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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:517434..520913 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01550.1 vs.
Match: EWM25075.1 (atp-dependent clp protease atp-binding subunit [Nannochloropsis gaditana]) HSP 1 Score: 497.3 bits (1279), Expect = 6.800e-137 Identity = 289/406 (71.18%), Postives = 326/406 (80.30%), Query Frame = 0
Query: 1 MWRPSASVAAAAATARRRTRGTVLTRSTGIKCLSSSTPSSSSSPPSSNPTTT---PTDFRVLSPKEIYQGLEEHVIGQEGVKTGLSVSVHNHYLRLYSKEQARQATEAAAAAAELRKGSSSFSSSSASSVSTSVRDTDTMTIFHNGTTSNLVLSEPGDMDTASGSVHRFLREEILNAASGNPSSLNSSSSNNTPTAPSLSSSNSIPPPAARKGIKIRLNQHARRHSRPAPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVIADATCLTSAGYVGEDVESMLYKLYQAAGQDIELTERGIIYIDEIDKLSKRDSGSVRDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPKGEHIQIDTTDILFICGGAFAGLEEVIARRVSKASIGFGAELGGGREGGR 404
MWRP A+ A A +R T V S G + + ST S PP+S ++ P FRVLSP+EIY+GLE++VIGQE VKTGL+V VH HYLRLYSKEQARQA EAA AA RK + + +A R+ DTMT++HNG TS+L+LSEPGDMDTASGSVHRFLREEILNAASGNPSSL+S+S+ ++ SSS S P ARKG+ IRL+ RR +RP PSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLV+ DATCLT AGYVGEDVES+L+KLYQAAGQD+E TERGIIYIDEIDKLSKR+SGSVRDVSGEGVQQALLKMLEGNVVNVPKAGGRKNP+GEH+QIDTTDILFICGGAFAGLE VIARRVS+ASIGFGA L GG+ GGR
Sbjct: 1 MWRPYAA-AVARRCVKRPTWSAVCHGSPGGRTQNLST----SHPPTSTLSSAAVPPKAFRVLSPREIYEGLEKYVIGQEDVKTGLAVGVHAHYLRLYSKEQARQAAEAAEAANGQRKRKHAAPALAA-------REGDTMTVYHNGKTSSLILSEPGDMDTASGSVHRFLREEILNAASGNPSSLSSTSNTSSGNGNDPSSSPSFPN--ARKGMTIRLHHDPRRRTRPRPSVEPVELEKSNILMLGPTGSGKTLLAKTLAKLLDVPLVLTDATCLTQAGYVGEDVESLLFKLYQAAGQDLEATERGIIYIDEIDKLSKRESGSVRDVSGEGVQQALLKMLEGNVVNVPKAGGRKNPRGEHVQIDTTDILFICGGAFAGLEGVIARRVSQASIGFGASL-GGKGGGR 391
