGTTGGATAACTGGCTGGGGGCAAGTACGGG
GGATTTCTTCTTTGGACGAGAACCTACGAGTTTTGATGCGTGTTTATTCG
GGCACCTAGTAGAAGCGTTGGCCGATGTGAATGTTTTGGTGATAGTGAGT
ACGTTTGGAAATCTCATGCGTTTTTTCAGACGTATTGCCGAGGAGTTTTT
TGAGATTGGAAGTGCAACAGTAGCCTCTTCTGCAGAGCAGCAGCAACAGC
AAGGTTTTGTGGTGGCGTCCAATGTAAAGGAGTATTACAAACGCGCCGAC
TACGTCAACAGCCGCAACCCATTCAATCAAGTTAAAGCCGCTAAATTGTG
CGCTGAGGCCCCCTTAGTCCCCGAGCCAATGCTTCACAAATTCTTAGAAG
AAGGTGAAGGGCCAAAAGGCGGCGTCGGTGGGGTTGGAAAGAAACAAGCA
GGCACAACGGCTGCTGGCCCGGAAGGGGGGAAGAAGGCGGAGGAATTGGA
AGAGGAACGGGCGAGGCACAAGGAGAATGTGATTTGGTTGACGGTGGTTG
GTGGGGTTGTCGGATTCTTTCTCTTGTTTCAAGGTATTATGGCCTTGGCG
ACGGGAGAGATTGAGATTGTGACGGAGGGGGAGGAAGAAGAGGTGGAGGA
AGGGGGCTAG
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protein sequence of NO11G01580.1

>NO11G01580.1-protein ID=NO11G01580.1-protein|Name=NO11G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=420bp
MFSSADFFESDFSKNPLGAHTSSLCPGHAVDPNPIKAHAEGKQPLILLQF
RPAFALQLYLRFVRAPYVVRNLEYPFLETAGRLPVLIDGQFIIPEDDALA
YLREHYPSSLDLDSKLSGAKRAQVSALHALVSEKLAPALGASRYRDERNF
VQNVRDVILRATRFPLGPTWASAERRRGMAEQRWRGLVEGGVGLGELLAR
ARVVYRELDNWLGASTGDFFFGREPTSFDACLFGHLVEALADVNVLVIVS
TFGNLMRFFRRIAEEFFEIGSATVASSAEQQQQQGFVVASNVKEYYKRAD
YVNSRNPFNQVKAAKLCAEAPLVPEPMLHKFLEEGEGPKGGVGGVGKKQA
GTTAAGPEGGKKAEELEEERARHKENVIWLTVVGGVVGFFLLFQGIMALA
TGEIEIVTEGEEEEVEEGG*
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mRNA from alignment at chr11:523685..524944+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01580.1 ID=NO11G01580.1|Name=NO11G01580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp|location=Sequence derived from alignment at chr11:523685..524944+ (Nannochloropsis oceanica)
ATGTTCTCCTCCGCTGACTTCTTCGAAAGCGACTTCTCCAAGAACCCCCT AGGCGCACATACCTCCTCCCTTTGCCCTGGACACGCTGTCGACCCCAACC CCATCAAAGCCCACGCCGAGGGAAAACAACCGCTCATCCTCCTCCAATTT CGCCCAGCATTTGCTCTGCAACTCTACCTGCGTTTCGTTCGCGCCCCCTA CGTGGTGCGAAATCTCGAATACCCATTCCTCGAGACGGCCGGTCGCCTCC CCGTATTGATAGATGGGCAATTTATTATACCTGAAGACGATGCGTTGGCA TATCTTCGCGAGCATTACCCCTCCAGCCTCGACCTAGACAGCAAACTCTC TGGCGCAAAGCGAGCACAAGTCTCTGCTTTGCATGCCTTAGTCTCCGAAA AGTTGGCCCCTGCGCTAGGTGCCTCCCGGTATCGGGACGAGAGGAATTTT GTCCAGAATGTTCGCGATGTCATTTTGAGGGCCACCCGCTTTCCGCTTGG TCCGACGTGGGCGAGTGCTGAGCGGCGGCGTGGTATGGCGGAGCAACGCT GGAGGGGGCTGGTGGAGGGAGGGGTGGGTCTGGGGGAGCTGTTGGCGAGA GCGCGTGTCGTATATCGTGAGTTGGATAACTGGCTGGGGGCAAGTACGGG