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01550.1 ID=NO11G01550.1|Name=NO11G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=2896bp AATTCCTCCTGAGTCCTCCGAGTACCAGAGTCATCGCTGCGCTCGCTCAC ATCACGCGTGCCTTCATCTTTGTTTCCGAAGGAATGTCTTGACTCAGAAC TTGGCCCTCTCCCGGATACGCCCTACATGAGCTGAAGACAGATTTTTTAA CACATACGAGACGGCGCTTGACGCTGGAGCCGCTCCCTAGCCAGAGTGCG TGGGACACTTTCCAAGGACAAGTAGTCAAAGCAACATCGATTCTGATAGT TTTTGCCTTTCCCCGCCTGTTCCCCGTACACAGGCACTAAATATCACACG AAGCCTACATTCCACAAGCAAGGATGTGGAGGCCAAGTGCCAGCGTCGCC GCTGCCGCTGCTACCGCCCGCCGCCGCACACGAGGAACTGTCTTGACGCG CTCGACCGGCATCAAATGCTTAAGCAGCAGCACCCCCTCCTCTTCCTCCT CCCCGCCCTCATCCAACCCCACCACCACCCCGACCGATTTTCGCGTGCTT TCGCCGAAGGAAATCTATCAAGGGCTGGAGGAACATGTTATTGGCCAAGA GGGGGTCAAGACTGGGCTGAGTGTGTCAGTTCACAATCACTACTTGAGGC TTTACAGCAAGGAACAAGCGCGGCAAGCCACAGAGGCAGCAGCCGCCGCT GCCGAGCTCCGCAAAGGTTCCTCCTCCTTTTCTTCCTCATCTGCCTCGTC TGTCTCGACATCAGTACGAGATACCGACACAATGACCATCTTTCACAATG GTACCACCAGCAACTTGGTTCTATCTGAGCCAGGGGACATGGACACGGCA TCCGGTTCTGTCCATCGCTTCCTGCGGGAAGAGATCCTCAACGCCGCCAG TGGCAATCCAAGCTCGCTTAACAGTAGCAGCAGTAACAACACTCCAACCG CTCCATCCCTCTCCTCTTCCAATTCCATTCCTCCACCAGCGGCACGAAAA GGGATCAAAATTCGCCTCAACCAACACGCCCGCCGCCACTCCCGTCCTGC GCCCTCCGTCGAGCCCGTGGAGCTCGAAAAATCAAATATTCTTATGCTGG GTCCCACGGGGAGTGGTAAAACCCTTCTGGCCAAAACACTGGCCAAGCTG CTGGATGTGCCCCTTGTCATTGCGGATGCCACTTGTCTGACCTCTGCAGG GTATGTGGGCGAGGATGTGGAAAGCATGTTGTACAAGCTCTATCAGGCGG CGGGACAAGACATCGAACTGACGGAACGCGGGATTATTTACATCGACGAA ATCGACAAATTGAGCAAGAGGGATAGCGGTTCGGTGAGAGACGTGTCTGG GGAGGGCGTCCAGCAAGCCTTGCTGAAGATGCTCGAAGGGAATGTGGTGA ACGTTCCCAAAGCGGGAGGGAGGAAGAATCCCAAAGGGGAGCATATCCAG ATTGATACAACCGACATTCTCTTCATTTGTGGGGGGGCGTTCGCGGGGTT GGAAGAGGTGATTGCCCGGAGGGTCAGCAAGGCCTCGATTGGGTTCGGGG CGGAGTTGGGGGGGGGCAGGGAGGGAGGGAGGGAGGGAAGGAAGGAGTAC CAGGGGGCCTTGTTCGATAAGGTGGAGCCAGACGATTTGGTCCAGTTTGG AGTGATTCCAGAACTGGTGGGGAGGTTGCCGCAGATACTGCACACTCAAG GCCTGACATTGGAACAGATGGTTCAGGTGGTCACCCAGCCCAAGCACGCG CTGATGAAGCAATACGCGTACTTGTTTGCCATGGAAGATGTCTCCTTCCA CGTCACTCCACCGGCCCTTCGACGCATAGCCGCTATGGCCCTGGAGAAAA AAACGGGGGCGAGGGGGCTGAGGTCCATCTTGGAGTATGCACTGAAGGAG AGCATGTATGTGGTGCCGGACGACGAGGAGGTTAATGCCGTGGTTCTCGA CGTGGCGGTAGCGGGAGAGGGAGGGGAGGGGGGGAAGGCGGTTGGGGAGT TGACAGTCCTGTTACTCCGTGGCCAAGACATCCTCGAAACGTACCTACAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGA TGAAGAGGCAGCAGCAGCAGCAGCATCTGGGTCTCTAGCGGGGGGGGGAG GAGGAGAAGAGGAGGTGGGTGAAGTGGCAGCAGCCTAGGGCCAGGGATGG AAAGAAGGGAGCATGCCCTGCCGATGCACAACTTAGCGGGAGCAGCAGGT GCCGTGCGATAGGTGGCGAGGAAGGATAAAGAGGAGGAGGAGGAGGAGGA GGAGGAGTGGGTTAGGTACGGTAGTGACTGGAGTTGCACCAGATCTGGCT CCAAGGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAAGGCGAGGAGGGAG GGATTGAGACAAGAACTTGTATATATGTCGTCACATGAGAGAGGGGAGCT TAGTGGTTATAAATGCCTACGTATGTATGATTGTGAGAGGGAGCGGAGGA AGACGGGAAGGAGGGAGGATAAGATAAAAAGTGTGAAATGCGAGGAACGT GCGCGAGGGAAAGAGTGGACGAGATAAGGAAGGGATAGCGTGTGAAGGTC ATTACATAGAGGGAAGAGAACCAGAGAAATGAAAGGGGGGGGGGGGAAAG CAAGAGGGGGCAAGCGTATGGAATGGTGTGGGTGTGAGAGAATGTGAGCG GATGTGGGCGGGTTTTAAGATAGAACCAGCGAACCAGCGAAAGAGAGAAA GAGAAAGCCAGGGAGAGAAACAGGAGATCGATAGTCGTATTTATATTTTG TATATACGGGCCAGAAATGCATCCCTCATGGCACAAAAGAAGGAAGAGGG GGAAGGGGAGGGAGACTTTCTCAGTGTCGAGGAGCCTGGGCGAAAAGAAA TAGGAAACGAAAGAAGGGCGATGCGAGAGAGGACACCAACGTCAGA back to topprotein sequence of NO11G01550.1 >NO11G01550.1-protein ID=NO11G01550.1-protein|Name=NO11G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp MWRPSASVAAAAATARRRTRGTVLTRSTGIKCLSSSTPSSSSSPPSSNPT TTPTDFRVLSPKEIYQGLEEHVIGQEGVKTGLSVSVHNHYLRLYSKEQAR QATEAAAAAAELRKGSSSFSSSSASSVSTSVRDTDTMTIFHNGTTSNLVL SEPGDMDTASGSVHRFLREEILNAASGNPSSLNSSSSNNTPTAPSLSSSN SIPPPAARKGIKIRLNQHARRHSRPAPSVEPVELEKSNILMLGPTGSGKT LLAKTLAKLLDVPLVIADATCLTSAGYVGEDVESMLYKLYQAAGQDIELT ERGIIYIDEIDKLSKRDSGSVRDVSGEGVQQALLKMLEGNVVNVPKAGGR KNPKGEHIQIDTTDILFICGGAFAGLEEVIARRVSKASIGFGAELGGGRE GGREGRKEYQGALFDKVEPDDLVQFGVIPELVGRLPQILHTQGLTLEQMV QVVTQPKHALMKQYAYLFAMEDVSFHVTPPALRRIAAMALEKKTGARGLR SILEYALKESMYVVPDDEEVNAVVLDVAVAGEGGEGGKAVGELTVLLLRG QDILETYLQQQQQQQQQQQQQQQQRDEEAAAAAASGSLAGGGGGEEEVGE VAAA* back to topmRNA from alignment at chr11:517434..520913+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01550.1 ID=NO11G01550.1|Name=NO11G01550.1|organism=Nannochloropsis oceanica|type=mRNA|length=3480bp|location=Sequence derived from alignment at chr11:517434..520913+ (Nannochloropsis oceanica) AATTCCTCCTGAGTCCTCCGAGTACCAGAGTCATCGCTGCGCTCGCTCAC
ATCACGCGTGCCTTCATCTTTGTTTCCGAAGGAATGTCTTGACTCAGAAC
TTGGCCCTCTCCCGGATACGCCCTACATGAGCTGAAGACAGATTTTTTAA
CACATACGAGACGGCGCTTGACGCTGGAGCCGCTCCCTAGCCAGAGTGCG
TGGGACACTTTCCAAGGACAAGTAGTCAAAGCAACATCGATTCTGATAGT
TTTTGCCTTTCCCCGCCTGTTCCCCGTACACAGGCACTAAATATCACACG
AAGCCTACATTCCACAAGCAAGGATGTGGAGGCCAAGTGCCAGCGTCGCC
GCTGCCGCTGCTACCGCCCGCCGCCGCACACGAGGAACTGTCTTGACGCG
CTCGACCGGCATCAAATGCTTAAGCAGCAGCACCCCCTCCTCTTCCTCCT
CCCCGCCCTCATCCAACCCCACCACCACCCCGACCGATTTTCGCGTGCTT
TCGCCGAAGGAAATCTATCAAGGGCTGGAGGAACATGTTATTGGCCAAGA
GGGGGTCAAGACTGGGCTGAGTGTGTCAGTTCACAATCACTACTTGAGGC
TTTACAGCAAGGAACAAGCGCGGCAAGCCACAGAGGCAGCAGCCGCCGCT
GCCGAGCTCCGCAAAGGTTCCTCCTCCTTTTCTTCCTCATCTGCCTCGTC
TGTCTCGACATCAGTACGAGATACCGACACAATGACCATCTTTCACAATG
GTACCACCAGCAACTTGGTTCTATCTGAGCCAGGGGACATGGACACGGCA
TCCGGTTCTGTCCATCGCTTCCTGCGGGAAGAGATCCTCAACGCCGCCAG
TGGCAATCCAAGCTCGCTTAACAGTAGCAGCAGTAACAACACTCCAACCG
CTCCATCCCTCTCCTCTTCCAATTCCATTCCTCCACCAGCGGCACGAAAA
GGGATCAAAATTCGCCTCAACCAACACGCCCGCCGCCACTCCCGTCCTGC
GCCCTCCGTCGAGCCCGTGGAGCTCGAAAAATCAAATATTCTTATGCTGG
GTCCCACGGGGAGTGGTAAAACCCTTCTGGCCAAAACACTGGCCAAGCTG
CTGGATGTGCCCCTTGTCATTGCGGATGCCACTTGTCTGACCTCTGCAGG
GTATGTGGGCGAGGATGTGGAAAGCATGTTGTACAAGCTCTATCAGGCGG
CGGGACAAGACATCGAACTGACGGAACGCGGGATTATTTACATCGACGAA
ATCGACAAATTGAGCAAGAGGGATAGCGGTTCGGTGAGAGACGTGTCTGG
GGAGGGCGTCCAGCAAGCCTTGCTGAAGATGCTCGAAGGGAATGTGGTGA
ACGTTCCCAAAGCGGGAGGGAGGAAGAATCCCAAAGGGGAGCATATCCAG
ATTGATACAACCGACATTCTCTTCATTTGTGGGGGGGCGTTCGCGGGGTT
GGAAGAGGTGATTGCCCGGAGGGTCAGCAAGGCCTCGATTGGGTTCGGGG
CGGAGTTGGGGGGGGGCAGGGAGGGAGGGAGGGAGGGAAGGAAGGAGTAC
CAGGGGGCCTTGTTCGATAAGGTGGAGCCAGACGATTTGGTCCAGTTTGG
AGTGATTCCAGAACTGGTGGGGAGGTTGCCGCAGATAGTGAGTATATATA
TATATATGTAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGGGACGGA
GGGACGGAGGGATGGAGGGACGGAGGGAGAGTGTCCACTACTTAATCACC
CCCGCCAGCTGCCCCCCCACATGCTTCTCGCATCGTGAAGTTTGTACACT
GATCACTCTGTCTTCCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTTCC
TCCCTCCCTCCTTCGCAGCTGCACACTCAAGGCCTGACATTGGAACAGAT
GGTTCAGGTGGTCACCCAGCCCAAGCACGCGCTGATGAAGCAATACGCGT
ACTTGTTTGCCATGGAAGATGTCTCCTTCCACGTCACTCCACCGGCCCTT
CGACGCATAGCCGCTATGGCCCTGGAGAAAAAAACGGGGGCGAGGGGGCT
GAGGTCCATCTTGGAGTATGCACTGAAGGAGAGCATGTATGTGGTGCCGG
ACGACGAGGAGGTTAATGCCGTGGTTCTCGACGTGGCGGTAGCGGGAGAG
GGAGGGGAGGGGGGGAAGGCGGTTGGGGAGTTGACGTAAGTAAAGAGCCA
GGGGAGGGAGGGAGGGAGGGAGGAAAGGAGGGAGAGAGGGTTTGGCAATA
GGTGCTGAAGGAGAGCGTGGATGCGGACGCTGGGGTTCTGATGGATGTAA
AGGAGGAGGGGGGTGAGGCAGAATAAGGGGTGGAGGGAGGGAGAAAGGGA
GGGAGGGCAGGCGAGTCATGTGTGAGATCATGCTTGTGCGTGAGGGCGTC
CTGCTCCTCCTTAGTTTCCCAGAAACAACAATTTCAATTTTTGTATCTAC
TTCCCCGTGCTTTTCATGCTCGCCTCTCCTTCCCTCCCACCCTCATTCCT
TCCTTCCTTCCTTCCCTCCCCCTCTTTCTCTCACACAGAGTCCTGTTACT
CCGTGGCCAAGACATCCTCGAAACGTACCTACAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGATGAAGAGGCAGCAGCA
GCAGCAGCATCTGGGTCTCTAGCGGGGGGGGGAGGAGGAGAAGAGGAGGT
GGGTGAAGTGGCAGCAGCCTAGGGCCAGGGATGGAAAGAAGGGAGCATGC
CCTGCCGATGCACAACTTAGCGGGAGCAGCAGGTGCCGTGCGATAGGTGG
CGAGGAAGGATAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGTGGGTTAGG
TACGGTAGTGACTGGAGTTGCACCAGATCTGGCTCCAAGGGGAGGGAGGG
AAGGAGGGAGGGAAGGAGGAAGGCGAGGAGGGAGGGATTGAGACAAGAAC
TTGTATATATGTCGTCACATGAGAGAGGGGAGCTTAGTGGTTATAAATGC
CTACGTATGTATGATTGTGAGAGGGAGCGGAGGAAGACGGGAAGGAGGGA
GGATAAGATAAAAAGTGTGAAATGCGAGGAACGTGCGCGAGGGAAAGAGT
GGACGAGATAAGGAAGGGATAGCGTGTGAAGGTCATTACATAGAGGGAAG
AGAACCAGAGAAATGAAAGGGGGGGGGGGGAAAGCAAGAGGGGGCAAGCG
TATGGAATGGTGTGGGTGTGAGAGAATGTGAGCGGATGTGGGCGGGTTTT
AAGATAGAACCAGCGAACCAGCGAAAGAGAGAAAGAGAAAGCCAGGGAGA
GAAACAGGAGATCGATAGTCGTATTTATATTTTGTATATACGGGCCAGAA
ATGCATCCCTCATGGCACAAAAGAAGGAAGAGGGGGAAGGGGAGGGAGAC
TTTCTCAGTGTCGAGGAGCCTGGGCGAAAAGAAATAGGAAACGAAAGAAG