GGATTTCTTCTTTGGACGAGAACCTACGAGTTTTGATGCGTGTTTATTCG GGCACCTAGTAGAAGCGTTGGCCGATGTGAATGTTTTGGTGATAGTGAGT ACGTTTGGAAATCTCATGCGTTTTTTCAGACGTATTGCCGAGGAGTTTTT TGAGATTGGAAGTGCAACAGTAGCCTCTTCTGCAGAGCAGCAGCAACAGC AAGGTTTTGTGGTGGCGTCCAATGTAAAGGAGTATTACAAACGCGCCGAC TACGTCAACAGCCGCAACCCATTCAATCAAGTTAAAGCCGCTAAATTGTG CGCTGAGGCCCCCTTAGTCCCCGAGCCAATGCTTCACAAATTCTTAGAAG AAGGTGAAGGGCCAAAAGGCGGCGTCGGTGGGGTTGGAAAGAAACAAGCA GGCACAACGGCTGCTGGCCCGGAAGGGGGGAAGAAGGCGGAGGAATTGGA AGAGGAACGGGCGAGGCACAAGGAGAATGTGATTTGGTTGACGGTGGTTG GTGGGGTTGTCGGATTCTTTCTCTTGTTTCAAGGTATTATGGCCTTGGCG ACGGGAGAGATTGAGATTGTGACGGAGGGGGAGGAAGAAGAGGTGGAGGA AGGGGGCTAG
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Coding sequence (CDS) from alignment at chr11:523685..524944+

>NO11G01580.1 ID=NO11G01580.1|Name=NO11G01580.1|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at chr11:523685..524944+ (Nannochloropsis oceanica)
ATGTTCTCCTCCGCTGACTTCTTCGAAAGCGACTTCTCCAAGAACCCCCT
AGGCGCACATACCTCCTCCCTTTGCCCTGGACACGCTGTCGACCCCAACC
CCATCAAAGCCCACGCCGAGGGAAAACAACCGCTCATCCTCCTCCAATTT
CGCCCAGCATTTGCTCTGCAACTCTACCTGCGTTTCGTTCGCGCCCCCTA
CGTGGTGCGAAATCTCGAATACCCATTCCTCGAGACGGCCGGTCGCCTCC
CCGTATTGATAGATGGGCAATTTATTATACCTGAAGACGATGCGTTGGCA
TATCTTCGCGAGCATTACCCCTCCAGCCTCGACCTAGACAGCAAACTCTC
TGGCGCAAAGCGAGCACAAGTCTCTGCTTTGCATGCCTTAGTCTCCGAAA
AGTTGGCCCCTGCGCTAGGTGCCTCCCGGTATCGGGACGAGAGGAATTTT
GTCCAGAATGTTCGCGATGTCATTTTGAGGGCCACCCGCTTTCCGCTTGG
TCCGACGTGGGCGAGTGCTGAGCGGCGGCGTGGTATGGCGGAGCAACGCT
GGAGGGGGCTGGTGGAGGGAGGGGTGGGTCTGGGGGAGCTGTTGGCGAGA
GCGCGTGTCGTATATCGTGAGTTGGATAACTGGCTGGGGGCAAGTACGGG
GGATTTCTTCTTTGGACGAGAACCTACGAGTTTTGATGCGTGTTTATTCG
GGCACCTAGTAGAAGCGTTGGCCGATGTGAATGTTTTGGTGATAGTGAGT
ACGTTTGGAAATCTCATGCGTTTTTTCAGACGTATTGCCGAGGAGTTTTT
TGAGATTGGAAGTGCAACAGTAGCCTCTTCTGCAGAGCAGCAGCAACAGC
AAGGTTTTGTGGTGGCGTCCAATGTAAAGGAGTATTACAAACGCGCCGAC
TACGTCAACAGCCGCAACCCATTCAATCAAGTTAAAGCCGCTAAATTGTG
CGCTGAGGCCCCCTTAGTCCCCGAGCCAATGCTTCACAAATTCTTAGAAG
AAGGTGAAGGGCCAAAAGGCGGCGTCGGTGGGGTTGGAAAGAAACAAGCA
GGCACAACGGCTGCTGGCCCGGAAGGGGGGAAGAAGGCGGAGGAATTGGA
AGAGGAACGGGCGAGGCACAAGGAGAATGTGATTTGGTTGACGGTGGTTG
GTGGGGTTGTCGGATTCTTTCTCTTGTTTCAAGGTATTATGGCCTTGGCG
ACGGGAGAGATTGAGATTGTGACGGAGGGGGAGGAAGAAGAGGTGGAGGA
AGGGGGCTAG
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Synonyms
Publications