GGCGATGCGAGAGAGGACACCAACGTCAGA back to topCoding sequence (CDS) from alignment at chr11:517434..520913+ >NO11G01550.1 ID=NO11G01550.1|Name=NO11G01550.1|organism=Nannochloropsis oceanica|type=CDS|length=1815bp|location=Sequence derived from alignment at chr11:517434..520913+ (Nannochloropsis oceanica) ATGTGGAGGCCAAGTGCCAGCGTCGCCGCTGCCGCTGCTACCGCCCGCCG CCGCACACGAGGAACTGTCTTGACGCGCTCGACCGGCATCAAATGCTTAA GCAGCAGCACCCCCTCCTCTTCCTCCTCCCCGCCCTCATCCAACCCCACC ACCACCCCGACCGATTTTCGCGTGCTTTCGCCGAAGGAAATCTATCAAGG GCTGGAGGAACATGTTATTGGCCAAGAGGGGGTCAAGACTGGGCTGAGTG TGTCAGTTCACAATCACTACTTGAGGCTTTACAGCAAGGAACAAGCGCGG CAAGCCACAGAGGCAGCAGCCGCCGCTGCCGAGCTCCGCAAAGGTTCCTC CTCCTTTTCTTCCTCATCTGCCTCGTCTGTCTCGACATCAGTACGAGATA CCGACACAATGACCATCTTTCACAATGGTACCACCAGCAACTTGGTTCTA TCTGAGCCAGGGGACATGGACACGGCATCCGGTTCTGTCCATCGCTTCCT GCGGGAAGAGATCCTCAACGCCGCCAGTGGCAATCCAAGCTCGCTTAACA GTAGCAGCAGTAACAACACTCCAACCGCTCCATCCCTCTCCTCTTCCAAT TCCATTCCTCCACCAGCGGCACGAAAAGGGATCAAAATTCGCCTCAACCA ACACGCCCGCCGCCACTCCCGTCCTGCGCCCTCCGTCGAGCCCGTGGAGC TCGAAAAATCAAATATTCTTATGCTGGGTCCCACGGGGAGTGGTAAAACC CTTCTGGCCAAAACACTGGCCAAGCTGCTGGATGTGCCCCTTGTCATTGC GGATGCCACTTGTCTGACCTCTGCAGGGTATGTGGGCGAGGATGTGGAAA GCATGTTGTACAAGCTCTATCAGGCGGCGGGACAAGACATCGAACTGACG GAACGCGGGATTATTTACATCGACGAAATCGACAAATTGAGCAAGAGGGA TAGCGGTTCGGTGAGAGACGTGTCTGGGGAGGGCGTCCAGCAAGCCTTGC TGAAGATGCTCGAAGGGAATGTGGTGAACGTTCCCAAAGCGGGAGGGAGG AAGAATCCCAAAGGGGAGCATATCCAGATTGATACAACCGACATTCTCTT CATTTGTGGGGGGGCGTTCGCGGGGTTGGAAGAGGTGATTGCCCGGAGGG TCAGCAAGGCCTCGATTGGGTTCGGGGCGGAGTTGGGGGGGGGCAGGGAG GGAGGGAGGGAGGGAAGGAAGGAGTACCAGGGGGCCTTGTTCGATAAGGT GGAGCCAGACGATTTGGTCCAGTTTGGAGTGATTCCAGAACTGGTGGGGA GGTTGCCGCAGATACTGCACACTCAAGGCCTGACATTGGAACAGATGGTT CAGGTGGTCACCCAGCCCAAGCACGCGCTGATGAAGCAATACGCGTACTT GTTTGCCATGGAAGATGTCTCCTTCCACGTCACTCCACCGGCCCTTCGAC GCATAGCCGCTATGGCCCTGGAGAAAAAAACGGGGGCGAGGGGGCTGAGG TCCATCTTGGAGTATGCACTGAAGGAGAGCATGTATGTGGTGCCGGACGA CGAGGAGGTTAATGCCGTGGTTCTCGACGTGGCGGTAGCGGGAGAGGGAG GGGAGGGGGGGAAGGCGGTTGGGGAGTTGACAGTCCTGTTACTCCGTGGC CAAGACATCCTCGAAACGTACCTACAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCGAGATGAAGAGGCAGCAGCAGCAGCAG CATCTGGGTCTCTAGCGGGGGGGGGAGGAGGAGAAGAGGAGGTGGGTGAA GTGGCAGCAGCCTAG back to top
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